Wall clock time and date at job start Sun Mar 29 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00048 * 2 1 4 4 H 1.08993 * 109.52388 * 330.12517 * 3 2 1 5 5 C 1.53124 * 109.57570 * 90.28502 * 3 2 1 6 6 C 1.53035 * 109.27796 * 177.58874 * 5 3 2 7 7 N 1.46848 * 109.52299 * 300.81845 * 6 5 3 8 8 C 1.46904 * 110.99785 * 185.83852 * 7 6 5 9 9 C 1.52996 * 109.46832 * 45.79275 * 8 7 6 10 10 C 1.50708 * 109.46933 * 179.97438 * 9 8 7 11 11 H 1.07995 * 120.00065 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99965 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00070 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00029 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47093 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47374 * 119.99397 * 14 12 10 17 17 H 1.48500 * 109.47107 * 239.99924 * 14 12 10 18 18 C 1.46848 * 111.19598 * 61.74565 * 7 6 5 19 19 H 1.09002 * 109.46505 * 58.27071 * 18 7 6 20 20 C 1.53003 * 109.45289 * 178.24362 * 18 7 6 21 21 C 1.53036 * 109.52376 * 298.25362 * 18 7 6 22 22 H 1.09004 * 109.47031 * 59.99457 * 1 2 3 23 23 H 1.08997 * 109.47264 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47033 * 300.00347 * 1 2 3 25 25 H 1.08996 * 109.50044 * 297.53464 * 5 3 2 26 26 H 1.09005 * 109.50178 * 57.64606 * 5 3 2 27 27 H 1.08994 * 109.46449 * 60.83936 * 6 5 3 28 28 H 1.09000 * 109.45876 * 180.81594 * 6 5 3 29 29 H 1.09001 * 109.46922 * 165.78790 * 8 7 6 30 30 H 1.08996 * 109.47226 * 285.78997 * 8 7 6 31 31 H 1.08998 * 109.47858 * 299.99621 * 9 8 7 32 32 H 1.09005 * 109.47365 * 59.99950 * 9 8 7 33 33 H 0.97006 * 119.99766 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.46794 * 180.02562 * 20 18 7 35 35 H 1.08992 * 109.47327 * 300.02754 * 20 18 7 36 36 H 1.09002 * 109.46587 * 60.02765 * 20 18 7 37 37 H 1.08998 * 109.50475 * 179.12424 * 21 18 7 38 38 H 1.09002 * 109.50406 * 299.24425 * 21 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3447 2.0005 -0.5117 5 6 2.2255 1.7712 1.4427 6 6 2.9029 3.1434 1.4349 7 7 4.1901 3.0513 0.7342 8 6 4.9317 4.3160 0.8269 9 6 4.8902 4.8269 2.2684 10 6 5.6515 6.1241 2.3637 11 1 6.1179 6.5424 1.4840 12 6 5.7527 6.7768 3.5739 13 7 5.1843 6.2677 4.6452 14 14 6.6957 8.3849 3.6919 15 1 7.2356 8.7414 2.3552 16 1 5.7846 9.4598 4.1608 17 1 7.8170 8.2319 4.6534 18 6 4.0047 2.6514 -0.6666 19 1 3.3586 3.3723 -1.1676 20 6 5.3634 2.6104 -1.3689 21 6 3.3602 1.2645 -0.7216 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.2630 1.8433 1.9492 26 1 2.8597 1.0552 1.9655 27 1 2.2620 3.8620 0.9241 28 1 3.0707 3.4714 2.4607 29 1 5.9674 4.1525 0.5290 30 1 4.4759 5.0537 0.1666 31 1 3.8546 4.9904 2.5664 32 1 5.3462 4.0891 2.9287 33 1 5.2558 6.7267 5.4967 34 1 5.2260 2.3141 -2.4088 35 1 5.8224 3.5981 -1.3302 36 1 6.0096 1.8895 -0.8680 37 1 3.2084 0.9747 -1.7613 38 1 4.0122 0.5406 -0.2328 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300891843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:40 Heat of formation + Delta-G solvation = -77.378022 kcal Electronic energy + Delta-G solvation = -16418.923545 eV Core-core repulsion = 13873.998975 eV Total energy + Delta-G solvation = -2544.924570 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67481 -38.46740 -35.60142 -33.79140 -33.42775 -30.68288 -28.32200 -27.26530 -26.35344 -24.80863 -22.42566 -21.81368 -20.66690 -18.61091 -17.44210 -16.79401 -16.64520 -16.36412 -16.11902 -15.66398 -15.32524 -14.74670 -14.50079 -14.14749 -13.95901 -13.30803 -13.08377 -12.96150 -12.84579 -12.74053 -12.62695 -12.43035 -12.20670 -11.96193 -11.87444 -11.59621 -11.42193 -11.20128 -11.17341 -10.57843 -10.37342 -9.16393 -8.20655 -6.31729 1.39970 1.40570 1.53761 2.40035 2.76905 3.02458 3.13022 3.78715 3.81529 4.04847 4.11805 4.29986 4.34840 4.44297 4.50562 4.53760 4.56837 4.59853 4.62884 4.83288 4.87432 4.93590 4.95692 5.00340 5.04699 5.07736 5.19468 5.26976 5.41242 5.46330 5.66230 5.79205 6.09241 6.27622 6.33762 6.36510 6.85129 7.37487 8.91593 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042902 B = 0.005686 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.500833 B = 4923.070653 C = 5438.665363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.093 3.907 4 H 0.066 0.934 5 C -0.128 4.128 6 C 0.057 3.943 7 N -0.545 5.545 8 C 0.080 3.920 9 C 0.028 3.972 10 C -0.543 4.543 11 H 0.060 0.940 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.966 3.034 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.080 3.920 19 H 0.037 0.963 20 C -0.141 4.141 21 C -0.099 4.099 22 H 0.051 0.949 23 H 0.100 0.900 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.019 0.981 31 H 0.000 1.000 32 H -0.008 1.008 33 H 0.264 0.736 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.385 -9.538 -11.836 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.035 3.965 4 H 0.084 0.916 5 C -0.166 4.166 6 C -0.071 4.071 7 N -0.270 5.270 8 C -0.047 4.047 9 C -0.009 4.009 10 C -0.581 4.581 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.790 3.210 15 H -0.185 1.185 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.028 4.028 19 H 0.055 0.945 20 C -0.199 4.199 21 C -0.137 4.137 22 H 0.070 0.930 23 H 0.118 0.882 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.019 0.981 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.026 -10.046 -11.449 16.774 hybrid contribution -0.263 1.750 0.368 1.807 sum -7.289 -8.297 -11.080 15.644 Atomic orbital electron populations 1.22977 0.79847 1.03826 1.00602 1.87879 1.21191 1.27909 1.95134 1.22157 0.95110 0.84356 0.94871 0.91635 1.22019 1.00480 0.96078 0.98057 1.22020 0.89413 0.96324 0.99324 1.62066 1.18991 1.31841 1.14148 1.21979 0.97519 0.87801 0.97399 1.19091 0.95475 0.94403 0.91916 1.21650 1.33762 1.07641 0.95087 0.92197 1.25947 0.96623 1.01663 0.95350 1.70114 1.45680 1.41050 1.00361 0.85387 0.78269 0.78765 0.78545 1.18535 1.20358 1.20381 1.21685 0.97580 0.95844 0.87691 0.94463 1.21840 0.95384 1.02122 1.00519 1.21627 0.94555 0.96244 1.01231 0.93031 0.88177 0.93867 0.90678 0.91690 0.95520 0.91854 0.91384 0.96327 0.98134 0.99002 0.92771 0.89845 0.93087 0.92233 0.89132 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.82 113.37 1.23 1.64 16 2 O -0.40 -10.08 10.36 -148.98 -1.54 -11.62 16 3 C 0.09 2.39 2.68 30.68 0.08 2.47 16 4 H 0.07 1.54 7.79 -2.39 -0.02 1.53 16 5 C -0.13 -3.83 5.72 30.65 0.18 -3.66 16 6 C 0.06 2.09 4.85 86.32 0.42 2.51 16 7 N -0.54 -20.28 4.64 -871.11 -4.04 -24.32 16 8 C 0.08 3.47 4.30 86.30 0.37 3.84 16 9 C 0.03 1.53 4.22 29.85 0.13 1.66 16 10 C -0.54 -31.27 9.11 25.60 0.23 -31.03 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 12 C 0.00 0.12 5.46 84.65 0.46 0.58 16 13 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 14 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 C 0.08 2.33 2.40 44.94 0.11 2.44 16 19 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 20 C -0.14 -3.65 8.78 71.98 0.63 -3.01 16 21 C -0.10 -2.52 5.03 30.65 0.15 -2.36 16 22 H 0.05 0.78 8.09 -2.38 -0.02 0.76 16 23 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 0.74 7.96 -2.38 -0.02 0.72 16 25 H 0.07 2.01 7.96 -2.39 -0.02 1.99 16 26 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 2.73 5.81 -2.39 -0.01 2.71 16 29 H 0.07 2.89 6.84 -2.39 -0.02 2.88 16 30 H 0.02 0.79 8.08 -2.39 -0.02 0.78 16 31 H 0.00 0.03 6.21 -2.39 -0.01 0.01 16 32 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 33 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 34 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 1.42 6.55 -2.39 -0.02 1.41 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -64.91 297.13 1.71 -63.20 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.00 Total: 8.04 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 3.99 Total: -24.93 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.76 Total: -81.23 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.54 Total: -11.62 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.91 1.71 -63.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300891843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.175 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds