Wall clock time and date at job start Sun Mar 29 2020 21:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46893 * 2 1 4 4 H 1.09002 * 109.47106 * 174.04637 * 3 2 1 5 5 C 1.50697 * 109.47451 * 54.04476 * 3 2 1 6 6 H 1.08007 * 119.99655 * 240.00124 * 5 3 2 7 7 C 1.37872 * 120.00443 * 59.99442 * 5 3 2 8 8 N 1.31516 * 119.99731 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00363 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47064 * 90.00451 * 9 7 5 11 11 H 1.48502 * 109.47410 * 210.00229 * 9 7 5 12 12 H 1.48498 * 109.47197 * 330.00325 * 9 7 5 13 13 N 1.46901 * 109.47172 * 294.04232 * 3 2 1 14 14 C 1.46910 * 111.00015 * 275.15168 * 13 3 2 15 15 C 1.52999 * 109.46830 * 176.98983 * 14 13 3 16 16 H 1.08997 * 110.53950 * 56.16501 * 15 14 13 17 17 C 1.54263 * 110.48595 * 293.54315 * 15 14 13 18 18 C 1.53871 * 106.64056 * 217.73850 * 17 15 14 19 19 C 1.54267 * 106.60202 * 359.97438 * 18 17 15 20 20 H 1.08994 * 110.48752 * 264.80296 * 19 18 17 21 21 O 1.42899 * 110.48946 * 142.28319 * 19 18 17 22 22 C 1.54891 * 104.19081 * 23.60812 * 19 18 17 23 23 H 1.09000 * 109.47386 * 298.64460 * 1 2 3 24 24 H 1.09002 * 109.47163 * 58.64447 * 1 2 3 25 25 H 1.09000 * 109.47133 * 178.63705 * 1 2 3 26 26 H 1.08993 * 109.47317 * 240.00276 * 2 1 3 27 27 H 1.08993 * 109.47130 * 119.99316 * 2 1 3 28 28 H 0.96998 * 120.00340 * 179.97438 * 8 7 5 29 29 H 1.00899 * 110.99831 * 39.10618 * 13 3 2 30 30 H 1.09000 * 109.46967 * 56.99105 * 14 13 3 31 31 H 1.08998 * 109.46981 * 296.99136 * 14 13 3 32 32 H 1.09006 * 110.02954 * 98.42965 * 17 15 14 33 33 H 1.08993 * 110.03592 * 337.05135 * 17 15 14 34 34 H 1.09005 * 110.03310 * 119.26144 * 18 17 15 35 35 H 1.08995 * 110.03504 * 240.69330 * 18 17 15 36 36 H 0.96697 * 113.99725 * 61.45887 * 21 19 18 37 37 H 1.09002 * 110.75736 * 80.37560 * 22 19 18 38 38 H 1.09002 * 110.75446 * 203.55629 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1247 1.4444 0.1066 5 6 1.4209 2.1943 1.1501 6 1 0.8141 3.0674 0.9603 7 6 1.6289 1.7674 2.4444 8 7 2.3681 0.7045 2.6755 9 14 0.8610 2.6988 3.8699 10 1 -0.4813 2.1353 4.1636 11 1 1.7260 2.5683 5.0699 12 1 0.7276 4.1332 3.5096 13 7 1.6711 2.0923 -1.2648 14 6 2.6606 1.8055 -2.3121 15 6 2.2050 2.4348 -3.6302 16 1 2.0403 3.5051 -3.5062 17 6 0.9228 1.7467 -4.1422 18 6 1.0497 1.6618 -5.6734 19 6 2.4047 2.3020 -6.0396 20 1 2.2715 3.3501 -6.3073 21 8 3.0218 1.5874 -7.1122 22 6 3.2475 2.1728 -4.7465 23 1 -0.3634 0.4926 0.9019 24 1 -0.3633 0.5348 -0.8776 25 1 -0.3633 -1.0274 -0.0244 26 1 1.8933 -0.5137 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 2.5148 0.4044 3.5861 29 1 0.7455 1.8164 -1.5566 30 1 2.7544 0.7268 -2.4378 31 1 3.6255 2.2230 -2.0245 32 1 0.0482 2.3386 -3.8722 33 1 0.8413 0.7459 -3.7183 34 1 1.0307 0.6197 -5.9924 35 1 0.2367 2.2125 -6.1465 36 1 2.5076 1.5862 -7.9311 37 1 3.6653 1.1701 -4.6562 38 1 4.0384 2.9226 -4.7244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300372895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:01 Heat of formation + Delta-G solvation = -74.987887 kcal Electronic energy + Delta-G solvation = -16334.585436 eV Core-core repulsion = 13789.764511 eV Total energy + Delta-G solvation = -2544.820925 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.91917 -36.63566 -35.09073 -32.36939 -30.71815 -28.85250 -27.75696 -25.87025 -23.38925 -22.94971 -20.61716 -19.74077 -19.13260 -17.16870 -16.10255 -15.96610 -15.05953 -14.71919 -14.19934 -13.55118 -13.47221 -13.09630 -12.99357 -12.42782 -12.09208 -11.99602 -11.81001 -11.49768 -11.08282 -10.88438 -10.73536 -10.54022 -10.46092 -10.43070 -10.23699 -9.97627 -9.90503 -9.67668 -9.49384 -8.92273 -8.31341 -7.14580 -5.93998 -3.95396 3.34196 3.41098 3.45571 4.10619 4.47729 4.61303 4.68972 4.98019 5.24820 5.37664 5.39888 5.48171 5.63799 5.69278 5.79190 5.88205 5.98845 6.11698 6.19228 6.28201 6.28777 6.37747 6.39182 6.54698 6.61956 6.68187 6.92943 7.31864 7.34280 7.53765 7.55582 7.73880 7.93232 8.33453 8.61536 8.68546 9.10419 9.68231 11.13175 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051374 B = 0.005433 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.891544 B = 5152.799089 C = 5236.269000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.214 3.786 4 H 0.032 0.968 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.685 5.685 14 C 0.068 3.932 15 C -0.088 4.088 16 H 0.082 0.918 17 C -0.119 4.119 18 C -0.156 4.156 19 C 0.096 3.904 20 H 0.060 0.940 21 O -0.567 6.567 22 C -0.110 4.110 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.021 0.979 26 H 0.010 0.990 27 H 0.091 0.909 28 H 0.258 0.742 29 H 0.325 0.675 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.373 0.627 37 H 0.075 0.925 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 1.182 -14.843 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.106 3.894 4 H 0.050 0.950 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.316 5.316 14 C -0.062 4.062 15 C -0.106 4.106 16 H 0.101 0.899 17 C -0.156 4.156 18 C -0.194 4.194 19 C 0.037 3.963 20 H 0.078 0.922 21 O -0.372 6.372 22 C -0.148 4.148 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.029 0.971 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.144 0.856 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.220 0.780 37 H 0.094 0.906 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.230 1.594 -14.045 14.188 hybrid contribution -1.089 -0.492 0.235 1.218 sum -2.319 1.102 -13.810 14.046 Atomic orbital electron populations 1.21561 0.97731 0.97919 1.01213 1.22094 0.94981 1.01245 1.00129 1.19198 0.96025 0.88594 0.85563 0.95029 1.21076 1.30311 1.11447 0.89790 0.92097 1.24915 0.95604 0.95203 0.98691 1.69888 1.39308 1.24251 1.20227 0.86580 0.78960 0.80376 0.81983 1.20903 1.21454 1.19933 1.60863 1.03926 1.63198 1.03603 1.21899 0.97109 0.96656 0.90542 1.22004 0.93742 1.00857 0.94038 0.89917 1.22121 0.98515 1.01244 0.93748 1.22869 0.97506 1.01431 0.97599 1.22767 0.92144 0.94006 0.87348 0.92180 1.86536 1.50258 1.77195 1.23245 1.22507 0.97595 1.02822 0.91912 0.91538 0.95232 0.95975 0.97134 0.89033 0.93177 0.85642 0.96293 0.91815 0.91448 0.91666 0.91158 0.91941 0.78016 0.90617 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.39 37.16 0.35 -2.38 16 2 C -0.14 -3.43 5.50 -26.73 -0.15 -3.58 16 3 C 0.21 5.34 2.33 -68.86 -0.16 5.18 16 4 H 0.03 0.88 7.84 -51.93 -0.41 0.47 16 5 C -0.49 -13.27 7.35 -34.44 -0.25 -13.52 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.45 16 8 N -0.90 -25.49 11.39 55.43 0.63 -24.86 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 13 N -0.68 -14.47 6.25 -107.94 -0.67 -15.14 16 14 C 0.07 1.22 4.86 -3.82 -0.02 1.21 16 15 C -0.09 -1.26 3.12 -88.92 -0.28 -1.54 16 16 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 17 C -0.12 -1.56 5.49 -25.62 -0.14 -1.70 16 18 C -0.16 -1.71 6.55 -25.61 -0.17 -1.88 16 19 C 0.10 1.09 4.24 -25.07 -0.11 0.98 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 21 O -0.57 -6.40 13.38 -35.23 -0.47 -6.87 16 22 C -0.11 -1.44 6.05 -24.70 -0.15 -1.59 16 23 H 0.07 1.57 7.04 -51.93 -0.37 1.21 16 24 H 0.03 0.57 6.43 -51.93 -0.33 0.24 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.22 7.29 -51.93 -0.38 -0.16 16 27 H 0.09 2.43 6.25 -51.93 -0.32 2.11 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.33 6.53 5.73 -39.29 -0.23 6.31 16 30 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 31 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.93 7.77 -51.93 -0.40 0.53 16 34 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.37 2.49 9.11 45.56 0.41 2.91 16 37 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 295.83 15.07 4.46 4.46 Total: -1.00 -28.99 295.83 -7.98 -36.97 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.74 Total: 6.42 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -1.16 Total: -17.38 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.04 Total: -40.00 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.47 Total: -6.87 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.99 -7.98 -36.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300372895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.015 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds