Wall clock time and date at job start Sun Mar 29 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00048 * 2 1 4 4 H 1.08993 * 109.52388 * 330.12517 * 3 2 1 5 5 C 1.53124 * 109.57570 * 90.28502 * 3 2 1 6 6 C 1.53035 * 109.27796 * 177.58874 * 5 3 2 7 7 N 1.46848 * 109.52299 * 300.81845 * 6 5 3 8 8 C 1.46904 * 110.99785 * 185.83852 * 7 6 5 9 9 C 1.52996 * 109.46832 * 45.79275 * 8 7 6 10 10 C 1.50708 * 109.46933 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00065 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99965 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00070 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00029 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47093 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47374 * 119.99397 * 14 12 10 17 17 H 1.48500 * 109.47107 * 239.99924 * 14 12 10 18 18 C 1.46848 * 111.19598 * 61.74565 * 7 6 5 19 19 H 1.09002 * 109.46505 * 58.27071 * 18 7 6 20 20 C 1.53003 * 109.45289 * 178.24362 * 18 7 6 21 21 C 1.53036 * 109.52376 * 298.25362 * 18 7 6 22 22 H 1.09004 * 109.47031 * 59.99457 * 1 2 3 23 23 H 1.08997 * 109.47264 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47033 * 300.00347 * 1 2 3 25 25 H 1.08996 * 109.50044 * 297.53464 * 5 3 2 26 26 H 1.09005 * 109.50178 * 57.64606 * 5 3 2 27 27 H 1.08994 * 109.46449 * 60.83936 * 6 5 3 28 28 H 1.09000 * 109.45876 * 180.81594 * 6 5 3 29 29 H 1.09001 * 109.46922 * 165.78790 * 8 7 6 30 30 H 1.08996 * 109.47226 * 285.78997 * 8 7 6 31 31 H 1.08998 * 109.47858 * 299.99621 * 9 8 7 32 32 H 1.09005 * 109.47365 * 59.99950 * 9 8 7 33 33 H 0.97006 * 119.99766 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.46794 * 180.02562 * 20 18 7 35 35 H 1.08992 * 109.47327 * 300.02754 * 20 18 7 36 36 H 1.09002 * 109.46587 * 60.02765 * 20 18 7 37 37 H 1.08998 * 109.50475 * 179.12424 * 21 18 7 38 38 H 1.09002 * 109.50406 * 299.24425 * 21 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3447 2.0005 -0.5117 5 6 2.2255 1.7712 1.4427 6 6 2.9029 3.1434 1.4349 7 7 4.1901 3.0513 0.7342 8 6 4.9317 4.3160 0.8269 9 6 4.8902 4.8269 2.2684 10 6 5.6515 6.1241 2.3637 11 1 6.1179 6.5424 1.4840 12 6 5.7527 6.7768 3.5739 13 7 5.1843 6.2677 4.6452 14 14 6.6957 8.3849 3.6919 15 1 7.2356 8.7414 2.3552 16 1 5.7846 9.4598 4.1608 17 1 7.8170 8.2319 4.6534 18 6 4.0047 2.6514 -0.6666 19 1 3.3586 3.3723 -1.1676 20 6 5.3634 2.6104 -1.3689 21 6 3.3602 1.2645 -0.7216 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.2630 1.8433 1.9492 26 1 2.8597 1.0552 1.9655 27 1 2.2620 3.8620 0.9241 28 1 3.0707 3.4714 2.4607 29 1 5.9674 4.1525 0.5290 30 1 4.4759 5.0537 0.1666 31 1 3.8546 4.9904 2.5664 32 1 5.3462 4.0891 2.9287 33 1 5.2558 6.7267 5.4967 34 1 5.2260 2.3141 -2.4088 35 1 5.8224 3.5981 -1.3302 36 1 6.0096 1.8895 -0.8680 37 1 3.2084 0.9747 -1.7613 38 1 4.0122 0.5406 -0.2328 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300891843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:40 Heat of formation + Delta-G solvation = -57.652187 kcal Electronic energy + Delta-G solvation = -16418.068168 eV Core-core repulsion = 13873.998975 eV Total energy + Delta-G solvation = -2544.069193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.41160 -37.29223 -33.72297 -32.19181 -32.05412 -28.92628 -27.11107 -26.29242 -24.58715 -23.21290 -21.14359 -20.23538 -19.27342 -16.60639 -16.31093 -15.54927 -15.21298 -15.01161 -14.60605 -14.20124 -13.77532 -13.39359 -13.18713 -12.74960 -12.23921 -11.97696 -11.77583 -11.59752 -11.51093 -11.21783 -11.03605 -10.88415 -10.69022 -10.56870 -10.44349 -10.17901 -9.89672 -9.49570 -9.25465 -9.00028 -8.34391 -7.66302 -6.00697 -4.02819 3.30797 3.38321 3.42278 3.75068 4.35865 4.51839 4.92297 4.99773 5.16123 5.27875 5.31961 5.33802 5.35627 5.51244 5.57418 5.65420 5.68660 5.78390 5.96818 6.03161 6.10421 6.13980 6.32033 6.34842 6.37741 6.44828 6.59239 6.63671 6.96194 7.24323 7.54033 7.63803 7.81513 7.86495 8.05447 8.43100 9.04115 9.61031 11.10749 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042902 B = 0.005686 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.500833 B = 4923.070653 C = 5438.665363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.088 3.912 4 H 0.053 0.947 5 C -0.136 4.136 6 C 0.054 3.946 7 N -0.535 5.535 8 C 0.062 3.938 9 C 0.019 3.981 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.083 3.917 19 H 0.033 0.967 20 C -0.144 4.144 21 C -0.105 4.105 22 H 0.037 0.963 23 H 0.082 0.918 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.025 0.975 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 -9.528 -10.096 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.031 3.969 4 H 0.072 0.928 5 C -0.174 4.174 6 C -0.074 4.074 7 N -0.260 5.260 8 C -0.064 4.064 9 C -0.018 4.018 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.026 4.026 19 H 0.051 0.949 20 C -0.202 4.202 21 C -0.142 4.142 22 H 0.056 0.944 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.043 0.957 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.756 -10.020 -9.691 15.491 hybrid contribution -0.281 1.808 -0.189 1.840 sum -7.037 -8.212 -9.880 14.648 Atomic orbital electron populations 1.22739 0.81669 1.02287 0.99809 1.87899 1.19161 1.28396 1.95125 1.22264 0.94665 0.83740 0.96271 0.92845 1.22103 1.00548 0.98318 0.96424 1.22134 0.89358 0.94527 1.01384 1.62095 1.18701 1.33704 1.11530 1.22336 0.96786 0.86484 1.00798 1.19267 0.97328 0.95662 0.89521 1.21224 1.33391 1.06658 0.94624 0.92711 1.24991 0.95741 0.97757 0.95825 1.69979 1.44394 1.39258 0.99692 0.86542 0.79755 0.83661 0.78077 1.19759 1.21065 1.20968 1.21539 0.96314 0.94869 0.89898 0.94906 1.21849 0.96560 1.02827 0.98941 1.21675 0.94941 0.97806 0.99827 0.94401 0.89972 0.94107 0.92000 0.90295 0.95696 0.88345 0.91567 0.96355 0.96225 0.95644 0.93050 0.92865 0.91958 0.91738 0.91627 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.42 16 2 O -0.39 -5.29 10.36 -35.23 -0.36 -5.65 16 3 C 0.09 1.22 2.68 -26.60 -0.07 1.15 16 4 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 5 C -0.14 -2.05 5.72 -26.65 -0.15 -2.21 16 6 C 0.05 0.96 4.85 -3.83 -0.02 0.94 16 7 N -0.53 -9.89 4.64 -226.69 -1.05 -10.94 16 8 C 0.06 1.33 4.30 -3.82 -0.02 1.31 16 9 C 0.02 0.50 4.22 -27.88 -0.12 0.38 16 10 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 14 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.08 1.27 2.40 -67.72 -0.16 1.11 16 19 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 20 C -0.14 -2.00 8.78 37.16 0.33 -1.67 16 21 C -0.10 -1.45 5.03 -26.65 -0.13 -1.58 16 22 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.39 7.96 -51.93 -0.41 -0.02 16 25 H 0.06 0.85 7.96 -51.93 -0.41 0.43 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 1.99 5.81 -51.93 -0.30 1.69 16 29 H 0.07 1.40 6.84 -51.93 -0.36 1.04 16 30 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.02 0.53 6.21 -51.93 -0.32 0.21 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 297.13 15.07 4.48 4.48 Total: -1.00 -29.97 297.13 -7.62 -37.59 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -6.74 Total: -3.41 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 0.34 Total: -12.62 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.32 Total: -37.02 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.36 Total: -5.65 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.97 -7.62 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300891843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.058 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds