Wall clock time and date at job start Sun Mar 29 2020 21:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46922 * 2 1 4 4 H 1.09000 * 109.47450 * 305.11450 * 3 2 1 5 5 C 1.50703 * 109.47218 * 185.11223 * 3 2 1 6 6 H 1.08003 * 120.00097 * 239.99856 * 5 3 2 7 7 C 1.37874 * 119.99860 * 59.99628 * 5 3 2 8 8 N 1.31519 * 120.00062 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00044 * 0.28093 * 7 5 3 10 10 H 1.48498 * 109.47276 * 269.72318 * 9 7 5 11 11 H 1.48500 * 109.47088 * 29.72153 * 9 7 5 12 12 H 1.48502 * 109.47191 * 149.72114 * 9 7 5 13 13 N 1.46907 * 109.47527 * 65.11271 * 3 2 1 14 14 C 1.46897 * 111.00079 * 204.15646 * 13 3 2 15 15 H 1.09001 * 109.54478 * 325.30485 * 14 13 3 16 16 C 1.53178 * 109.54626 * 85.48459 * 14 13 3 17 17 C 1.53095 * 109.15776 * 176.75623 * 16 14 13 18 18 O 1.42904 * 109.49132 * 302.52413 * 17 16 14 19 19 C 1.42901 * 114.09693 * 61.10966 * 18 17 16 20 20 C 1.53093 * 109.41485 * 298.84759 * 19 18 17 21 21 H 1.09004 * 109.52427 * 297.69509 * 20 19 18 22 22 C 1.53007 * 109.57236 * 177.54521 * 20 19 18 23 23 H 1.09002 * 109.47531 * 294.94105 * 1 2 3 24 24 H 1.08997 * 109.47029 * 54.94126 * 1 2 3 25 25 H 1.09004 * 109.47188 * 174.94046 * 1 2 3 26 26 H 1.08991 * 109.47236 * 239.99906 * 2 1 3 27 27 H 1.09004 * 109.46742 * 119.99767 * 2 1 3 28 28 H 0.96998 * 119.99937 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00009 * 80.19765 * 13 3 2 30 30 H 1.08997 * 109.52099 * 296.75355 * 16 14 13 31 31 H 1.09007 * 109.52132 * 56.93829 * 16 14 13 32 32 H 1.09004 * 109.48407 * 182.49502 * 17 16 14 33 33 H 1.08996 * 109.41886 * 62.51338 * 17 16 14 34 34 H 1.08993 * 109.48558 * 178.86499 * 19 18 17 35 35 H 1.08997 * 109.48139 * 58.82588 * 19 18 17 36 36 H 1.08997 * 109.46869 * 300.27645 * 22 20 19 37 37 H 1.08991 * 109.47274 * 60.28486 * 22 20 19 38 38 H 1.08999 * 109.46805 * 180.28301 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6037 1.9821 -0.8406 5 6 3.5416 1.4444 -0.1266 6 1 4.1484 1.8885 0.6487 7 6 4.1409 0.8792 -1.2322 8 7 5.4515 0.8813 -1.3429 9 14 3.0913 0.1180 -2.5768 10 1 2.8699 -1.3196 -2.2779 11 1 1.7829 0.8177 -2.6393 12 1 3.7864 0.2508 -3.8824 13 7 1.6536 2.0985 1.2564 14 6 1.5939 3.5570 1.0920 15 1 2.3670 3.8772 0.3934 16 6 0.2174 3.9559 0.5512 17 6 0.1364 5.4820 0.4599 18 8 0.3824 6.0504 1.7478 19 6 1.6737 5.7501 2.2810 20 6 1.8158 4.2349 2.4476 21 1 1.0735 3.8756 3.1604 22 6 3.2189 3.9050 2.9608 23 1 -0.3634 0.4333 0.9318 24 1 -0.3633 0.5903 -0.8412 25 1 -0.3634 -1.0237 -0.0906 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.8731 0.4834 -2.1206 29 1 2.2808 1.8443 2.0048 30 1 0.0754 3.5223 -0.4387 31 1 -0.5582 3.5908 1.2245 32 1 -0.8565 5.7735 0.1176 33 1 0.8846 5.8430 -0.2457 34 1 1.7883 6.2347 3.2506 35 1 2.4422 6.1144 1.5993 36 1 3.9606 4.2665 2.2485 37 1 3.3759 4.3877 3.9253 38 1 3.3199 2.8256 3.0740 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300917475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:51 Heat of formation + Delta-G solvation = -81.166216 kcal Electronic energy + Delta-G solvation = -17070.661174 eV Core-core repulsion = 14525.572336 eV Total energy + Delta-G solvation = -2545.088838 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64116 -38.07867 -35.55385 -34.09687 -33.09832 -31.37205 -28.67811 -27.66200 -25.05451 -23.89684 -23.24473 -21.53076 -20.79945 -19.08871 -17.28859 -17.13598 -16.84928 -16.07943 -15.77545 -15.47387 -15.17354 -14.68435 -14.51077 -14.25273 -13.83553 -13.37328 -13.28572 -13.05844 -12.96552 -12.89068 -12.48001 -12.35565 -12.11687 -11.92799 -11.63501 -11.40465 -11.28810 -11.24462 -11.02608 -10.72824 -10.43337 -9.07170 -8.34372 -6.38441 1.27361 1.32222 1.42458 2.27819 2.95916 3.01337 3.44353 3.79275 3.93457 3.98033 4.28820 4.32376 4.38302 4.45357 4.52606 4.55049 4.65938 4.70814 4.78210 4.80070 4.92453 4.95712 5.00646 5.10384 5.16692 5.20142 5.27640 5.30828 5.43087 5.45800 5.56968 5.63273 6.10890 6.24405 6.42768 6.65505 6.81040 7.30481 8.81647 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.009066 C = 0.008230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.266817 B = 3087.862494 C = 3401.334593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 C 0.191 3.809 4 H 0.022 0.978 5 C -0.541 4.541 6 H 0.036 0.964 7 C 0.016 3.984 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.248 1.248 12 H -0.302 1.302 13 N -0.665 5.665 14 C 0.091 3.909 15 H 0.015 0.985 16 C -0.135 4.135 17 C 0.063 3.937 18 O -0.393 6.393 19 C 0.070 3.930 20 C -0.118 4.118 21 H 0.087 0.913 22 C -0.142 4.142 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.264 0.736 29 H 0.333 0.667 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.044 0.956 34 H 0.116 0.884 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.001 6.306 5.212 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.156 4.156 3 C 0.081 3.919 4 H 0.040 0.960 5 C -0.580 4.580 6 H 0.055 0.945 7 C -0.182 4.182 8 N -0.586 5.586 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.172 1.172 12 H -0.230 1.230 13 N -0.295 5.295 14 C -0.020 4.020 15 H 0.033 0.967 16 C -0.174 4.174 17 C -0.014 4.014 18 O -0.312 6.312 19 C -0.007 4.007 20 C -0.137 4.137 21 H 0.106 0.894 22 C -0.200 4.200 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.063 0.937 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.678 6.281 5.109 14.210 hybrid contribution 1.701 -0.617 -1.133 2.135 sum -9.977 5.663 3.976 12.141 Atomic orbital electron populations 1.21621 0.94489 1.00740 1.02061 1.21757 0.96559 0.97717 0.99566 1.19443 0.91093 0.91883 0.89465 0.95968 1.22081 0.92847 1.37338 1.05737 0.94536 1.25825 0.95748 0.96189 1.00480 1.70060 1.10828 1.46970 1.30760 0.85871 0.79526 0.79619 0.77522 1.19323 1.17211 1.22960 1.60860 1.55244 1.06279 1.07102 1.21479 0.95914 0.88746 0.95837 0.96661 1.22147 0.97281 0.96337 1.01594 1.22675 1.02449 0.91802 0.84520 1.87856 1.34769 1.74043 1.34546 1.22700 0.84517 0.93578 0.99955 1.21862 0.98399 0.96667 0.96759 0.89449 1.21722 0.95358 1.01478 1.01413 0.91260 0.93959 0.92682 0.95073 0.92775 0.92688 0.84807 0.92062 0.90430 0.86685 0.93731 0.86621 0.93764 0.94419 0.89972 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.74 71.98 0.70 -3.72 16 2 C -0.12 -4.92 5.11 30.59 0.16 -4.77 16 3 C 0.19 8.68 1.39 44.17 0.06 8.74 16 4 H 0.02 1.06 6.23 -2.39 -0.01 1.05 16 5 C -0.54 -29.99 8.81 25.60 0.23 -29.77 16 6 H 0.04 2.23 8.00 -2.91 -0.02 2.21 16 7 C 0.02 0.90 5.45 84.65 0.46 1.36 16 8 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 9 Si 0.95 45.16 24.42 68.60 1.68 46.83 16 10 H -0.27 -12.20 6.83 99.48 0.68 -11.52 16 11 H -0.25 -11.05 6.52 99.48 0.65 -10.40 16 12 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 13 N -0.66 -25.77 5.61 -472.69 -2.65 -28.42 16 14 C 0.09 3.19 1.83 45.04 0.08 3.28 16 15 H 0.02 0.65 7.61 -2.39 -0.02 0.63 16 16 C -0.14 -4.10 5.62 30.69 0.17 -3.93 16 17 C 0.06 1.63 6.84 72.01 0.49 2.13 16 18 O -0.39 -10.86 10.77 -148.98 -1.60 -12.46 16 19 C 0.07 1.79 6.13 72.01 0.44 2.23 16 20 C -0.12 -3.41 2.54 -10.70 -0.03 -3.44 16 21 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 22 C -0.14 -4.16 9.01 71.98 0.65 -3.51 16 23 H 0.07 2.21 7.90 -2.39 -0.02 2.19 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.03 1.38 3.24 -2.39 -0.01 1.37 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.33 13.23 6.09 -89.70 -0.55 12.68 16 30 H 0.06 1.96 7.50 -2.39 -0.02 1.94 16 31 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.58 6.35 -2.39 -0.02 1.56 16 Total: -1.00 -62.69 288.46 1.53 -61.17 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.39 Total: 22.74 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 3.42 Total: -31.41 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -2.35 Total: -86.87 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -1.60 Total: -12.46 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.68 Total: 46.83 kcal Total: -62.69 1.53 -61.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300917475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.999 kcal (2) G-P(sol) polarization free energy of solvation -62.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds