Wall clock time and date at job start Sun Mar 29 2020 21:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47080 * 2 1 4 4 H 1.09004 * 109.47333 * 174.05887 * 3 2 1 5 5 C 1.50697 * 109.47313 * 54.06361 * 3 2 1 6 6 H 1.08008 * 120.00024 * 240.00275 * 5 3 2 7 7 C 1.37875 * 120.00553 * 59.99676 * 5 3 2 8 8 N 1.31517 * 119.99407 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00550 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47325 * 59.99533 * 9 7 5 11 11 H 1.48495 * 109.47222 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46721 * 299.99625 * 9 7 5 13 13 N 1.46902 * 109.47597 * 294.05945 * 3 2 1 14 14 C 1.46895 * 110.99888 * 275.35694 * 13 3 2 15 15 C 1.53003 * 109.47427 * 176.72106 * 14 13 3 16 16 H 1.09001 * 110.43237 * 52.44581 * 15 14 13 17 17 C 1.54812 * 110.48562 * 289.76577 * 15 14 13 18 18 C 1.54995 * 102.09264 * 220.44093 * 17 15 14 19 19 O 1.44377 * 103.49290 * 37.02036 * 18 17 15 20 20 C 1.43754 * 106.97297 * 319.94263 * 19 18 17 21 21 H 1.09007 * 109.87728 * 145.93330 * 20 19 18 22 22 C 1.52990 * 109.87727 * 267.08672 * 20 19 18 23 23 H 1.08999 * 109.47160 * 178.59936 * 1 2 3 24 24 H 1.08999 * 109.47293 * 298.60586 * 1 2 3 25 25 H 1.09002 * 109.46910 * 58.60357 * 1 2 3 26 26 H 1.08998 * 109.46824 * 240.00149 * 2 1 3 27 27 H 1.08998 * 109.46992 * 120.00179 * 2 1 3 28 28 H 0.97002 * 120.00116 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99646 * 39.30474 * 13 3 2 30 30 H 1.09005 * 109.47054 * 296.71743 * 14 13 3 31 31 H 1.09000 * 109.47711 * 56.71895 * 14 13 3 32 32 H 1.09006 * 110.90703 * 338.63801 * 17 15 14 33 33 H 1.09006 * 110.91127 * 102.24108 * 17 15 14 34 34 H 1.09006 * 110.61500 * 278.52062 * 18 17 15 35 35 H 1.08995 * 110.75469 * 155.59036 * 18 17 15 36 36 H 1.09004 * 109.47332 * 177.83246 * 22 20 19 37 37 H 1.09004 * 109.47644 * 297.83042 * 22 20 19 38 38 H 1.08993 * 109.47627 * 57.83056 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1249 1.4443 0.1064 5 6 1.4213 2.1940 1.1504 6 1 0.8144 3.0672 0.9609 7 6 1.6298 1.7671 2.4447 8 7 2.3683 0.7035 2.6752 9 14 0.8623 2.6983 3.8705 10 1 -0.6155 2.6954 3.7255 11 1 1.2361 2.0418 5.1490 12 1 1.3569 4.0985 3.8707 13 7 1.6709 2.0924 -1.2646 14 6 2.6575 1.8018 -2.3134 15 6 2.1983 2.4258 -3.6328 16 1 1.9712 3.4829 -3.4950 17 6 0.9657 1.6719 -4.1887 18 6 1.2752 1.6184 -5.7065 19 8 2.7046 1.4208 -5.7521 20 6 3.2750 2.2426 -4.7198 21 1 4.1502 1.7504 -4.2954 22 6 3.6688 3.6038 -5.2967 23 1 -0.3633 -1.0273 -0.0251 24 1 -0.3634 0.4920 0.9022 25 1 -0.3633 0.5354 -0.8772 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.5147 0.4028 3.5858 29 1 0.7439 1.8191 -1.5545 30 1 3.6231 2.2207 -2.0301 31 1 2.7513 0.7226 -2.4352 32 1 0.9021 0.6678 -3.7691 33 1 0.0493 2.2305 -3.9980 34 1 1.0020 2.5578 -6.1872 35 1 0.7569 0.7830 -6.1771 36 1 4.0648 4.2349 -4.5010 37 1 4.4303 3.4666 -6.0644 38 1 2.7921 4.0798 -5.7356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300381228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:35 Heat of formation + Delta-G solvation = -81.669845 kcal Electronic energy + Delta-G solvation = -16537.638174 eV Core-core repulsion = 13992.527497 eV Total energy + Delta-G solvation = -2545.110677 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75209 -38.27326 -35.12076 -33.45005 -32.15839 -31.58248 -28.86198 -27.40043 -25.21965 -24.38022 -22.53336 -21.33933 -21.08345 -18.22098 -17.52132 -17.06426 -16.69052 -16.29090 -15.46263 -15.22463 -14.89525 -14.43404 -14.23931 -14.09421 -13.97281 -13.61234 -13.15268 -12.84774 -12.78490 -12.68469 -12.45757 -12.34120 -12.05790 -11.92138 -11.63928 -11.57167 -11.46800 -11.32922 -10.95201 -10.57335 -10.42838 -8.94057 -8.04961 -6.13820 1.44827 1.45681 1.53154 2.46205 3.00321 3.23893 3.44163 3.70026 3.87847 4.12352 4.27338 4.33990 4.38432 4.46557 4.54610 4.60408 4.63956 4.71873 4.74369 4.81766 4.96221 4.97560 5.05754 5.10028 5.13781 5.24651 5.33047 5.39344 5.42507 5.67852 5.73861 5.83999 6.00771 6.31861 6.68154 6.86807 6.99661 7.54208 9.00532 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043037 B = 0.006053 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.445214 B = 4624.605829 C = 4843.085783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 C 0.220 3.780 4 H -0.006 1.006 5 C -0.501 4.501 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.684 5.684 14 C 0.073 3.927 15 C -0.108 4.108 16 H 0.094 0.906 17 C -0.151 4.151 18 C 0.047 3.953 19 O -0.396 6.396 20 C 0.074 3.926 21 H 0.084 0.916 22 C -0.162 4.162 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.060 0.940 28 H 0.259 0.741 29 H 0.333 0.667 30 H 0.053 0.947 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.432 2.474 -14.123 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.111 3.889 4 H 0.012 0.988 5 C -0.540 4.540 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.315 5.315 14 C -0.057 4.057 15 C -0.127 4.127 16 H 0.112 0.888 17 C -0.188 4.188 18 C -0.029 4.029 19 O -0.315 6.315 20 C 0.016 3.984 21 H 0.102 0.898 22 C -0.220 4.220 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.152 0.848 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.959 2.849 -13.950 14.372 hybrid contribution -0.299 -0.626 1.131 1.327 sum -2.258 2.223 -12.819 13.205 Atomic orbital electron populations 1.21443 0.95746 0.99348 1.00955 1.21944 0.96672 1.00064 0.99123 1.18944 0.93544 0.89516 0.86873 0.98819 1.21264 1.30423 1.11450 0.90876 0.92782 1.25620 0.95986 0.95906 1.01038 1.70018 1.40260 1.25295 1.20704 0.85692 0.79111 0.78731 0.78571 1.19524 1.21346 1.20106 1.60754 1.04926 1.62726 1.03102 1.21923 0.96122 0.96512 0.91137 1.22565 0.95271 1.01410 0.93419 0.88819 1.23206 0.98624 1.00840 0.96153 1.23668 0.81103 1.02671 0.95438 1.88854 1.20712 1.66693 1.55267 1.22812 0.96164 0.92425 0.86985 0.89806 1.22201 1.02276 0.95681 1.01794 0.93847 0.93868 0.93166 0.95968 0.92142 0.93221 0.84772 0.92825 0.96929 0.91807 0.88825 0.90760 0.87843 0.90973 0.91610 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.39 71.98 0.68 -4.21 16 2 C -0.14 -6.53 5.50 30.59 0.17 -6.36 16 3 C 0.22 11.02 2.33 44.17 0.10 11.12 16 4 H -0.01 -0.35 7.85 -2.38 -0.02 -0.37 16 5 C -0.50 -27.27 7.35 25.60 0.19 -27.08 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.69 5.22 84.65 0.44 1.13 16 8 N -0.92 -53.01 11.39 21.45 0.24 -52.77 16 9 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 13 N -0.68 -28.23 6.25 -495.45 -3.10 -31.33 16 14 C 0.07 2.57 4.65 86.31 0.40 2.97 16 15 C -0.11 -2.94 2.90 -9.80 -0.03 -2.97 16 16 H 0.09 2.53 7.70 -2.39 -0.02 2.51 16 17 C -0.15 -3.60 5.99 31.90 0.19 -3.41 16 18 C 0.05 0.99 7.66 72.66 0.56 1.55 16 19 O -0.40 -10.58 11.19 -148.98 -1.67 -12.24 16 20 C 0.07 1.88 3.76 30.96 0.12 2.00 16 21 H 0.08 2.24 7.69 -2.38 -0.02 2.22 16 22 C -0.16 -3.35 9.30 71.98 0.67 -2.68 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.04 1.99 7.04 -2.39 -0.02 1.97 16 25 H 0.05 1.84 6.42 -2.39 -0.02 1.83 16 26 H 0.02 0.96 7.28 -2.39 -0.02 0.94 16 27 H 0.06 3.25 6.25 -2.39 -0.01 3.24 16 28 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.33 12.78 5.89 -89.69 -0.53 12.25 16 30 H 0.05 1.99 8.12 -2.38 -0.02 1.97 16 31 H 0.01 0.47 7.12 -2.39 -0.02 0.45 16 32 H 0.06 1.69 7.77 -2.38 -0.02 1.67 16 33 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.07 1.31 8.11 -2.38 -0.02 1.29 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 Total: -1.00 -59.73 295.93 1.48 -58.25 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.49 Total: 20.31 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 3.48 Total: -27.93 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -2.85 Total: -84.10 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.67 Total: -12.24 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -59.73 1.48 -58.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300381228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.417 kcal (2) G-P(sol) polarization free energy of solvation -59.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds