Wall clock time and date at job start Sun Mar 29 2020 21:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46868 * 2 1 4 4 H 1.08998 * 109.47015 * 302.40997 * 3 2 1 5 5 C 1.50698 * 109.46642 * 182.41532 * 3 2 1 6 6 H 1.08002 * 120.00404 * 239.99448 * 5 3 2 7 7 C 1.37882 * 120.00372 * 60.00079 * 5 3 2 8 8 N 1.31517 * 119.99442 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00275 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46977 * 120.00223 * 9 7 5 12 12 H 1.48500 * 109.47228 * 239.99947 * 9 7 5 13 13 N 1.46892 * 109.47214 * 62.41649 * 3 2 1 14 14 C 1.46844 * 110.99807 * 189.68878 * 13 3 2 15 15 C 1.53046 * 109.52459 * 174.15950 * 14 13 3 16 16 C 1.53125 * 109.30690 * 59.15902 * 15 14 13 17 17 C 1.53122 * 109.15887 * 302.40376 * 16 15 14 18 18 H 1.08995 * 109.50769 * 297.63744 * 17 16 15 19 19 O 1.42900 * 109.50100 * 177.55536 * 17 16 15 20 20 C 1.42905 * 113.99719 * 90.16169 * 19 17 16 21 21 C 1.46843 * 111.00311 * 65.48002 * 13 3 2 22 22 H 1.08993 * 109.47344 * 54.65908 * 1 2 3 23 23 H 1.09000 * 109.47216 * 174.66692 * 1 2 3 24 24 H 1.09004 * 109.46858 * 294.66130 * 1 2 3 25 25 H 1.09001 * 109.46590 * 240.00136 * 2 1 3 26 26 H 1.09000 * 109.47198 * 119.99665 * 2 1 3 27 27 H 0.97003 * 119.99517 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46711 * 54.14702 * 14 13 3 29 29 H 1.09006 * 109.46590 * 294.17215 * 14 13 3 30 30 H 1.08999 * 109.50408 * 179.11920 * 15 14 13 31 31 H 1.08997 * 109.49970 * 299.20235 * 15 14 13 32 32 H 1.08997 * 109.52325 * 62.27058 * 16 15 14 33 33 H 1.08999 * 109.51820 * 182.46065 * 16 15 14 34 34 H 1.09001 * 109.46995 * 59.99778 * 20 19 17 35 35 H 1.08996 * 109.46761 * 179.97438 * 20 19 17 36 36 H 1.08997 * 109.47068 * 299.99966 * 20 19 17 37 37 H 1.09008 * 109.46329 * 305.85555 * 21 13 3 38 38 H 1.08997 * 109.46653 * 65.83009 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6417 1.9687 -0.8676 5 6 3.5457 1.4429 -0.0599 6 1 4.1177 1.8994 0.7344 7 6 4.1934 0.8607 -1.1288 8 7 3.4969 0.3045 -2.0959 9 14 6.0599 0.8618 -1.2034 10 1 6.6029 1.5447 -0.0017 11 1 6.5545 -0.5379 -1.2426 12 1 6.5061 1.5788 -2.4249 13 7 1.5985 2.1180 1.2275 14 6 1.8689 3.5598 1.1611 15 6 1.2676 4.2500 2.3876 16 6 1.8834 3.6541 3.6566 17 6 1.6303 2.1441 3.6768 18 1 0.5573 1.9553 3.7097 19 8 2.2511 1.5717 4.8296 20 6 1.4078 1.5282 5.9825 21 6 2.2211 1.5151 2.4129 22 1 -0.3633 0.5944 -0.8382 23 1 -0.3633 -1.0232 -0.0955 24 1 -0.3633 0.4288 0.9340 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9526 -0.1054 -2.8478 28 1 1.4215 3.9720 0.2567 29 1 2.9459 3.7269 1.1420 30 1 1.4819 5.3179 2.3459 31 1 0.1886 4.0955 2.3995 32 1 2.9568 3.8431 3.6640 33 1 1.4258 4.1125 4.5333 34 1 0.5232 0.9303 5.7633 35 1 1.9520 1.0801 6.8138 36 1 1.1050 2.5406 6.2496 37 1 2.0295 0.4420 2.4177 38 1 3.2964 1.6918 2.3881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299908404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:53 Heat of formation + Delta-G solvation = -55.086676 kcal Electronic energy + Delta-G solvation = -17070.658983 eV Core-core repulsion = 14526.701038 eV Total energy + Delta-G solvation = -2543.957944 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.94725 -36.85756 -34.22152 -31.82740 -30.42713 -29.63245 -26.52201 -26.22920 -23.81175 -22.53711 -21.82294 -19.62680 -18.93163 -16.42034 -16.16420 -15.56621 -14.85736 -14.58988 -14.21897 -13.84236 -13.19071 -12.99983 -12.85993 -12.60561 -12.46534 -11.74774 -11.53210 -11.28294 -11.16334 -10.93351 -10.71780 -10.54458 -10.48903 -10.30976 -10.02483 -9.89195 -9.61698 -9.51297 -9.07973 -8.96182 -8.35157 -7.11408 -5.97267 -4.09958 3.27613 3.36292 3.40595 3.99032 4.42000 5.11143 5.23022 5.27368 5.35151 5.42067 5.50225 5.51944 5.72749 5.76481 5.96993 6.08070 6.23506 6.29159 6.34716 6.41508 6.47872 6.56850 6.66739 6.72833 6.79861 6.88558 7.13655 7.20660 7.35536 7.53106 7.64048 7.80140 7.99272 8.17334 8.34336 8.48867 8.99898 9.57607 11.02228 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.008874 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.428942 B = 3154.350826 C = 3409.474014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C 0.216 3.784 4 H 0.040 0.960 5 C -0.542 4.542 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.531 5.531 14 C 0.060 3.940 15 C -0.113 4.113 16 C -0.137 4.137 17 C 0.090 3.910 18 H 0.061 0.939 19 O -0.388 6.388 20 C 0.034 3.966 21 C 0.068 3.932 22 H 0.039 0.961 23 H 0.025 0.975 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.033 0.967 27 H 0.260 0.740 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 3.866 9.840 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.110 3.890 4 H 0.058 0.942 5 C -0.581 4.581 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.257 5.257 14 C -0.069 4.069 15 C -0.151 4.151 16 C -0.175 4.175 17 C 0.032 3.968 18 H 0.079 0.921 19 O -0.306 6.306 20 C -0.063 4.063 21 C -0.060 4.060 22 H 0.058 0.942 23 H 0.044 0.956 24 H 0.064 0.936 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.336 3.638 9.702 11.654 hybrid contribution 1.703 0.179 -0.108 1.716 sum -3.632 3.817 9.593 10.945 Atomic orbital electron populations 1.21690 0.98858 0.98327 1.00480 1.21612 0.92181 0.99164 1.02058 1.19282 0.92762 0.91010 0.85977 0.94233 1.21794 0.92701 1.37261 1.06371 0.92423 1.24905 0.97964 0.95038 0.95520 1.69888 1.34877 1.37749 1.09940 0.86627 0.86281 0.77751 0.77894 1.19906 1.20990 1.21059 1.62326 1.57823 1.01786 1.03730 1.21891 0.98714 0.89819 0.96457 1.21567 1.00429 0.98508 0.94606 1.22033 1.01511 0.96162 0.97783 1.22273 0.96601 0.91997 0.85951 0.92120 1.87893 1.40230 1.82726 1.19737 1.22699 0.94941 0.99835 0.88801 1.21814 0.97573 0.98939 0.87699 0.94177 0.95633 0.93635 0.88971 0.94784 0.92975 0.91640 0.94518 0.92231 0.91837 0.91684 0.92917 0.94298 0.90228 0.94613 0.90700 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.71 37.16 0.36 -2.41 16 2 C -0.11 -2.65 5.09 -26.73 -0.14 -2.79 16 3 C 0.22 5.29 1.73 -68.87 -0.12 5.17 16 4 H 0.04 1.07 7.99 -51.93 -0.42 0.66 16 5 C -0.54 -14.54 7.23 -34.44 -0.25 -14.79 16 6 H 0.06 1.58 5.84 -52.49 -0.31 1.27 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.90 11.30 55.43 0.63 -24.27 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.53 -11.19 4.05 -228.08 -0.92 -12.11 16 14 C 0.06 1.15 5.19 -3.83 -0.02 1.13 16 15 C -0.11 -1.75 6.09 -26.64 -0.16 -1.91 16 16 C -0.14 -2.13 5.63 -26.60 -0.15 -2.28 16 17 C 0.09 1.53 2.77 -26.65 -0.07 1.46 16 18 H 0.06 1.00 7.79 -51.93 -0.40 0.59 16 19 O -0.39 -6.53 10.35 -35.23 -0.36 -6.90 16 20 C 0.03 0.42 10.82 101.05 1.09 1.51 16 21 C 0.07 1.40 4.44 -3.84 -0.02 1.38 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.88 7.84 -51.93 -0.41 0.48 16 25 H 0.09 2.44 6.01 -51.93 -0.31 2.13 16 26 H 0.03 0.81 6.31 -51.93 -0.33 0.48 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 29 H 0.04 0.77 7.27 -51.93 -0.38 0.39 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.71 7.95 -51.93 -0.41 0.30 16 34 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.39 7.95 -51.93 -0.41 -0.02 16 37 H 0.07 1.61 6.15 -51.92 -0.32 1.29 16 38 H 0.05 1.05 6.39 -51.93 -0.33 0.72 16 LS Contribution 291.31 15.07 4.39 4.39 Total: -1.00 -27.77 291.31 -7.39 -35.17 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.53 Total: -0.85 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 0.43 Total: -11.75 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.30 Total: -36.38 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.36 Total: -6.90 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.77 -7.39 -35.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299908404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.917 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds