Wall clock time and date at job start Sun Mar 29 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99632 * 2 1 3 5 5 C 1.46851 * 110.99986 * 304.21300 * 4 2 1 6 6 C 1.53035 * 109.52222 * 174.15640 * 5 4 2 7 7 C 1.53121 * 109.27789 * 59.17846 * 6 5 4 8 8 O 1.42898 * 109.57435 * 182.40635 * 7 6 5 9 9 C 1.42899 * 114.00201 * 269.71582 * 8 7 6 10 10 C 1.50702 * 109.47289 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99863 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00087 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00091 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99728 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47070 * 90.00205 * 14 12 10 16 16 H 1.48500 * 109.46877 * 209.99923 * 14 12 10 17 17 H 1.48497 * 109.47343 * 330.00332 * 14 12 10 18 18 C 1.53117 * 109.16245 * 302.34341 * 7 6 5 19 19 C 1.46846 * 111.00217 * 179.97438 * 4 2 1 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.08997 * 109.46054 * 294.17180 * 5 4 2 28 28 H 1.08997 * 109.46230 * 54.14226 * 5 4 2 29 29 H 1.08995 * 109.50785 * 299.24062 * 6 5 4 30 30 H 1.08997 * 109.50350 * 179.11565 * 6 5 4 31 31 H 1.09006 * 109.52098 * 62.24952 * 7 6 5 32 32 H 1.08999 * 109.47444 * 299.99996 * 9 8 7 33 33 H 1.09005 * 109.47207 * 60.00078 * 9 8 7 34 34 H 0.96999 * 119.99849 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.50398 * 297.71083 * 18 7 6 36 36 H 1.09001 * 109.53722 * 177.61634 * 18 7 6 37 37 H 1.09001 * 109.46498 * 305.85413 * 19 4 2 38 38 H 1.08996 * 109.46022 * 65.83922 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 1.4684 -2.0510 -1.2846 6 6 1.8811 -2.6878 -2.6135 7 6 3.4093 -2.7306 -2.7006 8 8 3.8019 -3.2730 -3.9630 9 6 3.9635 -4.6928 -3.9607 10 6 4.3767 -5.1536 -5.3348 11 1 4.5028 -4.4342 -6.1304 12 6 4.5927 -6.4938 -5.5766 13 7 4.9528 -6.8960 -6.7758 14 14 4.3738 -7.7382 -4.2007 15 1 2.9696 -8.2213 -4.1889 16 1 5.2903 -8.8857 -4.4208 17 1 4.6875 -7.0968 -2.8986 18 6 3.9607 -1.3091 -2.5606 19 6 3.4877 -0.7116 -1.2335 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.8522 -2.6511 -0.4596 28 1 0.3810 -2.0059 -1.2257 29 1 1.4861 -2.0959 -3.4391 30 1 1.4850 -3.7017 -2.6697 31 1 3.8025 -3.3546 -1.8979 32 1 4.7316 -4.9699 -3.2388 33 1 3.0202 -5.1655 -3.6870 34 1 5.1051 -7.8387 -6.9458 35 1 3.5983 -0.6953 -3.3854 36 1 5.0502 -1.3372 -2.5793 37 1 3.8664 0.3060 -1.1375 38 1 3.8623 -1.3179 -0.4088 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261050395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:27 Heat of formation + Delta-G solvation = -54.166532 kcal Electronic energy + Delta-G solvation = -16291.551964 eV Core-core repulsion = 13747.633920 eV Total energy + Delta-G solvation = -2543.918044 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.41807 -36.98771 -34.06445 -32.53120 -30.99622 -29.88601 -27.73743 -27.33805 -23.54686 -22.70501 -21.70922 -20.36999 -19.63540 -17.03757 -16.43630 -15.68537 -14.90133 -14.71504 -14.46977 -14.39400 -13.88525 -13.61287 -12.95322 -12.81754 -12.66897 -12.32948 -12.08142 -11.96611 -11.66496 -11.32946 -11.16027 -11.03106 -10.99215 -10.88356 -10.69382 -10.30222 -9.96216 -9.82561 -9.15949 -8.80425 -8.41484 -8.31148 -6.11134 -4.09910 3.24295 3.31270 3.32775 3.80031 4.35558 4.55931 4.72990 4.82767 4.97171 5.14823 5.17827 5.20906 5.37063 5.39634 5.45549 5.53303 5.60397 5.65552 5.66944 5.70915 5.84399 5.86521 5.97969 6.07286 6.12986 6.21112 6.29363 6.47874 6.58057 6.68691 7.01672 7.12981 7.13130 7.61157 8.06222 8.68613 9.00959 9.48407 11.02011 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054138 B = 0.005309 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.068909 B = 5272.733974 C = 5489.269045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 C -0.146 4.146 4 N -0.534 5.534 5 C 0.056 3.944 6 C -0.138 4.138 7 C 0.086 3.914 8 O -0.373 6.373 9 C 0.169 3.831 10 C -0.519 4.519 11 H 0.083 0.917 12 C 0.073 3.927 13 N -0.895 5.895 14 Si 0.875 3.125 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.112 4.112 19 C 0.057 3.943 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.036 0.964 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.001 0.999 33 H -0.003 1.003 34 H 0.266 0.734 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 12.765 15.730 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 C -0.204 4.204 4 N -0.260 5.260 5 C -0.072 4.072 6 C -0.176 4.176 7 C 0.027 3.973 8 O -0.292 6.292 9 C 0.094 3.906 10 C -0.557 4.557 11 H 0.101 0.899 12 C -0.129 4.129 13 N -0.534 5.534 14 Si 0.702 3.298 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.150 4.150 19 C -0.071 4.071 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.049 12.965 15.045 21.075 hybrid contribution 0.141 -1.505 1.585 2.190 sum -6.909 11.460 16.630 21.345 Atomic orbital electron populations 1.21927 0.94450 1.02071 1.02105 1.21586 0.95631 0.95064 0.91020 1.21895 1.01106 0.95305 1.02054 1.62000 1.08128 1.17402 1.38453 1.22137 0.99954 0.87939 0.97132 1.22099 0.97408 1.00808 0.97278 1.21944 0.93051 0.94214 0.88124 1.87954 1.88516 1.23683 1.29002 1.20622 0.94087 0.77459 0.98416 1.20913 1.46336 0.93613 0.94797 0.89929 1.24764 0.94681 0.97872 0.95593 1.69876 1.46903 1.16065 1.20558 0.86865 0.78615 0.81429 0.82933 1.19902 1.20747 1.19182 1.21621 1.00495 0.95648 0.97236 1.22124 0.87232 1.00718 0.96977 0.92419 0.91622 0.92442 0.94610 0.92490 0.91643 0.92480 0.95295 0.90268 0.90300 0.91387 0.93700 0.98113 0.98494 0.92371 0.90328 0.91029 0.90148 0.95205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.84 37.16 0.33 -1.00 16 2 C 0.08 0.76 2.68 -67.71 -0.18 0.58 16 3 C -0.15 -1.28 8.97 37.16 0.33 -0.95 16 4 N -0.53 -6.69 4.52 -226.70 -1.03 -7.72 16 5 C 0.06 0.74 5.13 -3.83 -0.02 0.72 16 6 C -0.14 -2.24 5.72 -26.65 -0.15 -2.39 16 7 C 0.09 1.57 2.68 -26.61 -0.07 1.50 16 8 O -0.37 -8.90 9.98 -35.23 -0.35 -9.25 16 9 C 0.17 4.39 4.57 36.01 0.16 4.55 16 10 C -0.52 -15.66 9.99 -34.44 -0.34 -16.00 16 11 H 0.08 2.72 8.06 -52.49 -0.42 2.30 16 12 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 13 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 14 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 18 C -0.11 -1.73 5.75 -26.65 -0.15 -1.88 16 19 C 0.06 0.72 5.22 -3.83 -0.02 0.70 16 20 H 0.06 0.52 6.22 -51.93 -0.32 0.20 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.49 6.28 -51.93 -0.33 0.17 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.93 5.90 -51.93 -0.31 0.62 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 31 H 0.04 0.82 7.79 -51.93 -0.40 0.41 16 32 H 0.00 0.03 7.14 -51.93 -0.37 -0.34 16 33 H 0.00 -0.07 7.39 -51.93 -0.38 -0.45 16 34 H 0.27 7.66 8.31 -40.82 -0.34 7.33 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.88 6.01 -51.93 -0.31 0.57 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -31.47 294.17 -7.71 -39.18 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -6.66 Total: -4.38 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.21 Total: -12.10 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.25 Total: -34.82 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.35 Total: -9.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.47 -7.71 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.987 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds