Wall clock time and date at job start Sun Mar 29 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99632 * 2 1 3 5 5 C 1.46851 * 110.99986 * 304.21300 * 4 2 1 6 6 C 1.53035 * 109.52222 * 174.15640 * 5 4 2 7 7 C 1.53121 * 109.27789 * 59.17846 * 6 5 4 8 8 O 1.42898 * 109.57435 * 182.40635 * 7 6 5 9 9 C 1.42899 * 114.00201 * 269.71582 * 8 7 6 10 10 C 1.50702 * 109.47289 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99863 * 359.97438 * 10 9 8 12 12 C 1.37885 * 120.00087 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00091 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99728 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47070 * 90.00205 * 14 12 10 16 16 H 1.48500 * 109.46877 * 209.99923 * 14 12 10 17 17 H 1.48497 * 109.47343 * 330.00332 * 14 12 10 18 18 C 1.53117 * 109.16245 * 302.34341 * 7 6 5 19 19 C 1.46846 * 111.00217 * 179.97438 * 4 2 1 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.08997 * 109.46054 * 294.17180 * 5 4 2 28 28 H 1.08997 * 109.46230 * 54.14226 * 5 4 2 29 29 H 1.08995 * 109.50785 * 299.24062 * 6 5 4 30 30 H 1.08997 * 109.50350 * 179.11565 * 6 5 4 31 31 H 1.09006 * 109.52098 * 62.24952 * 7 6 5 32 32 H 1.08999 * 109.47444 * 299.99996 * 9 8 7 33 33 H 1.09005 * 109.47207 * 60.00078 * 9 8 7 34 34 H 0.96999 * 119.99849 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.50398 * 297.71083 * 18 7 6 36 36 H 1.09001 * 109.53722 * 177.61634 * 18 7 6 37 37 H 1.09001 * 109.46498 * 305.85413 * 19 4 2 38 38 H 1.08996 * 109.46022 * 65.83922 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 1.4684 -2.0510 -1.2846 6 6 1.8811 -2.6878 -2.6135 7 6 3.4093 -2.7306 -2.7006 8 8 3.8019 -3.2730 -3.9630 9 6 3.9635 -4.6928 -3.9607 10 6 4.3767 -5.1536 -5.3348 11 1 4.5028 -4.4342 -6.1304 12 6 4.5927 -6.4938 -5.5766 13 7 4.9528 -6.8960 -6.7758 14 14 4.3738 -7.7382 -4.2007 15 1 2.9696 -8.2213 -4.1889 16 1 5.2903 -8.8857 -4.4208 17 1 4.6875 -7.0968 -2.8986 18 6 3.9607 -1.3091 -2.5606 19 6 3.4877 -0.7116 -1.2335 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.8522 -2.6511 -0.4596 28 1 0.3810 -2.0059 -1.2257 29 1 1.4861 -2.0959 -3.4391 30 1 1.4850 -3.7017 -2.6697 31 1 3.8025 -3.3546 -1.8979 32 1 4.7316 -4.9699 -3.2388 33 1 3.0202 -5.1655 -3.6870 34 1 5.1051 -7.8387 -6.9458 35 1 3.5983 -0.6953 -3.3854 36 1 5.0502 -1.3372 -2.5793 37 1 3.8664 0.3060 -1.1375 38 1 3.8623 -1.3179 -0.4088 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261050395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:27 Heat of formation + Delta-G solvation = -75.808835 kcal Electronic energy + Delta-G solvation = -16292.490445 eV Core-core repulsion = 13747.633920 eV Total energy + Delta-G solvation = -2544.856524 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56085 -38.51014 -35.41117 -34.59650 -32.10618 -31.17736 -29.70038 -28.08889 -24.86241 -24.02057 -23.53341 -21.35651 -20.77939 -19.09796 -17.73893 -17.30473 -16.42002 -16.07475 -15.87655 -15.49231 -15.12188 -14.99550 -14.62749 -14.26774 -13.77182 -13.59598 -13.23946 -13.07450 -12.88242 -12.73286 -12.59737 -12.25836 -12.16588 -12.08480 -11.90728 -11.81533 -11.53301 -11.35366 -11.22717 -10.91959 -10.22961 -9.25656 -8.39815 -6.48073 1.30534 1.33814 1.44668 2.26934 2.85876 2.92465 3.00359 3.80317 3.81397 4.06337 4.10784 4.13072 4.27844 4.38868 4.43549 4.45225 4.51739 4.60148 4.73639 4.76796 4.86453 4.88261 4.91654 4.98202 5.01464 5.03833 5.16733 5.24145 5.27950 5.36353 5.41675 5.45611 5.94303 6.14026 6.22936 6.56013 6.74395 7.16661 8.77502 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054138 B = 0.005309 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.068909 B = 5272.733974 C = 5489.269045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 C -0.144 4.144 4 N -0.546 5.546 5 C 0.064 3.936 6 C -0.134 4.134 7 C 0.074 3.926 8 O -0.401 6.401 9 C 0.182 3.818 10 C -0.548 4.548 11 H 0.029 0.971 12 C 0.015 3.985 13 N -0.941 5.941 14 Si 0.955 3.045 15 H -0.258 1.258 16 H -0.271 1.271 17 H -0.248 1.248 18 C -0.108 4.108 19 C 0.065 3.935 20 H 0.056 0.944 21 H 0.058 0.942 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.274 0.726 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.808 12.742 18.882 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 C -0.201 4.201 4 N -0.272 5.272 5 C -0.064 4.064 6 C -0.172 4.172 7 C 0.016 3.984 8 O -0.321 6.321 9 C 0.107 3.893 10 C -0.586 4.586 11 H 0.048 0.952 12 C -0.183 4.183 13 N -0.580 5.580 14 Si 0.776 3.224 15 H -0.182 1.182 16 H -0.195 1.195 17 H -0.172 1.172 18 C -0.146 4.146 19 C -0.063 4.063 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.094 0.906 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.895 12.977 18.205 23.710 hybrid contribution 0.411 -1.392 0.511 1.539 sum -7.484 11.585 18.716 23.249 Atomic orbital electron populations 1.21918 0.93563 1.02178 1.02678 1.21706 0.96372 0.95475 0.89910 1.21884 1.01164 0.94437 1.02608 1.61993 1.07949 1.17062 1.40229 1.22048 1.00971 0.88281 0.95081 1.22030 0.95639 1.00642 0.98891 1.22336 0.94741 0.95472 0.85841 1.87910 1.89104 1.22547 1.32538 1.20314 0.94451 0.78854 0.95705 1.21175 1.47934 0.93597 0.95902 0.95211 1.25834 0.93487 1.00144 0.98849 1.70029 1.47501 1.17188 1.23307 0.85622 0.79523 0.78018 0.79276 1.18210 1.19537 1.17153 1.21609 1.00467 0.93768 0.98766 1.22066 0.87576 1.01632 0.95026 0.92533 0.92333 0.90621 0.94178 0.92382 0.92359 0.90687 0.94665 0.88656 0.91732 0.92029 0.93152 0.97353 0.97318 0.91699 0.91586 0.91050 0.88204 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.84 71.98 0.64 -1.57 16 2 C 0.07 1.27 2.68 44.92 0.12 1.39 16 3 C -0.14 -2.10 8.97 71.98 0.65 -1.45 16 4 N -0.55 -12.48 4.52 -871.14 -3.94 -16.42 16 5 C 0.06 1.55 5.13 86.32 0.44 1.99 16 6 C -0.13 -4.25 5.72 30.65 0.18 -4.08 16 7 C 0.07 2.69 2.68 30.67 0.08 2.77 16 8 O -0.40 -19.58 9.98 -148.98 -1.49 -21.06 16 9 C 0.18 9.48 4.57 71.24 0.33 9.80 16 10 C -0.55 -34.28 9.99 25.60 0.26 -34.03 16 11 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 12 C 0.02 0.90 5.47 84.66 0.46 1.37 16 13 N -0.94 -59.95 13.96 21.45 0.30 -59.65 16 14 Si 0.95 43.92 27.47 68.60 1.88 45.80 16 15 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 18 C -0.11 -3.27 5.75 30.65 0.18 -3.10 16 19 C 0.06 1.49 5.22 86.33 0.45 1.94 16 20 H 0.06 0.86 6.22 -2.39 -0.01 0.85 16 21 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 23 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.83 6.28 -2.39 -0.01 0.82 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.10 2.01 5.90 -2.39 -0.01 2.00 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 2.00 7.96 -2.39 -0.02 1.98 16 31 H 0.05 1.77 7.79 -2.38 -0.02 1.75 16 32 H 0.01 0.44 7.14 -2.39 -0.02 0.42 16 33 H 0.01 0.45 7.39 -2.38 -0.02 0.43 16 34 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.10 1.94 6.01 -2.39 -0.01 1.92 16 38 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -69.75 294.17 1.48 -68.28 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.95 Total: 8.03 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 3.77 Total: -24.96 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -3.64 Total: -76.08 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.49 Total: -21.06 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -69.75 1.48 -68.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.534 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds