Wall clock time and date at job start Sun Mar 29 2020 22:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46948 * 2 1 4 4 C 1.50704 * 109.47569 * 240.00379 * 2 1 3 5 5 H 1.07996 * 120.00008 * 240.00096 * 4 2 1 6 6 C 1.37881 * 119.99536 * 59.99403 * 4 2 1 7 7 N 1.31511 * 120.00424 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99702 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47392 * 89.99906 * 8 6 4 10 10 H 1.48496 * 109.47035 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.46910 * 330.00257 * 8 6 4 12 12 N 1.46897 * 109.47531 * 120.00373 * 2 1 3 13 13 C 1.46902 * 111.00451 * 176.05027 * 12 2 1 14 14 C 1.46902 * 110.99733 * 300.00266 * 12 2 1 15 15 C 1.52992 * 109.47194 * 169.99999 * 14 12 2 16 16 H 1.08997 * 110.33899 * 57.74904 * 15 14 12 17 17 C 1.54486 * 110.37490 * 179.97438 * 15 14 12 18 18 C 1.54509 * 104.06282 * 142.80626 * 17 15 14 19 19 C 1.54478 * 104.06361 * 0.02562 * 18 17 15 20 20 H 1.09003 * 110.37395 * 94.96410 * 19 18 17 21 21 C 1.53006 * 110.37287 * 217.18668 * 19 18 17 22 22 O 1.44426 * 104.90108 * 336.07486 * 19 18 17 23 23 H 1.09004 * 109.47167 * 60.00270 * 1 2 3 24 24 H 1.09008 * 109.46840 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47401 * 299.99434 * 1 2 3 26 26 H 0.96999 * 120.00082 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47209 * 183.95168 * 13 12 2 28 28 H 1.08999 * 109.46820 * 303.95010 * 13 12 2 29 29 H 1.09002 * 109.46775 * 63.95039 * 13 12 2 30 30 H 1.08998 * 109.47435 * 49.99944 * 14 12 2 31 31 H 1.08998 * 109.47241 * 289.99877 * 14 12 2 32 32 H 1.08999 * 110.50736 * 24.16503 * 17 15 14 33 33 H 1.08991 * 110.62713 * 261.50880 * 17 15 14 34 34 H 1.09003 * 110.51153 * 241.35445 * 18 17 15 35 35 H 1.09005 * 110.62856 * 118.70548 * 18 17 15 36 36 H 1.09001 * 109.47002 * 58.44875 * 21 19 18 37 37 H 1.08993 * 109.46955 * 178.45312 * 21 19 18 38 38 H 1.09000 * 109.47050 * 298.45141 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3429 -2.1615 -4.4121 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7579 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 3.4851 -0.7945 1.1870 14 6 1.5486 -0.0265 2.4210 15 6 1.8627 -0.9044 3.6340 16 1 2.9326 -1.1051 3.6895 17 6 1.3760 -0.2225 4.9320 18 6 0.8547 -1.3914 5.7975 19 6 1.0886 -2.6414 4.9203 20 1 2.0385 -3.1115 5.1753 21 6 -0.0605 -3.6366 5.0939 22 8 1.1219 -2.1432 3.5651 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.7094 1.1619 -3.4844 27 1 3.8164 -1.3721 2.0499 28 1 3.8070 -1.2914 0.2718 29 1 3.9192 0.2045 1.2300 30 1 0.4722 0.1322 2.3564 31 1 2.0518 0.9345 2.5280 32 1 0.5718 0.4807 4.7155 33 1 2.2012 0.2845 5.4320 34 1 -0.2072 -1.2661 6.0089 35 1 1.4218 -1.4649 6.7255 36 1 -1.0010 -3.1563 4.8238 37 1 0.1055 -4.4992 4.4488 38 1 -0.1046 -3.9630 6.1330 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299991848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:11 Heat of formation + Delta-G solvation = -65.457120 kcal Electronic energy + Delta-G solvation = -16617.777778 eV Core-core repulsion = 14073.370138 eV Total energy + Delta-G solvation = -2544.407640 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55783 -38.47223 -34.94134 -33.07806 -32.78841 -31.06108 -29.20661 -27.11742 -25.88264 -24.11544 -22.33499 -21.60082 -21.07878 -18.38370 -17.58219 -17.01958 -16.61137 -16.07340 -15.64470 -15.46448 -14.85304 -14.56888 -14.27151 -13.84723 -13.67172 -13.17057 -12.97176 -12.90793 -12.84453 -12.62533 -12.48136 -12.36264 -12.20461 -12.04436 -11.95805 -11.65409 -11.55189 -11.28827 -10.86606 -10.54434 -10.47695 -8.86611 -8.11185 -6.22864 1.41742 1.43277 1.53327 2.42535 2.98348 3.16622 3.38112 3.75506 3.85098 4.04504 4.12353 4.33810 4.40392 4.50788 4.60198 4.62473 4.67879 4.72181 4.80219 4.88910 4.95928 5.00025 5.03148 5.06987 5.10422 5.21205 5.25773 5.28241 5.33684 5.49291 5.72234 5.78327 6.16351 6.26704 6.42322 6.77253 6.91866 7.46023 8.95129 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042953 B = 0.006158 C = 0.006037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.715118 B = 4545.511937 C = 4636.680838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.215 3.785 3 H -0.037 1.037 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.542 5.542 13 C 0.041 3.959 14 C 0.056 3.944 15 C 0.084 3.916 16 H 0.067 0.933 17 C -0.148 4.148 18 C -0.141 4.141 19 C 0.052 3.948 20 H 0.070 0.930 21 C -0.142 4.142 22 O -0.382 6.382 23 H 0.061 0.939 24 H 0.025 0.975 25 H 0.028 0.972 26 H 0.262 0.738 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.009 0.991 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -3.782 16.690 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.109 3.891 3 H -0.019 1.019 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.266 5.266 13 C -0.107 4.107 14 C -0.072 4.072 15 C 0.026 3.974 16 H 0.084 0.916 17 C -0.186 4.186 18 C -0.178 4.178 19 C -0.006 4.006 20 H 0.088 0.912 21 C -0.199 4.199 22 O -0.302 6.302 23 H 0.080 0.920 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.782 -4.241 16.352 16.911 hybrid contribution 0.573 0.748 -1.058 1.417 sum 1.355 -3.493 15.294 15.747 Atomic orbital electron populations 1.21639 0.97521 0.98902 0.99530 1.19052 0.92541 0.90127 0.87421 1.01939 1.21433 1.31120 1.12211 0.91015 0.92412 1.25739 0.95383 0.95785 1.01946 1.70019 1.37846 1.24195 1.24065 0.85495 0.78831 0.78203 0.78725 1.20245 1.20706 1.19270 1.62009 1.10125 1.52552 1.01923 1.22215 0.87949 0.98774 1.01797 1.22246 1.00780 0.94361 0.89815 1.23002 0.95586 0.84624 0.94202 0.91553 1.22972 1.02197 0.98775 0.94631 1.22966 1.02856 0.93029 0.98959 1.23234 0.99392 0.95633 0.82302 0.91232 1.21787 0.97018 0.98117 1.02960 1.89332 1.75514 1.37772 1.27599 0.92036 0.95581 0.95283 0.92904 0.91096 0.92379 0.97216 0.91330 0.94392 0.90911 0.88712 0.90229 0.88377 0.92737 0.92947 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.19 8.76 71.98 0.63 -5.56 16 2 C 0.22 11.64 2.06 44.17 0.09 11.73 16 3 H -0.04 -2.18 8.14 -2.38 -0.02 -2.20 16 4 C -0.52 -29.92 7.88 25.60 0.20 -29.72 16 5 H 0.06 3.32 6.41 -2.91 -0.02 3.30 16 6 C 0.01 0.56 5.30 84.66 0.45 1.01 16 7 N -0.92 -54.54 11.32 21.45 0.24 -54.30 16 8 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.54 -25.01 4.59 -901.48 -4.14 -29.15 16 13 C 0.04 1.69 9.05 127.69 1.16 2.85 16 14 C 0.06 2.15 4.39 86.30 0.38 2.53 16 15 C 0.08 2.59 3.16 31.10 0.10 2.69 16 16 H 0.07 1.98 6.51 -2.39 -0.02 1.96 16 17 C -0.15 -3.31 6.63 31.61 0.21 -3.10 16 18 C -0.14 -2.66 6.63 31.61 0.21 -2.45 16 19 C 0.05 1.25 3.92 31.10 0.12 1.37 16 20 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 21 C -0.14 -2.96 9.52 71.98 0.69 -2.27 16 22 O -0.38 -13.28 11.01 -148.98 -1.64 -14.92 16 23 H 0.06 3.49 6.07 -2.38 -0.01 3.48 16 24 H 0.02 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.03 1.34 6.20 -2.39 -0.01 1.33 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.07 2.49 6.44 -2.39 -0.02 2.48 16 28 H 0.06 2.60 6.10 -2.39 -0.01 2.59 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 2.76 5.83 -2.39 -0.01 2.75 16 31 H 0.04 1.39 8.12 -2.39 -0.02 1.37 16 32 H 0.07 1.67 7.87 -2.39 -0.02 1.66 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.42 7.87 -2.39 -0.02 1.40 16 35 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -65.63 294.09 1.74 -63.89 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.01 Total: 8.41 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 4.23 Total: -20.93 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -3.89 Total: -83.44 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -1.64 Total: -14.92 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -65.63 1.74 -63.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299991848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.564 kcal (2) G-P(sol) polarization free energy of solvation -65.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds