Wall clock time and date at job start Sun Mar 29 2020 21:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47160 * 2 1 4 4 H 1.09003 * 109.47014 * 304.15023 * 3 2 1 5 5 C 1.50698 * 109.47390 * 184.14850 * 3 2 1 6 6 H 1.07994 * 120.00504 * 240.00241 * 5 3 2 7 7 C 1.37881 * 119.99585 * 59.99997 * 5 3 2 8 8 N 1.31518 * 120.00205 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99959 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46978 * 59.99765 * 9 7 5 11 11 H 1.48497 * 109.47578 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47197 * 300.00275 * 9 7 5 13 13 N 1.46899 * 109.46862 * 64.14920 * 3 2 1 14 14 C 1.46907 * 110.99987 * 204.68455 * 13 3 2 15 15 H 1.09003 * 110.05222 * 324.55818 * 14 13 3 16 16 C 1.54262 * 110.03031 * 85.97596 * 14 13 3 17 17 C 1.54890 * 104.19414 * 142.89790 * 16 14 13 18 18 C 1.54962 * 102.77547 * 322.08045 * 17 16 14 19 19 H 1.09000 * 110.47729 * 279.23547 * 18 17 16 20 20 O 1.42898 * 110.52729 * 156.57120 * 18 17 16 21 21 C 1.42900 * 114.00367 * 95.24161 * 20 18 17 22 22 C 1.53867 * 110.03268 * 203.14328 * 14 13 3 23 23 H 1.09000 * 109.46725 * 54.90592 * 1 2 3 24 24 H 1.08993 * 109.47027 * 174.90512 * 1 2 3 25 25 H 1.08996 * 109.47270 * 294.90856 * 1 2 3 26 26 H 1.08997 * 109.47302 * 240.00381 * 2 1 3 27 27 H 1.09001 * 109.47061 * 119.99666 * 2 1 3 28 28 H 0.96999 * 119.99670 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00281 * 80.73400 * 13 3 2 30 30 H 1.09002 * 110.48603 * 261.57542 * 16 14 13 31 31 H 1.08996 * 110.48667 * 24.08437 * 16 14 13 32 32 H 1.09001 * 110.75636 * 80.37343 * 17 16 14 33 33 H 1.09006 * 110.75386 * 203.55953 * 17 16 14 34 34 H 1.09007 * 109.46606 * 60.00158 * 21 20 18 35 35 H 1.08997 * 109.47216 * 179.97438 * 21 20 18 36 36 H 1.08992 * 109.47232 * 300.00351 * 21 20 18 37 37 H 1.09000 * 110.03913 * 0.02562 * 22 14 13 38 38 H 1.09001 * 110.03203 * 121.38353 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6172 1.9774 -0.8505 5 6 3.5435 1.4439 -0.1028 6 1 4.1379 1.8922 0.6795 7 6 4.1602 0.8725 -1.1956 8 7 3.4364 0.3260 -2.1481 9 14 6.0239 0.8734 -1.3228 10 1 6.5994 0.1443 -0.1641 11 1 6.4345 0.2039 -2.5831 12 1 6.5194 2.2733 -1.3224 13 7 1.6339 2.1055 1.2464 14 6 1.5647 3.5622 1.0696 15 1 2.3488 3.8937 0.3887 16 6 0.1811 3.9623 0.5172 17 6 -0.1402 5.2995 1.2298 18 6 0.4187 5.0701 2.6569 19 1 -0.2875 4.4942 3.2549 20 8 0.7087 6.3189 3.2881 21 6 -0.3443 6.8073 4.1216 22 6 1.7154 4.2660 2.4296 23 1 -0.3633 0.5908 -0.8409 24 1 -0.3633 -1.0235 -0.0913 25 1 -0.3633 0.4328 0.9320 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8704 -0.0756 -2.9170 29 1 2.2542 1.8623 2.0041 30 1 0.2286 4.1071 -0.5622 31 1 -0.5628 3.2060 0.7673 32 1 0.3726 6.1293 0.7435 33 1 -1.2158 5.4742 1.2565 34 1 -0.5452 6.0856 4.9135 35 1 -0.0463 7.7579 4.5639 36 1 -1.2442 6.9505 3.5237 37 1 1.8403 3.5268 3.2208 38 1 2.5730 4.9384 2.4090 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300366062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:20 Heat of formation + Delta-G solvation = -82.721822 kcal Electronic energy + Delta-G solvation = -16477.568187 eV Core-core repulsion = 13932.411893 eV Total energy + Delta-G solvation = -2545.156294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09231 -38.14463 -36.26175 -33.84127 -32.27258 -29.65565 -28.76512 -27.23457 -26.35791 -24.45000 -21.85921 -21.20099 -20.79275 -18.58657 -17.82564 -16.89984 -16.61973 -16.09781 -15.78529 -15.30304 -14.85417 -14.73575 -14.33953 -14.03252 -13.51342 -13.24632 -13.08329 -12.94663 -12.63934 -12.50511 -12.27799 -12.20387 -12.13712 -11.82734 -11.69020 -11.52319 -11.43224 -11.29277 -10.93501 -10.46229 -10.39904 -9.03753 -8.04916 -6.27151 1.38511 1.38763 1.46447 2.39915 2.88709 3.14432 3.65754 3.71603 3.74134 4.24058 4.46152 4.52530 4.55709 4.58982 4.63008 4.68069 4.75594 4.78741 4.87213 4.90061 4.97049 5.00528 5.09659 5.18091 5.22349 5.31423 5.39017 5.46750 5.55094 5.68221 5.81254 6.13518 6.22837 6.36604 6.42668 6.85958 7.04147 7.44358 8.91142 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031047 B = 0.006824 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.650074 B = 4101.909337 C = 4667.697510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.224 3.776 4 H -0.001 1.001 5 C -0.561 4.561 6 H 0.047 0.953 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.671 5.671 14 C 0.088 3.912 15 H 0.015 0.985 16 C -0.105 4.105 17 C -0.133 4.133 18 C 0.094 3.906 19 H 0.082 0.918 20 O -0.407 6.407 21 C 0.024 3.976 22 C -0.115 4.115 23 H 0.030 0.970 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.328 0.672 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.822 8.398 9.413 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.017 0.983 5 C -0.600 4.600 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.300 5.300 14 C -0.022 4.022 15 H 0.033 0.967 16 C -0.143 4.143 17 C -0.171 4.171 18 C 0.036 3.964 19 H 0.100 0.900 20 O -0.327 6.327 21 C -0.072 4.072 22 C -0.153 4.153 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.311 8.300 9.097 14.857 hybrid contribution 1.995 -0.066 -0.578 2.078 sum -6.315 8.234 8.520 13.426 Atomic orbital electron populations 1.21540 0.96259 0.99467 1.00709 1.21362 0.94520 0.98358 0.99951 1.18916 0.91178 0.91434 0.86996 0.98286 1.22176 0.94264 1.37756 1.05843 0.93429 1.25648 1.02044 0.94807 0.95450 1.69999 1.36464 1.38553 1.09916 0.85771 0.81218 0.78093 0.77491 1.19641 1.20795 1.20290 1.61062 1.55185 1.06066 1.07695 1.21922 0.96407 0.88670 0.95249 0.96666 1.22250 0.96597 0.96865 0.98598 1.22894 1.01546 0.97048 0.95610 1.22928 0.96069 0.84295 0.93096 0.89975 1.87884 1.42637 1.37964 1.64169 1.22967 0.90491 1.00146 0.93573 1.22299 0.97933 0.98405 0.96688 0.95114 0.93845 0.92182 0.92275 0.95351 0.92907 0.85470 0.93522 0.90574 0.91541 0.89645 0.93164 0.88567 0.93157 0.90331 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.73 71.98 0.70 -4.20 16 2 C -0.10 -4.97 5.45 30.60 0.17 -4.80 16 3 C 0.22 11.19 1.83 44.17 0.08 11.27 16 4 H 0.00 -0.05 7.71 -2.39 -0.02 -0.07 16 5 C -0.56 -30.78 8.27 25.60 0.21 -30.57 16 6 H 0.05 2.59 7.75 -2.91 -0.02 2.57 16 7 C 0.02 1.14 5.30 84.66 0.45 1.59 16 8 N -0.91 -52.52 11.30 21.45 0.24 -52.27 16 9 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.67 -27.69 5.50 -469.59 -2.58 -30.27 16 14 C 0.09 3.32 3.03 45.63 0.14 3.46 16 15 H 0.02 0.68 7.67 -2.39 -0.02 0.66 16 16 C -0.10 -3.46 6.30 31.67 0.20 -3.26 16 17 C -0.13 -3.53 6.62 31.91 0.21 -3.32 16 18 C 0.09 2.48 3.35 31.69 0.11 2.59 16 19 H 0.08 1.93 7.82 -2.39 -0.02 1.91 16 20 O -0.41 -10.67 10.42 -148.98 -1.55 -12.22 16 21 C 0.02 0.43 10.85 113.37 1.23 1.66 16 22 C -0.12 -3.60 6.24 31.32 0.20 -3.40 16 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 2.23 7.87 -2.39 -0.02 2.21 16 26 H 0.06 3.22 5.97 -2.39 -0.01 3.21 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.33 13.38 7.76 -89.69 -0.70 12.68 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 2.50 8.05 -2.39 -0.02 2.48 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.05 0.77 8.11 -2.38 -0.02 0.76 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 2.33 7.50 -2.39 -0.02 2.31 16 38 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 Total: -1.00 -59.70 302.76 2.13 -57.57 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.31 Total: 20.24 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 3.69 Total: -28.99 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -2.34 Total: -82.54 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.55 Total: -12.22 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -59.70 2.13 -57.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300366062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.152 kcal (2) G-P(sol) polarization free energy of solvation -59.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds