Wall clock time and date at job start Sun Mar 29 2020 22:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46948 * 2 1 4 4 C 1.50704 * 109.47569 * 240.00379 * 2 1 3 5 5 H 1.07996 * 120.00008 * 240.00096 * 4 2 1 6 6 C 1.37881 * 119.99536 * 59.99403 * 4 2 1 7 7 N 1.31511 * 120.00424 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99702 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47392 * 89.99906 * 8 6 4 10 10 H 1.48496 * 109.47035 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.46910 * 330.00257 * 8 6 4 12 12 N 1.46897 * 109.47531 * 120.00373 * 2 1 3 13 13 C 1.46902 * 111.00451 * 176.05027 * 12 2 1 14 14 C 1.46902 * 110.99733 * 300.00266 * 12 2 1 15 15 C 1.52992 * 109.47194 * 169.99999 * 14 12 2 16 16 H 1.08997 * 110.33899 * 57.74904 * 15 14 12 17 17 C 1.54486 * 110.37490 * 179.97438 * 15 14 12 18 18 C 1.54509 * 104.06282 * 142.80626 * 17 15 14 19 19 C 1.54478 * 104.06361 * 0.02562 * 18 17 15 20 20 H 1.09003 * 110.37395 * 94.96410 * 19 18 17 21 21 C 1.53006 * 110.37287 * 217.18668 * 19 18 17 22 22 O 1.44426 * 104.90108 * 336.07486 * 19 18 17 23 23 H 1.09004 * 109.47167 * 60.00270 * 1 2 3 24 24 H 1.09008 * 109.46840 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47401 * 299.99434 * 1 2 3 26 26 H 0.96999 * 120.00082 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47209 * 183.95168 * 13 12 2 28 28 H 1.08999 * 109.46820 * 303.95010 * 13 12 2 29 29 H 1.09002 * 109.46775 * 63.95039 * 13 12 2 30 30 H 1.08998 * 109.47435 * 49.99944 * 14 12 2 31 31 H 1.08998 * 109.47241 * 289.99877 * 14 12 2 32 32 H 1.08999 * 110.50736 * 24.16503 * 17 15 14 33 33 H 1.08991 * 110.62713 * 261.50880 * 17 15 14 34 34 H 1.09003 * 110.51153 * 241.35445 * 18 17 15 35 35 H 1.09005 * 110.62856 * 118.70548 * 18 17 15 36 36 H 1.09001 * 109.47002 * 58.44875 * 21 19 18 37 37 H 1.08993 * 109.46955 * 178.45312 * 21 19 18 38 38 H 1.09000 * 109.47050 * 298.45141 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3429 -2.1615 -4.4121 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7579 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1870 14 6 1.5486 -0.0265 2.4210 15 6 1.8627 -0.9044 3.6340 16 1 2.9326 -1.1051 3.6895 17 6 1.3760 -0.2225 4.9320 18 6 0.8547 -1.3914 5.7975 19 6 1.0886 -2.6414 4.9203 20 1 2.0385 -3.1115 5.1753 21 6 -0.0605 -3.6366 5.0939 22 8 1.1219 -2.1432 3.5651 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.7094 1.1619 -3.4844 27 1 3.8164 -1.3721 2.0499 28 1 3.8070 -1.2914 0.2718 29 1 3.9192 0.2045 1.2300 30 1 0.4722 0.1322 2.3564 31 1 2.0518 0.9345 2.5280 32 1 0.5718 0.4807 4.7155 33 1 2.2012 0.2845 5.4320 34 1 -0.2072 -1.2661 6.0089 35 1 1.4218 -1.4649 6.7255 36 1 -1.0010 -3.1563 4.8238 37 1 0.1055 -4.4992 4.4488 38 1 -0.1046 -3.9630 6.1330 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299991848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:11 Heat of formation + Delta-G solvation = -45.487061 kcal Electronic energy + Delta-G solvation = -16616.911811 eV Core-core repulsion = 14073.370138 eV Total energy + Delta-G solvation = -2543.541674 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.36767 -36.71143 -32.98270 -31.98921 -31.47385 -29.13062 -27.77215 -25.27759 -24.15953 -22.71771 -21.08460 -20.45720 -19.22286 -16.43710 -16.19188 -15.68470 -14.98334 -14.64095 -13.89188 -13.80647 -13.56803 -13.22823 -12.69531 -12.35148 -12.21622 -11.85437 -11.70709 -11.40579 -11.12745 -11.00520 -10.96233 -10.72436 -10.66527 -10.52014 -10.25864 -10.03580 -9.94345 -9.69813 -9.27310 -8.78666 -8.35330 -7.03176 -5.94999 -3.98772 3.35304 3.41150 3.44684 4.09642 4.45773 4.74279 4.75876 5.01467 5.04164 5.29275 5.35870 5.44110 5.52288 5.62505 5.64899 5.80857 5.87309 5.92585 6.09408 6.14061 6.20266 6.22547 6.28866 6.44206 6.51855 6.85302 6.94306 7.15814 7.22968 7.30726 7.60240 7.82580 7.89908 8.31132 8.40799 8.69620 9.07989 9.65745 11.11978 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042953 B = 0.006158 C = 0.006037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.715118 B = 4545.511937 C = 4636.680838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.211 3.789 3 H -0.004 1.004 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.529 5.529 13 C 0.036 3.964 14 C 0.056 3.944 15 C 0.083 3.917 16 H 0.063 0.937 17 C -0.152 4.152 18 C -0.149 4.149 19 C 0.063 3.937 20 H 0.061 0.939 21 C -0.144 4.144 22 O -0.342 6.342 23 H 0.083 0.917 24 H 0.035 0.965 25 H 0.007 0.993 26 H 0.259 0.741 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.007 0.993 30 H 0.082 0.918 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -3.132 15.101 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.106 3.894 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.253 5.253 13 C -0.113 4.113 14 C -0.072 4.072 15 C 0.025 3.975 16 H 0.081 0.919 17 C -0.191 4.191 18 C -0.187 4.187 19 C 0.004 3.996 20 H 0.079 0.921 21 C -0.201 4.201 22 O -0.261 6.261 23 H 0.102 0.898 24 H 0.055 0.945 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.026 0.974 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.244 -3.586 14.737 15.169 hybrid contribution 0.745 0.551 -0.619 1.114 sum 0.989 -3.036 14.118 14.475 Atomic orbital electron populations 1.21833 0.97714 0.99773 0.99612 1.19247 0.92394 0.91783 0.86019 0.98675 1.21176 1.30794 1.12131 0.89769 0.91845 1.24935 0.95300 0.95101 0.98992 1.69898 1.37163 1.23102 1.23288 0.86521 0.79212 0.79282 0.82509 1.20675 1.21403 1.19974 1.62069 1.08889 1.52520 1.01825 1.22258 0.89082 0.98437 1.01506 1.22184 1.01727 0.93335 0.89987 1.23042 0.95386 0.84912 0.94207 0.91942 1.22985 1.01451 0.98406 0.96225 1.22979 1.01975 0.95089 0.98654 1.22932 0.98307 0.94401 0.83916 0.92132 1.21765 0.98081 0.98999 1.01274 1.89374 1.75178 1.37079 1.24434 0.89794 0.94547 0.97410 0.93078 0.93956 0.90448 0.97428 0.90019 0.95031 0.90635 0.91024 0.90846 0.91182 0.91847 0.91875 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.76 37.15 0.33 -3.04 16 2 C 0.21 5.58 2.06 -68.87 -0.14 5.43 16 3 H 0.00 -0.12 8.14 -51.93 -0.42 -0.55 16 4 C -0.50 -14.14 7.88 -34.44 -0.27 -14.42 16 5 H 0.06 1.80 6.41 -52.49 -0.34 1.46 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -26.08 11.32 55.43 0.63 -25.45 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.53 -12.12 4.59 -236.29 -1.08 -13.20 16 13 C 0.04 0.74 9.05 60.07 0.54 1.29 16 14 C 0.06 1.09 4.39 -3.83 -0.02 1.07 16 15 C 0.08 1.35 3.16 -25.96 -0.08 1.26 16 16 H 0.06 1.00 6.51 -51.93 -0.34 0.66 16 17 C -0.15 -1.92 6.63 -25.16 -0.17 -2.09 16 18 C -0.15 -1.67 6.63 -25.16 -0.17 -1.83 16 19 C 0.06 0.83 3.92 -25.95 -0.10 0.72 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 21 C -0.14 -1.64 9.52 37.16 0.35 -1.29 16 22 O -0.34 -6.11 11.01 -35.23 -0.39 -6.50 16 23 H 0.08 2.32 6.07 -51.93 -0.32 2.01 16 24 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 25 H 0.01 0.16 6.20 -51.93 -0.32 -0.16 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.04 0.77 6.44 -51.93 -0.33 0.43 16 28 H 0.08 1.72 6.10 -51.93 -0.32 1.40 16 29 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 1.64 5.83 -51.93 -0.30 1.34 16 31 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.77 7.87 -51.93 -0.41 0.37 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 294.09 15.07 4.43 4.43 Total: -1.00 -30.26 294.09 -7.70 -37.95 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.44 Total: -2.66 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 0.18 Total: -11.35 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.46 Total: -38.65 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.39 Total: -6.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.26 -7.70 -37.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299991848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.534 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds