Wall clock time and date at job start Sun Mar 29 2020 21:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47160 * 2 1 4 4 H 1.09003 * 109.47014 * 304.15023 * 3 2 1 5 5 C 1.50698 * 109.47390 * 184.14850 * 3 2 1 6 6 H 1.07994 * 120.00504 * 240.00241 * 5 3 2 7 7 C 1.37881 * 119.99585 * 59.99997 * 5 3 2 8 8 N 1.31518 * 120.00205 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99959 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46978 * 59.99765 * 9 7 5 11 11 H 1.48497 * 109.47578 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47197 * 300.00275 * 9 7 5 13 13 N 1.46899 * 109.46862 * 64.14920 * 3 2 1 14 14 C 1.46907 * 110.99987 * 204.68455 * 13 3 2 15 15 H 1.09003 * 110.05222 * 324.55818 * 14 13 3 16 16 C 1.54262 * 110.03031 * 85.97596 * 14 13 3 17 17 C 1.54890 * 104.19414 * 142.89790 * 16 14 13 18 18 C 1.54962 * 102.77547 * 322.08045 * 17 16 14 19 19 H 1.09000 * 110.47729 * 279.23547 * 18 17 16 20 20 O 1.42898 * 110.52729 * 156.57120 * 18 17 16 21 21 C 1.42900 * 114.00367 * 95.24161 * 20 18 17 22 22 C 1.53867 * 110.03268 * 203.14328 * 14 13 3 23 23 H 1.09000 * 109.46725 * 54.90592 * 1 2 3 24 24 H 1.08993 * 109.47027 * 174.90512 * 1 2 3 25 25 H 1.08996 * 109.47270 * 294.90856 * 1 2 3 26 26 H 1.08997 * 109.47302 * 240.00381 * 2 1 3 27 27 H 1.09001 * 109.47061 * 119.99666 * 2 1 3 28 28 H 0.96999 * 119.99670 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00281 * 80.73400 * 13 3 2 30 30 H 1.09002 * 110.48603 * 261.57542 * 16 14 13 31 31 H 1.08996 * 110.48667 * 24.08437 * 16 14 13 32 32 H 1.09001 * 110.75636 * 80.37343 * 17 16 14 33 33 H 1.09006 * 110.75386 * 203.55953 * 17 16 14 34 34 H 1.09007 * 109.46606 * 60.00158 * 21 20 18 35 35 H 1.08997 * 109.47216 * 179.97438 * 21 20 18 36 36 H 1.08992 * 109.47232 * 300.00351 * 21 20 18 37 37 H 1.09000 * 110.03913 * 0.02562 * 22 14 13 38 38 H 1.09001 * 110.03203 * 121.38353 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6172 1.9774 -0.8505 5 6 3.5435 1.4439 -0.1028 6 1 4.1379 1.8922 0.6795 7 6 4.1602 0.8725 -1.1956 8 7 3.4364 0.3260 -2.1481 9 14 6.0239 0.8734 -1.3228 10 1 6.5994 0.1443 -0.1641 11 1 6.4345 0.2039 -2.5831 12 1 6.5194 2.2733 -1.3224 13 7 1.6339 2.1055 1.2464 14 6 1.5647 3.5622 1.0696 15 1 2.3488 3.8937 0.3887 16 6 0.1811 3.9623 0.5172 17 6 -0.1402 5.2995 1.2298 18 6 0.4187 5.0701 2.6569 19 1 -0.2875 4.4942 3.2549 20 8 0.7087 6.3189 3.2881 21 6 -0.3443 6.8073 4.1216 22 6 1.7154 4.2660 2.4296 23 1 -0.3633 0.5908 -0.8409 24 1 -0.3633 -1.0235 -0.0913 25 1 -0.3633 0.4328 0.9320 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8704 -0.0756 -2.9170 29 1 2.2542 1.8623 2.0041 30 1 0.2286 4.1071 -0.5622 31 1 -0.5628 3.2060 0.7673 32 1 0.3726 6.1293 0.7435 33 1 -1.2158 5.4742 1.2565 34 1 -0.5452 6.0856 4.9135 35 1 -0.0463 7.7579 4.5639 36 1 -1.2442 6.9505 3.5237 37 1 1.8403 3.5268 3.2208 38 1 2.5730 4.9384 2.4090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300366062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:21 Heat of formation + Delta-G solvation = -65.527429 kcal Electronic energy + Delta-G solvation = -16476.822582 eV Core-core repulsion = 13932.411893 eV Total energy + Delta-G solvation = -2544.410689 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.83911 -36.69695 -34.65245 -31.87315 -30.61501 -28.41113 -27.16806 -25.98789 -24.87249 -22.59294 -20.57903 -19.39675 -19.31555 -16.71923 -16.50505 -15.57235 -14.96575 -14.77778 -14.44345 -13.63195 -13.32658 -13.30052 -12.69466 -12.65565 -12.11082 -11.55754 -11.35744 -11.25041 -11.08602 -11.02284 -10.91661 -10.66891 -10.51679 -10.35475 -10.27253 -9.98855 -9.55704 -9.45779 -9.33650 -9.01200 -8.35102 -7.22665 -5.97546 -4.10519 3.29474 3.34560 3.37216 3.89026 4.41157 4.93484 4.95391 5.17128 5.27988 5.29904 5.33690 5.51304 5.57997 5.76735 5.89556 6.01176 6.01722 6.13331 6.30504 6.40415 6.41647 6.51010 6.53262 6.68410 6.74252 6.88293 7.16455 7.19961 7.36332 7.48609 7.63705 7.80287 8.11690 8.19340 8.37716 8.70682 9.02738 9.57129 11.02390 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031047 B = 0.006824 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.650074 B = 4101.909337 C = 4667.697510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.684 5.684 14 C 0.091 3.909 15 H 0.052 0.948 16 C -0.109 4.109 17 C -0.143 4.143 18 C 0.086 3.914 19 H 0.066 0.934 20 O -0.387 6.387 21 C 0.032 3.968 22 C -0.120 4.120 23 H 0.036 0.964 24 H 0.023 0.977 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.327 0.673 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.080 7.771 7.982 13.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.020 4.020 15 H 0.070 0.930 16 C -0.147 4.147 17 C -0.181 4.181 18 C 0.028 3.972 19 H 0.084 0.916 20 O -0.306 6.306 21 C -0.065 4.065 22 C -0.158 4.158 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.560 7.660 7.650 13.204 hybrid contribution 1.774 0.086 -0.150 1.782 sum -5.786 7.746 7.500 12.236 Atomic orbital electron populations 1.21686 0.99050 0.98186 1.00326 1.21499 0.92040 0.99361 1.01612 1.19167 0.92510 0.91071 0.86558 0.94925 1.21853 0.92802 1.37963 1.05849 0.92964 1.24928 0.97895 0.95005 0.95654 1.69869 1.34946 1.37998 1.09556 0.86728 0.86171 0.78173 0.77333 1.20306 1.21250 1.20420 1.61091 1.55900 1.04956 1.09419 1.21882 0.96224 0.89800 0.94055 0.92986 1.22332 0.97979 0.95198 0.99217 1.22957 0.99982 0.99079 0.96072 1.23064 0.97293 0.83976 0.92820 0.91606 1.87915 1.40817 1.38295 1.63525 1.22718 0.90957 0.99210 0.93570 1.22401 0.96745 0.98271 0.98407 0.94472 0.95776 0.93507 0.89249 0.95179 0.92865 0.85609 0.92077 0.90693 0.91036 0.92193 0.94297 0.90140 0.94325 0.91055 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.73 37.16 0.36 -2.41 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.21 5.26 1.83 -68.86 -0.13 5.13 16 4 H 0.03 0.89 7.71 -51.93 -0.40 0.49 16 5 C -0.55 -14.66 8.27 -34.44 -0.28 -14.95 16 6 H 0.05 1.40 7.75 -52.49 -0.41 0.99 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -25.02 11.30 55.43 0.63 -24.40 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.68 -14.08 5.50 -99.78 -0.55 -14.63 16 14 C 0.09 1.70 3.03 -66.60 -0.20 1.50 16 15 H 0.05 1.12 7.67 -51.93 -0.40 0.72 16 16 C -0.11 -1.82 6.30 -25.07 -0.16 -1.98 16 17 C -0.14 -2.03 6.62 -24.70 -0.16 -2.20 16 18 C 0.09 1.24 3.35 -25.03 -0.08 1.15 16 19 H 0.07 0.89 7.82 -51.93 -0.41 0.48 16 20 O -0.39 -5.53 10.42 -35.23 -0.37 -5.90 16 21 C 0.03 0.33 10.85 101.05 1.10 1.43 16 22 C -0.12 -1.93 6.24 -25.62 -0.16 -2.09 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 26 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.33 6.69 7.76 -39.29 -0.30 6.39 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.11 7.50 -51.93 -0.39 0.72 16 38 H 0.07 1.15 8.07 -51.93 -0.42 0.74 16 LS Contribution 302.76 15.07 4.56 4.56 Total: -1.00 -27.74 302.76 -7.51 -35.25 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.80 Total: 4.26 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 0.04 Total: -15.34 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.08 Total: -39.02 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.37 Total: -5.90 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.74 -7.51 -35.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300366062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.279 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds