Wall clock time and date at job start Sun Mar 29 2020 21:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46984 * 2 1 4 4 H 1.08993 * 109.47571 * 305.47805 * 3 2 1 5 5 C 1.50707 * 109.47070 * 185.47586 * 3 2 1 6 6 H 1.07996 * 119.99898 * 245.00923 * 5 3 2 7 7 C 1.37879 * 119.99771 * 64.99999 * 5 3 2 8 8 N 1.31513 * 119.99917 * 8.25742 * 7 5 3 9 9 Si 1.86797 * 119.99985 * 188.25634 * 7 5 3 10 10 H 1.48495 * 109.47090 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47133 * 300.00342 * 9 7 5 12 12 H 1.48500 * 109.47297 * 60.00051 * 9 7 5 13 13 N 1.46902 * 109.47057 * 65.48123 * 3 2 1 14 14 C 1.46895 * 110.99988 * 205.41505 * 13 3 2 15 15 H 1.08996 * 109.54152 * 326.02320 * 14 13 3 16 16 C 1.53174 * 109.54518 * 86.20643 * 14 13 3 17 17 C 1.53093 * 109.16070 * 176.84860 * 16 14 13 18 18 O 1.42902 * 109.41716 * 302.38307 * 17 16 14 19 19 C 1.42910 * 114.09168 * 61.16136 * 18 17 16 20 20 C 1.53085 * 109.41642 * 298.84282 * 19 18 17 21 21 H 1.09000 * 109.52725 * 177.51510 * 20 19 18 22 22 C 1.53003 * 109.52445 * 297.70541 * 20 19 18 23 23 H 1.09000 * 109.46448 * 302.70868 * 1 2 3 24 24 H 1.08992 * 109.47257 * 62.71313 * 1 2 3 25 25 H 1.09002 * 109.46854 * 182.71404 * 1 2 3 26 26 H 1.09009 * 109.46710 * 240.00383 * 2 1 3 27 27 H 1.09003 * 109.47087 * 120.00989 * 2 1 3 28 28 H 0.96997 * 119.99968 * 357.52567 * 8 7 5 29 29 H 1.00902 * 110.99843 * 329.37089 * 13 3 2 30 30 H 1.09004 * 109.51912 * 296.74873 * 16 14 13 31 31 H 1.08993 * 109.52476 * 56.87840 * 16 14 13 32 32 H 1.08995 * 109.48607 * 62.37457 * 17 16 14 33 33 H 1.09010 * 109.47881 * 182.39485 * 17 16 14 34 34 H 1.09006 * 109.48096 * 58.82488 * 19 18 17 35 35 H 1.08995 * 109.47825 * 178.85911 * 19 18 17 36 36 H 1.09000 * 109.47313 * 179.69103 * 22 20 19 37 37 H 1.09004 * 109.46492 * 299.68343 * 22 20 19 38 38 H 1.08994 * 109.47369 * 59.68326 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9839 -0.8368 5 6 3.5410 1.4447 -0.1356 6 1 4.1556 1.8134 0.6722 7 6 4.1294 0.9757 -1.2909 8 7 3.3856 0.6792 -2.3342 9 14 5.9832 0.7615 -1.3744 10 1 6.3623 0.2481 -2.7152 11 1 6.6438 2.0708 -1.1412 12 1 6.4173 -0.2043 -0.3332 13 7 1.6613 2.0957 1.2601 14 6 1.5716 3.5522 1.0918 15 1 2.3188 3.8826 0.3703 16 6 0.1736 3.9247 0.5887 17 6 0.0640 5.4486 0.4915 18 8 0.3342 6.0268 1.7701 19 6 1.6445 5.7515 2.2698 20 6 1.8176 4.2398 2.4383 21 1 2.8309 4.0247 2.7774 22 6 0.8117 3.7216 3.4682 23 1 -0.3632 0.5553 0.8647 24 1 -0.3633 0.4711 -0.9132 25 1 -0.3633 -1.0265 0.0487 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 2.4203 0.7562 -2.2791 29 1 0.7960 1.7189 1.6169 30 1 0.0112 3.4844 -0.3951 31 1 -0.5762 3.5483 1.2845 32 1 0.7867 5.8195 -0.2352 33 1 -0.9427 5.7212 0.1746 34 1 2.3880 6.1263 1.5663 35 1 1.7763 6.2422 3.2340 36 1 0.9320 2.6444 3.5836 37 1 0.9876 4.2114 4.4260 38 1 -0.2008 3.9400 3.1290 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300917481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:57 Heat of formation + Delta-G solvation = -66.849470 kcal Electronic energy + Delta-G solvation = -17076.353225 eV Core-core repulsion = 14531.885208 eV Total energy + Delta-G solvation = -2544.468017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54148 -36.56017 -34.05390 -32.01059 -31.39735 -29.67399 -26.53315 -26.01058 -23.53920 -22.79510 -22.52917 -19.86330 -18.66505 -16.71151 -16.25776 -15.66959 -15.14308 -14.78020 -14.04879 -14.01026 -13.70540 -13.32082 -12.68759 -12.54008 -12.34884 -12.07032 -11.68390 -11.48544 -11.24765 -11.03541 -10.75280 -10.66885 -10.53875 -10.41096 -10.15363 -10.06509 -9.90475 -9.66997 -9.20141 -8.64849 -8.33156 -7.26105 -6.29059 -3.99789 3.45131 3.47513 3.65816 4.07042 4.54512 4.95446 5.10654 5.15985 5.25898 5.37548 5.41918 5.53157 5.74293 5.79292 5.82261 5.90817 5.94465 5.95658 6.03016 6.10919 6.14791 6.17917 6.46075 6.50511 6.59046 6.61321 6.70636 6.82623 6.90835 7.16807 7.37647 7.41053 8.05569 8.15418 8.48846 8.70490 8.96050 9.70026 11.05679 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.008587 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.639037 B = 3259.818555 C = 3679.662772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.207 3.793 4 H -0.007 1.007 5 C -0.576 4.576 6 H 0.054 0.946 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.671 5.671 14 C 0.101 3.899 15 H 0.081 0.919 16 C -0.185 4.185 17 C 0.066 3.934 18 O -0.386 6.386 19 C 0.065 3.935 20 C -0.114 4.114 21 H 0.083 0.917 22 C -0.137 4.137 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.268 0.732 29 H 0.317 0.683 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 6.320 6.916 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.099 3.901 4 H 0.011 0.989 5 C -0.615 4.615 6 H 0.073 0.927 7 C -0.188 4.188 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.301 5.301 14 C -0.010 4.010 15 H 0.099 0.901 16 C -0.224 4.224 17 C -0.011 4.011 18 O -0.305 6.305 19 C -0.013 4.013 20 C -0.134 4.134 21 H 0.101 0.899 22 C -0.194 4.194 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.009 5.968 6.239 9.520 hybrid contribution -1.907 0.256 0.298 1.947 sum -5.916 6.225 6.537 10.792 Atomic orbital electron populations 1.21895 0.98913 1.00017 1.00164 1.21846 0.91994 1.00722 1.02134 1.19280 0.96271 0.89218 0.85288 0.98910 1.21958 0.90821 1.44929 1.03746 0.92732 1.25754 1.06776 0.94201 0.92085 1.70818 1.07334 1.47147 1.30036 0.83567 0.74566 0.76464 0.75831 1.21012 1.21658 1.21486 1.60697 1.35914 1.01601 1.31841 1.21447 0.94263 0.90051 0.95287 0.90079 1.22982 1.00382 0.96835 1.02223 1.22480 1.00786 0.92685 0.85161 1.87848 1.32922 1.74403 1.35282 1.22657 0.84310 0.95407 0.98892 1.21752 1.00799 0.94155 0.96658 0.89910 1.21695 0.98930 1.01367 0.97433 0.93979 0.93809 0.93984 0.91091 0.92920 0.92032 0.86476 0.91348 0.91420 0.93333 0.89609 0.93389 0.89329 0.91992 0.93721 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.79 37.16 0.36 -2.44 16 2 C -0.13 -2.90 5.20 -26.73 -0.14 -3.04 16 3 C 0.21 5.00 1.47 -68.86 -0.10 4.90 16 4 H -0.01 -0.17 6.64 -51.93 -0.34 -0.52 16 5 C -0.58 -15.87 8.46 -34.44 -0.29 -16.17 16 6 H 0.05 1.55 7.83 -52.49 -0.41 1.14 16 7 C 0.02 0.43 5.17 -17.82 -0.09 0.34 16 8 N -0.92 -27.02 13.00 55.43 0.72 -26.30 16 9 Si 1.07 25.23 29.91 -169.99 -5.08 20.15 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 13 N -0.67 -13.80 5.46 -100.77 -0.55 -14.35 16 14 C 0.10 1.86 2.06 -67.53 -0.14 1.72 16 15 H 0.08 1.75 7.65 -51.93 -0.40 1.35 16 16 C -0.18 -2.99 5.02 -26.59 -0.13 -3.12 16 17 C 0.07 0.96 6.84 37.21 0.25 1.21 16 18 O -0.39 -5.86 10.19 -35.23 -0.36 -6.22 16 19 C 0.06 0.91 6.25 37.20 0.23 1.15 16 20 C -0.11 -1.81 2.96 -90.48 -0.27 -2.08 16 21 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 22 C -0.14 -1.99 8.47 37.16 0.31 -1.67 16 23 H 0.04 0.71 6.37 -51.93 -0.33 0.37 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.79 6.27 -51.92 -0.33 1.46 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.27 7.85 6.01 -40.82 -0.25 7.61 16 29 H 0.32 6.01 5.44 -39.29 -0.21 5.79 16 30 H 0.07 1.18 7.57 -51.93 -0.39 0.79 16 31 H 0.07 1.05 6.57 -51.93 -0.34 0.71 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.94 7.19 -51.93 -0.37 0.57 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.77 6.14 -51.93 -0.32 0.45 16 LS Contribution 288.52 15.07 4.35 4.35 Total: -1.00 -28.99 288.52 -7.22 -36.20 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.30 Total: 5.36 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 0.00 Total: -19.20 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.17 Total: -40.65 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.36 Total: -6.22 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.99 -7.22 -36.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300917481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.646 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds