Wall clock time and date at job start Sun Mar 29 2020 21:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47334 * 2 1 4 4 H 1.08999 * 109.47469 * 302.80842 * 3 2 1 5 5 C 1.50700 * 109.47334 * 182.80692 * 3 2 1 6 6 H 1.07996 * 120.00549 * 240.00426 * 5 3 2 7 7 C 1.37879 * 119.99608 * 60.00482 * 5 3 2 8 8 N 1.31514 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00062 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47267 * 89.99616 * 9 7 5 11 11 H 1.48494 * 109.47191 * 209.99839 * 9 7 5 12 12 H 1.48505 * 109.46856 * 329.99766 * 9 7 5 13 13 N 1.46902 * 109.47243 * 62.81290 * 3 2 1 14 14 C 1.46839 * 111.00518 * 189.02033 * 13 3 2 15 15 C 1.53032 * 109.52665 * 174.15931 * 14 13 3 16 16 C 1.53117 * 109.27970 * 59.17611 * 15 14 13 17 17 H 1.09003 * 109.57997 * 62.28329 * 16 15 14 18 18 C 1.53004 * 109.52419 * 182.44128 * 16 15 14 19 19 C 1.53114 * 109.15980 * 302.34522 * 16 15 14 20 20 H 1.08997 * 109.50811 * 297.67074 * 19 16 15 21 21 O 1.42909 * 109.50332 * 177.59334 * 19 16 15 22 22 C 1.46847 * 110.99785 * 64.76053 * 13 3 2 23 23 H 1.09001 * 109.46965 * 294.75036 * 1 2 3 24 24 H 1.09005 * 109.47068 * 54.74808 * 1 2 3 25 25 H 1.08996 * 109.47547 * 174.75123 * 1 2 3 26 26 H 1.09009 * 109.46935 * 240.00145 * 2 1 3 27 27 H 1.09002 * 109.47178 * 120.00794 * 2 1 3 28 28 H 0.96997 * 120.00207 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46696 * 54.13881 * 14 13 3 30 30 H 1.09007 * 109.45190 * 294.16754 * 14 13 3 31 31 H 1.08998 * 109.50429 * 299.23555 * 15 14 13 32 32 H 1.09006 * 109.53707 * 179.13581 * 15 14 13 33 33 H 1.09004 * 109.47161 * 179.67910 * 18 16 15 34 34 H 1.09002 * 109.47190 * 299.68418 * 18 16 15 35 35 H 1.08999 * 109.46697 * 59.68481 * 18 16 15 36 36 H 0.96703 * 113.99684 * 180.02562 * 21 19 16 37 37 H 1.09008 * 109.42730 * 65.81165 * 22 13 3 38 38 H 1.08997 * 109.49949 * 305.84743 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6362 1.9706 -0.8637 5 6 3.5454 1.4430 -0.0696 6 1 4.1225 1.8974 0.7221 7 6 4.1860 0.8632 -1.1441 8 7 3.4834 0.3093 -2.1080 9 14 6.0521 0.8632 -1.2301 10 1 6.5779 -0.3607 -0.5738 11 1 6.4821 0.8865 -2.6512 12 1 6.5797 2.0640 -0.5336 13 7 1.6067 2.1151 1.2320 14 6 1.8911 3.5545 1.1737 15 6 1.2980 4.2433 2.4049 16 6 1.9100 3.6338 3.6691 17 1 2.9853 3.8121 3.6769 18 6 1.2764 4.2762 4.9048 19 6 1.6412 2.1265 3.6813 20 1 0.5664 1.9487 3.7148 21 8 2.2576 1.5412 4.8301 22 6 2.2238 1.4983 2.4132 23 1 -0.3633 0.4303 0.9333 24 1 -0.3633 0.5932 -0.8392 25 1 -0.3634 -1.0233 -0.0940 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 3.9341 -0.0982 -2.8641 29 1 1.4469 3.9763 0.2722 30 1 2.9697 3.7109 1.1545 31 1 0.2177 4.0989 2.4175 32 1 1.5222 5.3094 2.3695 33 1 1.7086 3.8377 5.8043 34 1 1.4682 5.3491 4.8953 35 1 0.2009 4.0992 4.8951 36 1 2.1281 0.5856 4.9020 37 1 3.3009 1.6639 2.3877 38 1 2.0211 0.4274 2.4122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299902889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:38 Heat of formation + Delta-G solvation = -66.191904 kcal Electronic energy + Delta-G solvation = -17147.115196 eV Core-core repulsion = 14602.675693 eV Total energy + Delta-G solvation = -2544.439503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.00525 -36.16651 -34.47776 -32.31055 -31.12430 -29.12002 -27.71454 -25.66572 -23.06417 -22.56889 -21.33343 -19.49362 -18.99154 -16.87503 -16.39122 -15.29189 -14.50128 -14.45677 -14.05348 -13.63308 -13.09888 -12.88145 -12.73549 -12.34028 -12.12134 -11.90691 -11.60557 -11.34536 -11.21080 -11.11207 -10.87274 -10.62130 -10.44955 -10.20209 -10.04876 -9.79698 -9.68398 -9.46559 -9.24459 -9.03650 -8.38393 -7.13758 -6.00345 -4.13586 3.25587 3.32999 3.36211 4.38452 4.48384 5.06916 5.16456 5.22500 5.25439 5.51515 5.76757 5.79864 5.91809 6.00039 6.01213 6.11573 6.27893 6.32321 6.43663 6.50706 6.52187 6.55458 6.62682 6.70241 6.75881 6.89301 7.08151 7.16695 7.33170 7.58697 7.73704 7.91758 8.00673 8.14340 8.31709 8.46037 8.96349 9.54101 10.98898 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.009092 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.501966 B = 3078.786690 C = 3435.019517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.530 5.530 14 C 0.060 3.940 15 C -0.109 4.109 16 C -0.083 4.083 17 H 0.069 0.931 18 C -0.140 4.140 19 C 0.109 3.891 20 H 0.054 0.946 21 O -0.573 6.573 22 C 0.034 3.966 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.025 0.975 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.374 0.626 37 H 0.044 0.956 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 3.511 8.663 10.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.057 0.943 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.255 5.255 14 C -0.069 4.069 15 C -0.147 4.147 16 C -0.101 4.101 17 H 0.088 0.912 18 C -0.197 4.197 19 C 0.050 3.950 20 H 0.072 0.928 21 O -0.377 6.377 22 C -0.095 4.095 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.220 0.780 37 H 0.062 0.938 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.884 3.987 8.627 10.685 hybrid contribution 1.866 -0.592 -0.405 2.000 sum -3.017 3.394 8.221 9.392 Atomic orbital electron populations 1.21694 0.98813 0.98339 1.00537 1.21608 0.92203 0.99201 1.01930 1.19283 0.92753 0.91001 0.86150 0.94301 1.21743 0.92735 1.37491 1.06247 0.92588 1.24907 0.97931 0.95043 0.95529 1.69869 1.34961 1.37745 1.09827 0.86684 0.86253 0.78414 0.77201 1.20697 1.21175 1.20073 1.62348 1.57731 1.01658 1.03812 1.21887 0.98661 0.89821 0.96499 1.21655 1.00587 0.98500 0.93954 1.21116 1.00627 0.93277 0.95126 0.91225 1.21749 1.00293 0.99610 0.98049 1.21923 0.95544 0.92777 0.84724 0.92786 1.86443 1.79276 1.26026 1.45965 1.22562 0.97958 0.98842 0.90152 0.93621 0.94129 0.95632 0.88981 0.94977 0.92888 0.91629 0.94601 0.91647 0.91982 0.92390 0.93296 0.93148 0.78005 0.93767 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.71 37.16 0.36 -2.37 16 2 C -0.11 -2.59 5.09 -26.73 -0.14 -2.72 16 3 C 0.21 5.19 1.74 -68.87 -0.12 5.07 16 4 H 0.04 1.05 8.01 -51.93 -0.42 0.63 16 5 C -0.54 -14.40 7.22 -34.44 -0.25 -14.65 16 6 H 0.06 1.52 5.84 -52.49 -0.31 1.21 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.70 11.30 55.43 0.63 -24.08 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 N -0.53 -10.95 4.07 -228.09 -0.93 -11.87 16 14 C 0.06 1.15 5.18 -3.84 -0.02 1.13 16 15 C -0.11 -1.69 5.38 -26.65 -0.14 -1.83 16 16 C -0.08 -1.29 2.51 -90.50 -0.23 -1.52 16 17 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 18 C -0.14 -1.85 9.08 37.16 0.34 -1.51 16 19 C 0.11 1.79 3.04 -26.65 -0.08 1.71 16 20 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 21 O -0.57 -8.82 12.76 -35.23 -0.45 -9.27 16 22 C 0.03 0.66 4.42 -3.83 -0.02 0.64 16 23 H 0.04 0.87 7.84 -51.93 -0.41 0.46 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.41 6.00 -51.92 -0.31 2.10 16 27 H 0.03 0.73 6.27 -51.93 -0.33 0.41 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.07 1.25 8.03 -51.93 -0.42 0.84 16 30 H 0.04 0.75 7.23 -51.93 -0.38 0.38 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.79 7.76 -51.93 -0.40 0.38 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.37 4.35 9.08 45.56 0.41 4.76 16 37 H 0.04 0.97 6.42 -51.92 -0.33 0.64 16 38 H 0.07 1.37 6.12 -51.93 -0.32 1.05 16 LS Contribution 289.68 15.07 4.37 4.37 Total: -1.00 -27.87 289.68 -7.51 -35.39 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.72 Total: 3.64 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -0.39 Total: -14.30 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.30 Total: -35.95 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.45 Total: -9.27 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.87 -7.51 -35.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299902889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.807 kcal (2) G-P(sol) polarization free energy of solvation -27.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds