Wall clock time and date at job start Sun Mar 29 2020 21:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47334 * 2 1 4 4 H 1.08999 * 109.47469 * 302.80842 * 3 2 1 5 5 C 1.50700 * 109.47334 * 182.80692 * 3 2 1 6 6 H 1.07996 * 120.00549 * 240.00426 * 5 3 2 7 7 C 1.37879 * 119.99608 * 60.00482 * 5 3 2 8 8 N 1.31514 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00062 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47267 * 89.99616 * 9 7 5 11 11 H 1.48494 * 109.47191 * 209.99839 * 9 7 5 12 12 H 1.48505 * 109.46856 * 329.99766 * 9 7 5 13 13 N 1.46902 * 109.47243 * 62.81290 * 3 2 1 14 14 C 1.46839 * 111.00518 * 189.02033 * 13 3 2 15 15 C 1.53032 * 109.52665 * 174.15931 * 14 13 3 16 16 C 1.53117 * 109.27970 * 59.17611 * 15 14 13 17 17 H 1.09003 * 109.57997 * 62.28329 * 16 15 14 18 18 C 1.53004 * 109.52419 * 182.44128 * 16 15 14 19 19 C 1.53114 * 109.15980 * 302.34522 * 16 15 14 20 20 H 1.08997 * 109.50811 * 297.67074 * 19 16 15 21 21 O 1.42909 * 109.50332 * 177.59334 * 19 16 15 22 22 C 1.46847 * 110.99785 * 64.76053 * 13 3 2 23 23 H 1.09001 * 109.46965 * 294.75036 * 1 2 3 24 24 H 1.09005 * 109.47068 * 54.74808 * 1 2 3 25 25 H 1.08996 * 109.47547 * 174.75123 * 1 2 3 26 26 H 1.09009 * 109.46935 * 240.00145 * 2 1 3 27 27 H 1.09002 * 109.47178 * 120.00794 * 2 1 3 28 28 H 0.96997 * 120.00207 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46696 * 54.13881 * 14 13 3 30 30 H 1.09007 * 109.45190 * 294.16754 * 14 13 3 31 31 H 1.08998 * 109.50429 * 299.23555 * 15 14 13 32 32 H 1.09006 * 109.53707 * 179.13581 * 15 14 13 33 33 H 1.09004 * 109.47161 * 179.67910 * 18 16 15 34 34 H 1.09002 * 109.47190 * 299.68418 * 18 16 15 35 35 H 1.08999 * 109.46697 * 59.68481 * 18 16 15 36 36 H 0.96703 * 113.99684 * 180.02562 * 21 19 16 37 37 H 1.09008 * 109.42730 * 65.81165 * 22 13 3 38 38 H 1.08997 * 109.49949 * 305.84743 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6362 1.9706 -0.8637 5 6 3.5454 1.4430 -0.0696 6 1 4.1225 1.8974 0.7221 7 6 4.1860 0.8632 -1.1441 8 7 3.4834 0.3093 -2.1080 9 14 6.0521 0.8632 -1.2301 10 1 6.5779 -0.3607 -0.5738 11 1 6.4821 0.8865 -2.6512 12 1 6.5797 2.0640 -0.5336 13 7 1.6067 2.1151 1.2320 14 6 1.8911 3.5545 1.1737 15 6 1.2980 4.2433 2.4049 16 6 1.9100 3.6338 3.6691 17 1 2.9853 3.8121 3.6769 18 6 1.2764 4.2762 4.9048 19 6 1.6412 2.1265 3.6813 20 1 0.5664 1.9487 3.7148 21 8 2.2576 1.5412 4.8301 22 6 2.2238 1.4983 2.4132 23 1 -0.3633 0.4303 0.9333 24 1 -0.3633 0.5932 -0.8392 25 1 -0.3634 -1.0233 -0.0940 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 3.9341 -0.0982 -2.8641 29 1 1.4469 3.9763 0.2722 30 1 2.9697 3.7109 1.1545 31 1 0.2177 4.0989 2.4175 32 1 1.5222 5.3094 2.3695 33 1 1.7086 3.8377 5.8043 34 1 1.4682 5.3491 4.8953 35 1 0.2009 4.0992 4.8951 36 1 2.1281 0.5856 4.9020 37 1 3.3009 1.6639 2.3877 38 1 2.0211 0.4274 2.4122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299902889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:38 Heat of formation + Delta-G solvation = -85.272687 kcal Electronic energy + Delta-G solvation = -17147.942600 eV Core-core repulsion = 14602.675693 eV Total energy + Delta-G solvation = -2545.266908 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49205 -37.71289 -35.92200 -34.16287 -32.82564 -30.56814 -29.32801 -27.38619 -24.84839 -23.99551 -22.83198 -21.07652 -20.65894 -18.36776 -18.18123 -17.03050 -16.29790 -15.86688 -15.54217 -15.24178 -14.68473 -14.60494 -14.15340 -13.80249 -13.58803 -13.28104 -13.17939 -13.04482 -12.90060 -12.65628 -12.48566 -12.45928 -12.02514 -11.79413 -11.60329 -11.50150 -11.35799 -11.06163 -10.90615 -10.62868 -10.45814 -8.95687 -8.05831 -6.28083 1.33213 1.35647 1.43965 2.37119 3.12079 3.16794 3.58848 3.88334 3.97084 4.16704 4.38789 4.49864 4.51714 4.59442 4.72998 4.74048 4.85046 4.90709 4.92066 4.98283 5.08802 5.14067 5.16971 5.24184 5.30762 5.42031 5.43423 5.49868 5.52040 5.62694 5.78200 6.05032 6.17877 6.36896 6.62213 6.91629 6.94292 7.42539 8.88959 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.009092 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.501966 B = 3078.786690 C = 3435.019517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 C 0.219 3.781 4 H 0.006 0.994 5 C -0.552 4.552 6 H 0.044 0.956 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.523 5.523 14 C 0.058 3.942 15 C -0.097 4.097 16 C -0.086 4.086 17 H 0.050 0.950 18 C -0.131 4.131 19 C 0.120 3.880 20 H 0.068 0.932 21 O -0.578 6.578 22 C 0.039 3.961 23 H 0.057 0.943 24 H 0.034 0.966 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.060 0.940 30 H 0.009 0.991 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.390 0.610 37 H 0.011 0.989 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 4.020 10.178 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.024 0.976 5 C -0.591 4.591 6 H 0.062 0.938 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.247 5.247 14 C -0.071 4.071 15 C -0.135 4.135 16 C -0.104 4.104 17 H 0.068 0.932 18 C -0.188 4.188 19 C 0.061 3.939 20 H 0.085 0.915 21 O -0.385 6.385 22 C -0.090 4.090 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.027 0.973 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.239 0.761 37 H 0.030 0.970 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.693 4.488 10.159 12.480 hybrid contribution 2.135 -0.759 -0.874 2.429 sum -3.557 3.729 9.285 10.619 Atomic orbital electron populations 1.21551 0.95982 0.99675 1.00910 1.21443 0.94676 0.97997 1.00296 1.19069 0.91377 0.91601 0.86747 0.97587 1.21950 0.94162 1.37089 1.05865 0.93803 1.25571 1.01738 0.94985 0.95409 1.69985 1.36295 1.38307 1.10191 0.85796 0.81742 0.78263 0.77270 1.20238 1.20593 1.20191 1.62319 1.57193 1.02378 1.02854 1.21968 0.97307 0.89212 0.98610 1.21588 1.00906 0.99285 0.91686 1.21145 0.99796 0.93005 0.96488 0.93152 1.21664 1.00676 1.00326 0.96132 1.21784 0.95817 0.93132 0.83163 0.91457 1.86423 1.79311 1.27694 1.45027 1.22566 0.96110 0.98942 0.91336 0.92358 0.94721 0.93617 0.92026 0.95084 0.92856 0.92139 0.97291 0.90307 0.89669 0.92795 0.91654 0.91900 0.76082 0.97045 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.71 71.98 0.70 -4.11 16 2 C -0.11 -4.97 5.09 30.59 0.16 -4.82 16 3 C 0.22 10.88 1.74 44.17 0.08 10.96 16 4 H 0.01 0.35 8.01 -2.39 -0.02 0.33 16 5 C -0.55 -30.10 7.22 25.60 0.18 -29.92 16 6 H 0.04 2.46 5.84 -2.91 -0.02 2.44 16 7 C 0.02 1.27 5.30 84.66 0.45 1.72 16 8 N -0.91 -51.79 11.30 21.45 0.24 -51.54 16 9 Si 0.94 44.09 29.54 68.60 2.03 46.11 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 N -0.52 -21.62 4.07 -875.54 -3.56 -25.18 16 14 C 0.06 2.20 5.18 86.33 0.45 2.65 16 15 C -0.10 -2.79 5.38 30.64 0.16 -2.62 16 16 C -0.09 -2.50 2.51 -10.72 -0.03 -2.52 16 17 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 18 C -0.13 -3.01 9.08 71.98 0.65 -2.36 16 19 C 0.12 3.71 3.04 30.64 0.09 3.80 16 20 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 21 O -0.58 -16.62 12.76 -148.98 -1.90 -18.52 16 22 C 0.04 1.52 4.42 86.33 0.38 1.91 16 23 H 0.06 2.10 7.84 -2.39 -0.02 2.08 16 24 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 3.29 6.00 -2.38 -0.01 3.28 16 27 H 0.03 1.43 6.27 -2.39 -0.01 1.41 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.06 2.34 8.03 -2.39 -0.02 2.32 16 30 H 0.01 0.38 7.23 -2.38 -0.02 0.36 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.05 1.30 7.76 -2.38 -0.02 1.28 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.39 8.24 9.08 -74.06 -0.67 7.57 16 37 H 0.01 0.51 6.42 -2.38 -0.02 0.50 16 38 H 0.07 2.55 6.12 -2.39 -0.01 2.53 16 Total: -1.00 -60.35 289.68 0.44 -59.91 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.35 Total: 14.52 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 3.28 Total: -25.31 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -3.32 Total: -76.72 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.90 Total: -18.52 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -60.35 0.44 -59.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299902889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.359 kcal (2) G-P(sol) polarization free energy of solvation -60.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds