Wall clock time and date at job start Sun Mar 29 2020 21:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47080 * 2 1 4 4 H 1.09004 * 109.47333 * 174.05887 * 3 2 1 5 5 C 1.50697 * 109.47313 * 54.06361 * 3 2 1 6 6 H 1.08008 * 120.00024 * 240.00275 * 5 3 2 7 7 C 1.37875 * 120.00553 * 59.99676 * 5 3 2 8 8 N 1.31517 * 119.99407 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00550 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47325 * 59.99533 * 9 7 5 11 11 H 1.48495 * 109.47222 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46721 * 299.99625 * 9 7 5 13 13 N 1.46902 * 109.47597 * 294.05945 * 3 2 1 14 14 C 1.46895 * 110.99888 * 275.35694 * 13 3 2 15 15 C 1.53003 * 109.47427 * 176.72106 * 14 13 3 16 16 H 1.09001 * 110.43237 * 52.44581 * 15 14 13 17 17 C 1.54812 * 110.48562 * 289.76577 * 15 14 13 18 18 C 1.54995 * 102.09264 * 220.44093 * 17 15 14 19 19 O 1.44377 * 103.49290 * 37.02036 * 18 17 15 20 20 C 1.43754 * 106.97297 * 319.94263 * 19 18 17 21 21 H 1.09007 * 109.87728 * 145.93330 * 20 19 18 22 22 C 1.52990 * 109.87727 * 267.08672 * 20 19 18 23 23 H 1.08999 * 109.47160 * 178.59936 * 1 2 3 24 24 H 1.08999 * 109.47293 * 298.60586 * 1 2 3 25 25 H 1.09002 * 109.46910 * 58.60357 * 1 2 3 26 26 H 1.08998 * 109.46824 * 240.00149 * 2 1 3 27 27 H 1.08998 * 109.46992 * 120.00179 * 2 1 3 28 28 H 0.97002 * 120.00116 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99646 * 39.30474 * 13 3 2 30 30 H 1.09005 * 109.47054 * 296.71743 * 14 13 3 31 31 H 1.09000 * 109.47711 * 56.71895 * 14 13 3 32 32 H 1.09006 * 110.90703 * 338.63801 * 17 15 14 33 33 H 1.09006 * 110.91127 * 102.24108 * 17 15 14 34 34 H 1.09006 * 110.61500 * 278.52062 * 18 17 15 35 35 H 1.08995 * 110.75469 * 155.59036 * 18 17 15 36 36 H 1.09004 * 109.47332 * 177.83246 * 22 20 19 37 37 H 1.09004 * 109.47644 * 297.83042 * 22 20 19 38 38 H 1.08993 * 109.47627 * 57.83056 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1249 1.4443 0.1064 5 6 1.4213 2.1940 1.1504 6 1 0.8144 3.0672 0.9609 7 6 1.6298 1.7671 2.4447 8 7 2.3683 0.7035 2.6752 9 14 0.8623 2.6983 3.8705 10 1 -0.6155 2.6954 3.7255 11 1 1.2361 2.0418 5.1490 12 1 1.3569 4.0985 3.8707 13 7 1.6709 2.0924 -1.2646 14 6 2.6575 1.8018 -2.3134 15 6 2.1983 2.4258 -3.6328 16 1 1.9712 3.4829 -3.4950 17 6 0.9657 1.6719 -4.1887 18 6 1.2752 1.6184 -5.7065 19 8 2.7046 1.4208 -5.7521 20 6 3.2750 2.2426 -4.7198 21 1 4.1502 1.7504 -4.2954 22 6 3.6688 3.6038 -5.2967 23 1 -0.3633 -1.0273 -0.0251 24 1 -0.3634 0.4920 0.9022 25 1 -0.3633 0.5354 -0.8772 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.5147 0.4028 3.5858 29 1 0.7439 1.8191 -1.5545 30 1 3.6231 2.2207 -2.0301 31 1 2.7513 0.7226 -2.4352 32 1 0.9021 0.6678 -3.7691 33 1 0.0493 2.2305 -3.9980 34 1 1.0020 2.5578 -6.1872 35 1 0.7569 0.7830 -6.1771 36 1 4.0648 4.2349 -4.5010 37 1 4.4303 3.4666 -6.0644 38 1 2.7921 4.0798 -5.7356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300381228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:36 Heat of formation + Delta-G solvation = -63.861148 kcal Electronic energy + Delta-G solvation = -16536.865931 eV Core-core repulsion = 13992.527497 eV Total energy + Delta-G solvation = -2544.338434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65860 -36.52532 -33.53624 -31.70479 -31.11468 -30.05096 -27.34235 -25.75737 -23.39394 -23.01754 -21.44064 -20.15766 -19.21100 -16.58661 -16.15432 -15.81462 -14.84557 -14.67962 -14.33167 -13.62097 -13.31668 -13.23432 -12.77288 -12.68201 -12.41703 -12.02648 -11.92879 -11.64343 -11.25036 -11.02268 -10.85471 -10.64367 -10.56419 -10.47319 -10.42136 -9.94933 -9.73522 -9.56542 -9.51013 -8.96271 -8.33198 -7.20027 -5.96221 -3.97903 3.34549 3.39046 3.42099 3.99600 4.44015 4.65730 4.84823 4.97055 5.20518 5.29653 5.35337 5.38690 5.57134 5.60757 5.68918 5.76078 5.94181 6.03819 6.06372 6.15901 6.22571 6.31789 6.36209 6.41279 6.52187 6.58404 6.90503 7.01221 7.29052 7.30611 7.51272 7.71205 7.90060 8.30132 8.56639 8.64467 9.07429 9.65720 11.10902 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043037 B = 0.006053 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.445214 B = 4624.605829 C = 4843.085783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.684 5.684 14 C 0.069 3.931 15 C -0.115 4.115 16 H 0.091 0.909 17 C -0.151 4.151 18 C 0.047 3.953 19 O -0.377 6.377 20 C 0.075 3.925 21 H 0.093 0.907 22 C -0.167 4.167 23 H 0.022 0.978 24 H 0.066 0.934 25 H 0.028 0.972 26 H 0.010 0.990 27 H 0.092 0.908 28 H 0.259 0.741 29 H 0.325 0.675 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 1.770 -12.969 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.061 4.061 15 C -0.134 4.134 16 H 0.109 0.891 17 C -0.189 4.189 18 C -0.030 4.030 19 O -0.296 6.296 20 C 0.016 3.984 21 H 0.111 0.889 22 C -0.225 4.225 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.029 0.971 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.743 2.139 -12.777 12.976 hybrid contribution -0.710 -0.388 0.810 1.145 sum -1.453 1.751 -11.966 12.181 Atomic orbital electron populations 1.21561 0.97700 0.97945 1.01210 1.22098 0.95008 1.01201 1.00166 1.19189 0.96022 0.88618 0.85453 0.95028 1.21031 1.30500 1.11499 0.89789 0.92140 1.24915 0.95586 0.95179 0.98694 1.69878 1.39269 1.24106 1.20385 0.86630 0.79599 0.80024 0.81543 1.20404 1.21515 1.20364 1.60886 1.03897 1.63166 1.03550 1.21931 0.97164 0.96807 0.90217 1.22667 0.94077 1.01516 0.95111 0.89112 1.23210 0.98828 1.01632 0.95237 1.23511 0.82277 1.00943 0.96275 1.88871 1.19285 1.66232 1.55251 1.22822 0.96882 0.91396 0.87258 0.88934 1.22254 1.01681 0.97007 1.01551 0.95934 0.91523 0.95263 0.97121 0.88993 0.93079 0.85644 0.91710 0.96040 0.90592 0.90172 0.92588 0.89453 0.91316 0.92320 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.39 37.16 0.35 -2.36 16 2 C -0.15 -3.41 5.50 -26.73 -0.15 -3.55 16 3 C 0.21 5.30 2.33 -68.87 -0.16 5.14 16 4 H 0.03 0.87 7.85 -51.93 -0.41 0.46 16 5 C -0.49 -13.21 7.35 -34.44 -0.25 -13.46 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.55 5.22 -17.82 -0.09 1.46 16 8 N -0.90 -25.33 11.39 55.43 0.63 -24.70 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.68 -14.22 6.25 -107.95 -0.67 -14.90 16 14 C 0.07 1.22 4.65 -3.83 -0.02 1.20 16 15 C -0.11 -1.65 2.90 -89.09 -0.26 -1.90 16 16 H 0.09 1.31 7.70 -51.93 -0.40 0.91 16 17 C -0.15 -1.97 5.99 -24.72 -0.15 -2.12 16 18 C 0.05 0.55 7.66 38.21 0.29 0.85 16 19 O -0.38 -5.41 11.19 -35.23 -0.39 -5.80 16 20 C 0.07 1.00 3.76 -26.17 -0.10 0.90 16 21 H 0.09 1.25 7.69 -51.92 -0.40 0.85 16 22 C -0.17 -1.90 9.30 37.15 0.35 -1.56 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 1.56 7.04 -51.93 -0.37 1.20 16 25 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 26 H 0.01 0.22 7.28 -51.93 -0.38 -0.15 16 27 H 0.09 2.43 6.25 -51.93 -0.32 2.10 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.33 6.45 5.89 -39.29 -0.23 6.21 16 30 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 31 H 0.02 0.40 7.12 -51.93 -0.37 0.03 16 32 H 0.08 1.07 7.77 -51.93 -0.40 0.67 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 LS Contribution 295.93 15.07 4.46 4.46 Total: -1.00 -28.04 295.93 -7.72 -35.77 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.54 Total: 4.31 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -0.19 Total: -15.42 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.04 Total: -39.60 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.39 Total: -5.80 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.04 -7.72 -35.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300381228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.096 kcal (2) G-P(sol) polarization free energy of solvation -28.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds