Wall clock time and date at job start Sun Mar 29 2020 21:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46922 * 2 1 4 4 H 1.09000 * 109.47450 * 305.11450 * 3 2 1 5 5 C 1.50703 * 109.47218 * 185.11223 * 3 2 1 6 6 H 1.08003 * 120.00097 * 239.99856 * 5 3 2 7 7 C 1.37874 * 119.99860 * 59.99628 * 5 3 2 8 8 N 1.31519 * 120.00062 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00044 * 0.28093 * 7 5 3 10 10 H 1.48498 * 109.47276 * 269.72318 * 9 7 5 11 11 H 1.48500 * 109.47088 * 29.72153 * 9 7 5 12 12 H 1.48502 * 109.47191 * 149.72114 * 9 7 5 13 13 N 1.46907 * 109.47527 * 65.11271 * 3 2 1 14 14 C 1.46897 * 111.00079 * 204.15646 * 13 3 2 15 15 H 1.09001 * 109.54478 * 325.30485 * 14 13 3 16 16 C 1.53178 * 109.54626 * 85.48459 * 14 13 3 17 17 C 1.53095 * 109.15776 * 176.75623 * 16 14 13 18 18 O 1.42904 * 109.49132 * 302.52413 * 17 16 14 19 19 C 1.42901 * 114.09693 * 61.10966 * 18 17 16 20 20 C 1.53093 * 109.41485 * 298.84759 * 19 18 17 21 21 H 1.09004 * 109.52427 * 297.69509 * 20 19 18 22 22 C 1.53007 * 109.57236 * 177.54521 * 20 19 18 23 23 H 1.09002 * 109.47531 * 294.94105 * 1 2 3 24 24 H 1.08997 * 109.47029 * 54.94126 * 1 2 3 25 25 H 1.09004 * 109.47188 * 174.94046 * 1 2 3 26 26 H 1.08991 * 109.47236 * 239.99906 * 2 1 3 27 27 H 1.09004 * 109.46742 * 119.99767 * 2 1 3 28 28 H 0.96998 * 119.99937 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00009 * 80.19765 * 13 3 2 30 30 H 1.08997 * 109.52099 * 296.75355 * 16 14 13 31 31 H 1.09007 * 109.52132 * 56.93829 * 16 14 13 32 32 H 1.09004 * 109.48407 * 182.49502 * 17 16 14 33 33 H 1.08996 * 109.41886 * 62.51338 * 17 16 14 34 34 H 1.08993 * 109.48558 * 178.86499 * 19 18 17 35 35 H 1.08997 * 109.48139 * 58.82588 * 19 18 17 36 36 H 1.08997 * 109.46869 * 300.27645 * 22 20 19 37 37 H 1.08991 * 109.47274 * 60.28486 * 22 20 19 38 38 H 1.08999 * 109.46805 * 180.28301 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6037 1.9821 -0.8406 5 6 3.5416 1.4444 -0.1266 6 1 4.1484 1.8885 0.6487 7 6 4.1409 0.8792 -1.2322 8 7 5.4515 0.8813 -1.3429 9 14 3.0913 0.1180 -2.5768 10 1 2.8699 -1.3196 -2.2779 11 1 1.7829 0.8177 -2.6393 12 1 3.7864 0.2508 -3.8824 13 7 1.6536 2.0985 1.2564 14 6 1.5939 3.5570 1.0920 15 1 2.3670 3.8772 0.3934 16 6 0.2174 3.9559 0.5512 17 6 0.1364 5.4820 0.4599 18 8 0.3824 6.0504 1.7478 19 6 1.6737 5.7501 2.2810 20 6 1.8158 4.2349 2.4476 21 1 1.0735 3.8756 3.1604 22 6 3.2189 3.9050 2.9608 23 1 -0.3634 0.4333 0.9318 24 1 -0.3633 0.5903 -0.8412 25 1 -0.3634 -1.0237 -0.0906 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.8731 0.4834 -2.1206 29 1 2.2808 1.8443 2.0048 30 1 0.0754 3.5223 -0.4387 31 1 -0.5582 3.5908 1.2245 32 1 -0.8565 5.7735 0.1176 33 1 0.8846 5.8430 -0.2457 34 1 1.7883 6.2347 3.2506 35 1 2.4422 6.1144 1.5993 36 1 3.9606 4.2665 2.2485 37 1 3.3759 4.3877 3.9253 38 1 3.3199 2.8256 3.0740 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300917475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:51 Heat of formation + Delta-G solvation = -61.142154 kcal Electronic energy + Delta-G solvation = -17069.792866 eV Core-core repulsion = 14525.572336 eV Total energy + Delta-G solvation = -2544.220529 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36020 -36.49000 -34.05346 -32.14308 -31.70116 -29.89439 -26.88129 -26.39279 -23.50645 -22.30817 -21.96179 -19.75522 -19.46471 -17.04861 -15.92655 -15.83759 -15.11078 -14.65627 -14.43456 -13.98837 -13.56053 -13.12586 -12.79845 -12.72152 -12.29146 -11.86096 -11.73118 -11.62535 -11.59033 -11.33038 -10.90339 -10.75119 -10.63614 -10.43478 -10.08996 -9.80818 -9.76294 -9.49911 -9.28380 -9.13858 -8.59442 -7.35528 -6.15040 -4.15743 3.23751 3.34445 3.36568 4.07831 4.34875 4.90148 5.05033 5.15829 5.17417 5.26187 5.48789 5.57356 5.69843 5.79167 5.85849 5.98925 6.02196 6.03635 6.06428 6.19652 6.24901 6.28542 6.43319 6.47261 6.57206 6.69303 6.73654 6.79763 6.98330 7.11115 7.27032 7.38953 7.56297 8.05016 8.38842 8.48743 8.87648 9.48954 10.97776 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.009066 C = 0.008230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.266817 B = 3087.862494 C = 3401.334593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.183 3.817 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.299 1.299 13 N -0.677 5.677 14 C 0.095 3.905 15 H 0.052 0.948 16 C -0.141 4.141 17 C 0.061 3.939 18 O -0.388 6.388 19 C 0.069 3.931 20 C -0.126 4.126 21 H 0.079 0.921 22 C -0.147 4.147 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.263 0.737 29 H 0.335 0.665 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 6.038 4.797 11.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.074 3.926 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.190 1.190 12 H -0.227 1.227 13 N -0.307 5.307 14 C -0.015 4.015 15 H 0.070 0.930 16 C -0.180 4.180 17 C -0.016 4.016 18 O -0.307 6.307 19 C -0.008 4.008 20 C -0.145 4.145 21 H 0.098 0.902 22 C -0.204 4.204 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.211 6.003 4.676 11.948 hybrid contribution 0.877 -0.590 -1.089 1.517 sum -8.335 5.413 3.588 10.566 Atomic orbital electron populations 1.21716 0.97557 0.99068 1.01513 1.21810 0.93842 0.99428 1.00312 1.19608 0.94169 0.90499 0.88315 0.95083 1.21760 0.90580 1.38945 1.07076 0.90908 1.25008 0.94752 0.95324 0.97936 1.69917 1.08898 1.45047 1.29714 0.86827 0.80625 0.79851 0.80765 1.20501 1.18984 1.22652 1.60808 1.56136 1.05118 1.08687 1.21376 0.95642 0.89795 0.94729 0.93007 1.22205 0.98777 0.94811 1.02183 1.22603 1.00955 0.93358 0.84700 1.87854 1.34435 1.74096 1.34300 1.22614 0.84893 0.94668 0.98663 1.21914 0.98337 0.95768 0.98468 0.90232 1.21771 0.95911 1.02362 1.00377 0.92052 0.94196 0.94961 0.93800 0.92493 0.92672 0.84537 0.91207 0.91013 0.89348 0.93472 0.89343 0.93309 0.92322 0.93052 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.74 37.16 0.36 -2.23 16 2 C -0.12 -2.51 5.11 -26.73 -0.14 -2.65 16 3 C 0.18 4.18 1.39 -68.86 -0.10 4.09 16 4 H 0.03 0.75 6.23 -51.93 -0.32 0.43 16 5 C -0.54 -14.68 8.81 -34.44 -0.30 -14.99 16 6 H 0.07 2.12 8.00 -52.48 -0.42 1.70 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 9 Si 0.89 21.88 24.42 -169.99 -4.15 17.73 16 10 H -0.28 -6.72 6.83 56.52 0.39 -6.33 16 11 H -0.26 -6.27 6.52 56.52 0.37 -5.90 16 12 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 13 N -0.68 -13.23 5.61 -100.76 -0.56 -13.79 16 14 C 0.10 1.69 1.83 -67.53 -0.12 1.57 16 15 H 0.05 1.07 7.61 -51.93 -0.39 0.67 16 16 C -0.14 -2.26 5.62 -26.59 -0.15 -2.41 16 17 C 0.06 0.86 6.84 37.21 0.25 1.12 16 18 O -0.39 -5.86 10.77 -35.23 -0.38 -6.24 16 19 C 0.07 0.96 6.13 37.21 0.23 1.18 16 20 C -0.13 -1.90 2.54 -90.48 -0.23 -2.13 16 21 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 22 C -0.15 -2.17 9.01 37.16 0.33 -1.84 16 23 H 0.06 1.08 7.90 -51.93 -0.41 0.67 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.04 1.01 3.24 -51.93 -0.17 0.85 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.34 6.61 6.09 -39.29 -0.24 6.37 16 30 H 0.07 1.17 7.50 -51.93 -0.39 0.78 16 31 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.03 6.35 -51.93 -0.33 0.70 16 LS Contribution 288.46 15.07 4.35 4.35 Total: -1.00 -28.81 288.46 -6.44 -35.24 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.51 Total: 5.27 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 0.04 Total: -16.33 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.21 Total: -40.03 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.38 Total: -6.24 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.15 Total: 17.73 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.81 -6.44 -35.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300917475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.897 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds