Wall clock time and date at job start Sun Mar 29 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46893 * 2 1 4 4 H 1.09002 * 109.47106 * 174.04637 * 3 2 1 5 5 C 1.50697 * 109.47451 * 54.04476 * 3 2 1 6 6 H 1.08007 * 119.99655 * 240.00124 * 5 3 2 7 7 C 1.37872 * 120.00443 * 59.99442 * 5 3 2 8 8 N 1.31516 * 119.99731 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00363 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47064 * 90.00451 * 9 7 5 11 11 H 1.48502 * 109.47410 * 210.00229 * 9 7 5 12 12 H 1.48498 * 109.47197 * 330.00325 * 9 7 5 13 13 N 1.46901 * 109.47172 * 294.04232 * 3 2 1 14 14 C 1.46910 * 111.00015 * 275.15168 * 13 3 2 15 15 C 1.52999 * 109.46830 * 176.98983 * 14 13 3 16 16 H 1.08997 * 110.53950 * 56.16501 * 15 14 13 17 17 C 1.54263 * 110.48595 * 293.54315 * 15 14 13 18 18 C 1.53871 * 106.64056 * 217.73850 * 17 15 14 19 19 C 1.54267 * 106.60202 * 359.97438 * 18 17 15 20 20 H 1.08994 * 110.48752 * 264.80296 * 19 18 17 21 21 O 1.42899 * 110.48946 * 142.28319 * 19 18 17 22 22 C 1.54891 * 104.19081 * 23.60812 * 19 18 17 23 23 H 1.09000 * 109.47386 * 298.64460 * 1 2 3 24 24 H 1.09002 * 109.47163 * 58.64447 * 1 2 3 25 25 H 1.09000 * 109.47133 * 178.63705 * 1 2 3 26 26 H 1.08993 * 109.47317 * 240.00276 * 2 1 3 27 27 H 1.08993 * 109.47130 * 119.99316 * 2 1 3 28 28 H 0.96998 * 120.00340 * 179.97438 * 8 7 5 29 29 H 1.00899 * 110.99831 * 39.10618 * 13 3 2 30 30 H 1.09000 * 109.46967 * 56.99105 * 14 13 3 31 31 H 1.08998 * 109.46981 * 296.99136 * 14 13 3 32 32 H 1.09006 * 110.02954 * 98.42965 * 17 15 14 33 33 H 1.08993 * 110.03592 * 337.05135 * 17 15 14 34 34 H 1.09005 * 110.03310 * 119.26144 * 18 17 15 35 35 H 1.08995 * 110.03504 * 240.69330 * 18 17 15 36 36 H 0.96697 * 113.99725 * 61.45887 * 21 19 18 37 37 H 1.09002 * 110.75736 * 80.37560 * 22 19 18 38 38 H 1.09002 * 110.75446 * 203.55629 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1247 1.4444 0.1066 5 6 1.4209 2.1943 1.1501 6 1 0.8141 3.0674 0.9603 7 6 1.6289 1.7674 2.4444 8 7 2.3681 0.7045 2.6755 9 14 0.8610 2.6988 3.8699 10 1 -0.4813 2.1353 4.1636 11 1 1.7260 2.5683 5.0699 12 1 0.7276 4.1332 3.5096 13 7 1.6711 2.0923 -1.2648 14 6 2.6606 1.8055 -2.3121 15 6 2.2050 2.4348 -3.6302 16 1 2.0403 3.5051 -3.5062 17 6 0.9228 1.7467 -4.1422 18 6 1.0497 1.6618 -5.6734 19 6 2.4047 2.3020 -6.0396 20 1 2.2715 3.3501 -6.3073 21 8 3.0218 1.5874 -7.1122 22 6 3.2475 2.1728 -4.7465 23 1 -0.3634 0.4926 0.9019 24 1 -0.3633 0.5348 -0.8776 25 1 -0.3633 -1.0274 -0.0244 26 1 1.8933 -0.5137 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 2.5148 0.4044 3.5861 29 1 0.7455 1.8164 -1.5566 30 1 2.7544 0.7268 -2.4378 31 1 3.6255 2.2230 -2.0245 32 1 0.0482 2.3386 -3.8722 33 1 0.8413 0.7459 -3.7183 34 1 1.0307 0.6197 -5.9924 35 1 0.2367 2.2125 -6.1465 36 1 2.5076 1.5862 -7.9311 37 1 3.6653 1.1701 -4.6562 38 1 4.0384 2.9226 -4.7244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300372895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:00 Heat of formation + Delta-G solvation = -95.334612 kcal Electronic energy + Delta-G solvation = -16335.467737 eV Core-core repulsion = 13789.764511 eV Total energy + Delta-G solvation = -2545.703226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.99212 -38.21582 -36.30439 -34.20991 -32.44368 -30.05901 -29.08333 -27.63571 -25.21700 -24.44412 -21.64495 -21.14356 -20.72197 -18.31990 -17.84154 -17.09527 -16.75668 -16.40204 -15.47150 -15.17845 -14.76885 -14.50496 -14.39784 -14.15401 -13.56807 -13.49309 -13.26120 -12.80355 -12.66011 -12.52136 -12.44625 -12.11722 -11.91539 -11.78720 -11.54242 -11.48398 -11.31710 -11.25531 -10.92230 -10.80263 -10.42907 -8.91215 -8.04523 -6.13311 1.43745 1.45158 1.55388 2.46657 3.21878 3.24428 3.64068 3.68155 3.83510 4.10305 4.34159 4.40308 4.49134 4.51851 4.58337 4.63759 4.67830 4.73076 4.78628 4.90062 4.99195 5.06861 5.10861 5.13622 5.24407 5.36390 5.39735 5.42982 5.51204 5.68221 5.74201 5.85565 6.32774 6.70044 6.89180 6.95021 7.01043 7.54794 9.01180 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051374 B = 0.005433 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.891544 B = 5152.799089 C = 5236.269000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 C 0.218 3.782 4 H -0.007 1.007 5 C -0.500 4.500 6 H 0.053 0.947 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.685 5.685 14 C 0.070 3.930 15 C -0.080 4.080 16 H 0.084 0.916 17 C -0.119 4.119 18 C -0.148 4.148 19 C 0.102 3.898 20 H 0.078 0.922 21 O -0.584 6.584 22 C -0.112 4.112 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.022 0.978 27 H 0.060 0.940 28 H 0.258 0.742 29 H 0.333 0.667 30 H 0.012 0.988 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.394 0.606 37 H 0.061 0.939 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 1.802 -16.269 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.110 3.890 4 H 0.011 0.989 5 C -0.538 4.538 6 H 0.072 0.928 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.317 5.317 14 C -0.059 4.059 15 C -0.099 4.099 16 H 0.102 0.898 17 C -0.156 4.156 18 C -0.185 4.185 19 C 0.043 3.957 20 H 0.096 0.904 21 O -0.392 6.392 22 C -0.151 4.151 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.152 0.848 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.244 0.756 37 H 0.079 0.921 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.562 2.216 -15.504 15.870 hybrid contribution -0.622 -0.701 0.635 1.132 sum -3.184 1.516 -14.869 15.282 Atomic orbital electron populations 1.21442 0.95757 0.99343 1.00948 1.21937 0.96662 1.00052 0.99112 1.18963 0.93505 0.89568 0.86996 0.98911 1.21288 1.30285 1.11391 0.90886 0.92845 1.25622 0.95987 0.95933 1.01039 1.70026 1.40260 1.25417 1.20613 0.85625 0.78305 0.79216 0.78893 1.20083 1.21344 1.19576 1.60738 1.04975 1.62790 1.03182 1.21913 0.95921 0.96498 0.91590 1.21878 0.95079 1.00585 0.92333 0.89792 1.22110 0.97743 1.00257 0.95537 1.22812 0.98131 1.01889 0.95699 1.22681 0.91443 0.95024 0.86562 0.90418 1.86484 1.51166 1.77259 1.24302 1.22479 0.97651 1.02100 0.92822 0.93851 0.93200 0.93834 0.95959 0.92144 0.93248 0.84752 0.96997 0.93256 0.90903 0.93030 0.91154 0.89618 0.75591 0.92060 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.39 71.98 0.68 -4.27 16 2 C -0.14 -6.59 5.50 30.59 0.17 -6.43 16 3 C 0.22 11.13 2.33 44.17 0.10 11.23 16 4 H -0.01 -0.41 7.84 -2.39 -0.02 -0.43 16 5 C -0.50 -27.52 7.35 25.60 0.19 -27.33 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.67 5.22 84.65 0.44 1.11 16 8 N -0.92 -53.43 11.39 21.45 0.24 -53.19 16 9 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.69 -29.01 6.25 -495.43 -3.10 -32.10 16 14 C 0.07 2.56 4.86 86.30 0.42 2.98 16 15 C -0.08 -2.21 3.12 -9.69 -0.03 -2.24 16 16 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 17 C -0.12 -2.88 5.49 31.32 0.17 -2.71 16 18 C -0.15 -2.78 6.55 31.32 0.21 -2.58 16 19 C 0.10 2.02 4.24 31.67 0.13 2.15 16 20 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 21 O -0.58 -11.63 13.38 -148.98 -1.99 -13.62 16 22 C -0.11 -2.80 6.05 31.91 0.19 -2.61 16 23 H 0.04 2.01 7.04 -2.39 -0.02 2.00 16 24 H 0.05 1.86 6.43 -2.39 -0.02 1.85 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.02 0.98 7.29 -2.39 -0.02 0.96 16 27 H 0.06 3.28 6.25 -2.39 -0.01 3.27 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.33 13.09 5.73 -89.69 -0.51 12.58 16 30 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 31 H 0.05 1.91 8.11 -2.39 -0.02 1.89 16 32 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.05 1.39 7.77 -2.39 -0.02 1.37 16 34 H 0.07 1.35 8.07 -2.38 -0.02 1.33 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.39 4.04 9.11 -74.06 -0.67 3.37 16 37 H 0.06 1.70 8.06 -2.39 -0.02 1.68 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -62.22 295.83 -0.30 -62.52 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -0.15 Total: 21.00 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 2.67 Total: -30.69 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -2.85 Total: -85.29 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -1.99 Total: -13.62 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -62.22 -0.30 -62.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300372895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.810 kcal (2) G-P(sol) polarization free energy of solvation -62.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds