Wall clock time and date at job start Sun Mar 29 2020 21:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46868 * 2 1 4 4 H 1.08998 * 109.47015 * 302.40997 * 3 2 1 5 5 C 1.50698 * 109.46642 * 182.41532 * 3 2 1 6 6 H 1.08002 * 120.00404 * 239.99448 * 5 3 2 7 7 C 1.37882 * 120.00372 * 60.00079 * 5 3 2 8 8 N 1.31517 * 119.99442 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00275 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46977 * 120.00223 * 9 7 5 12 12 H 1.48500 * 109.47228 * 239.99947 * 9 7 5 13 13 N 1.46892 * 109.47214 * 62.41649 * 3 2 1 14 14 C 1.46844 * 110.99807 * 189.68878 * 13 3 2 15 15 C 1.53046 * 109.52459 * 174.15950 * 14 13 3 16 16 C 1.53125 * 109.30690 * 59.15902 * 15 14 13 17 17 C 1.53122 * 109.15887 * 302.40376 * 16 15 14 18 18 H 1.08995 * 109.50769 * 297.63744 * 17 16 15 19 19 O 1.42900 * 109.50100 * 177.55536 * 17 16 15 20 20 C 1.42905 * 113.99719 * 90.16169 * 19 17 16 21 21 C 1.46843 * 111.00311 * 65.48002 * 13 3 2 22 22 H 1.08993 * 109.47344 * 54.65908 * 1 2 3 23 23 H 1.09000 * 109.47216 * 174.66692 * 1 2 3 24 24 H 1.09004 * 109.46858 * 294.66130 * 1 2 3 25 25 H 1.09001 * 109.46590 * 240.00136 * 2 1 3 26 26 H 1.09000 * 109.47198 * 119.99665 * 2 1 3 27 27 H 0.97003 * 119.99517 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.46711 * 54.14702 * 14 13 3 29 29 H 1.09006 * 109.46590 * 294.17215 * 14 13 3 30 30 H 1.08999 * 109.50408 * 179.11920 * 15 14 13 31 31 H 1.08997 * 109.49970 * 299.20235 * 15 14 13 32 32 H 1.08997 * 109.52325 * 62.27058 * 16 15 14 33 33 H 1.08999 * 109.51820 * 182.46065 * 16 15 14 34 34 H 1.09001 * 109.46995 * 59.99778 * 20 19 17 35 35 H 1.08996 * 109.46761 * 179.97438 * 20 19 17 36 36 H 1.08997 * 109.47068 * 299.99966 * 20 19 17 37 37 H 1.09008 * 109.46329 * 305.85555 * 21 13 3 38 38 H 1.08997 * 109.46653 * 65.83009 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6417 1.9687 -0.8676 5 6 3.5457 1.4429 -0.0599 6 1 4.1177 1.8994 0.7344 7 6 4.1934 0.8607 -1.1288 8 7 3.4969 0.3045 -2.0959 9 14 6.0599 0.8618 -1.2034 10 1 6.6029 1.5447 -0.0017 11 1 6.5545 -0.5379 -1.2426 12 1 6.5061 1.5788 -2.4249 13 7 1.5985 2.1180 1.2275 14 6 1.8689 3.5598 1.1611 15 6 1.2676 4.2500 2.3876 16 6 1.8834 3.6541 3.6566 17 6 1.6303 2.1441 3.6768 18 1 0.5573 1.9553 3.7097 19 8 2.2511 1.5717 4.8296 20 6 1.4078 1.5282 5.9825 21 6 2.2211 1.5151 2.4129 22 1 -0.3633 0.5944 -0.8382 23 1 -0.3633 -1.0232 -0.0955 24 1 -0.3633 0.4288 0.9340 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9526 -0.1054 -2.8478 28 1 1.4215 3.9720 0.2567 29 1 2.9459 3.7269 1.1420 30 1 1.4819 5.3179 2.3459 31 1 0.1886 4.0955 2.3995 32 1 2.9568 3.8431 3.6640 33 1 1.4258 4.1125 4.5333 34 1 0.5232 0.9303 5.7633 35 1 1.9520 1.0801 6.8138 36 1 1.1050 2.5406 6.2496 37 1 2.0295 0.4420 2.4177 38 1 3.2964 1.6918 2.3881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299908404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:53 Heat of formation + Delta-G solvation = -72.542085 kcal Electronic energy + Delta-G solvation = -17071.415906 eV Core-core repulsion = 14526.701038 eV Total energy + Delta-G solvation = -2544.714868 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43278 -38.32359 -35.89123 -33.78935 -32.06310 -31.06100 -28.45665 -27.29265 -25.60638 -24.16063 -23.32177 -21.22799 -20.68760 -18.33148 -17.67718 -16.99631 -16.46648 -16.03158 -15.72108 -15.41298 -14.95132 -14.66086 -14.35551 -14.11125 -13.82647 -13.35760 -13.17361 -13.05409 -12.81072 -12.59950 -12.46793 -12.20691 -11.94978 -11.86850 -11.61202 -11.51837 -11.44007 -11.19260 -10.97153 -10.45329 -10.31761 -8.96104 -8.05036 -6.26651 1.33452 1.36742 1.46537 2.38609 2.73133 3.13358 3.61263 3.91936 3.99539 4.15029 4.32032 4.48388 4.56887 4.58562 4.60238 4.72670 4.74782 4.83168 4.89001 4.93578 5.00487 5.01883 5.07386 5.12548 5.22076 5.30284 5.42294 5.46121 5.50311 5.63713 5.78633 6.04067 6.18165 6.33867 6.38741 6.67625 6.93625 7.43739 8.90418 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025209 B = 0.008874 C = 0.008210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.428942 B = 3154.350826 C = 3409.474014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C 0.220 3.780 4 H 0.010 0.990 5 C -0.552 4.552 6 H 0.045 0.955 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.523 5.523 14 C 0.056 3.944 15 C -0.102 4.102 16 C -0.132 4.132 17 C 0.098 3.902 18 H 0.074 0.926 19 O -0.414 6.414 20 C 0.027 3.973 21 C 0.073 3.927 22 H 0.036 0.964 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.062 0.938 29 H 0.011 0.989 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.922 4.648 11.503 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.028 0.972 5 C -0.591 4.591 6 H 0.063 0.937 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.204 1.204 13 N -0.248 5.248 14 C -0.072 4.072 15 C -0.140 4.140 16 C -0.170 4.170 17 C 0.040 3.960 18 H 0.092 0.908 19 O -0.333 6.333 20 C -0.069 4.069 21 C -0.055 4.055 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -6.226 4.427 11.380 13.706 hybrid contribution 1.980 -0.075 -0.589 2.067 sum -4.247 4.352 10.791 12.386 Atomic orbital electron populations 1.21544 0.95933 0.99678 1.00913 1.21449 0.94747 0.98109 1.00192 1.19068 0.91431 0.91523 0.86642 0.97215 1.21994 0.94136 1.36959 1.05987 0.93700 1.25576 1.01834 0.94945 0.95378 1.69998 1.36249 1.38270 1.10322 0.85729 0.81682 0.77788 0.77773 1.20118 1.20517 1.20368 1.62298 1.57129 1.02709 1.02626 1.21998 0.97519 0.88928 0.98782 1.21511 1.00806 0.99405 0.92242 1.22005 1.00920 0.95043 0.99055 1.22083 0.96670 0.92666 0.84537 0.90794 1.87856 1.41763 1.82959 1.20696 1.22967 0.95043 1.01392 0.87536 1.21739 0.95818 0.98460 0.89504 0.94471 0.93671 0.92488 0.91908 0.95442 0.92861 0.91978 0.97092 0.89642 0.90385 0.93186 0.89668 0.93402 0.88536 0.92793 0.92306 0.96945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.71 71.98 0.70 -4.22 16 2 C -0.11 -5.16 5.09 30.60 0.16 -5.01 16 3 C 0.22 11.14 1.73 44.17 0.08 11.22 16 4 H 0.01 0.56 7.99 -2.39 -0.02 0.54 16 5 C -0.55 -30.60 7.23 25.60 0.18 -30.41 16 6 H 0.04 2.56 5.84 -2.91 -0.02 2.54 16 7 C 0.02 1.26 5.30 84.66 0.45 1.71 16 8 N -0.91 -52.32 11.30 21.45 0.24 -52.07 16 9 Si 0.94 44.64 29.54 68.60 2.03 46.66 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 N -0.52 -22.18 4.05 -875.51 -3.54 -25.72 16 14 C 0.06 2.15 5.19 86.33 0.45 2.60 16 15 C -0.10 -2.88 6.09 30.65 0.19 -2.69 16 16 C -0.13 -3.76 5.63 30.68 0.17 -3.59 16 17 C 0.10 3.19 2.77 30.65 0.08 3.27 16 18 H 0.07 2.21 7.79 -2.39 -0.02 2.19 16 19 O -0.41 -13.23 10.35 -148.98 -1.54 -14.77 16 20 C 0.03 0.57 10.82 113.37 1.23 1.80 16 21 C 0.07 3.04 4.44 86.33 0.38 3.42 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 2.13 7.84 -2.38 -0.02 2.11 16 25 H 0.06 3.42 6.01 -2.39 -0.01 3.41 16 26 H 0.03 1.33 6.31 -2.39 -0.02 1.31 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.06 2.38 8.02 -2.39 -0.02 2.36 16 29 H 0.01 0.47 7.27 -2.38 -0.02 0.45 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.92 7.95 -2.39 -0.02 1.90 16 34 H 0.05 0.94 8.09 -2.39 -0.02 0.92 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 0.97 7.95 -2.39 -0.02 0.95 16 37 H 0.06 2.58 6.15 -2.38 -0.01 2.56 16 38 H 0.01 0.59 6.39 -2.39 -0.02 0.57 16 Total: -1.00 -61.03 291.31 2.26 -58.77 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.01 Total: 9.03 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 4.07 Total: -21.90 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -3.30 Total: -77.80 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.54 Total: -14.77 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -61.03 2.26 -58.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299908404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.774 kcal (2) G-P(sol) polarization free energy of solvation -61.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds