Wall clock time and date at job start Sun Mar 29 2020 21:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46984 * 2 1 4 4 H 1.08993 * 109.47571 * 305.47805 * 3 2 1 5 5 C 1.50707 * 109.47070 * 185.47586 * 3 2 1 6 6 H 1.07996 * 119.99898 * 245.00923 * 5 3 2 7 7 C 1.37879 * 119.99771 * 64.99999 * 5 3 2 8 8 N 1.31513 * 119.99917 * 8.25742 * 7 5 3 9 9 Si 1.86797 * 119.99985 * 188.25634 * 7 5 3 10 10 H 1.48495 * 109.47090 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47133 * 300.00342 * 9 7 5 12 12 H 1.48500 * 109.47297 * 60.00051 * 9 7 5 13 13 N 1.46902 * 109.47057 * 65.48123 * 3 2 1 14 14 C 1.46895 * 110.99988 * 205.41505 * 13 3 2 15 15 H 1.08996 * 109.54152 * 326.02320 * 14 13 3 16 16 C 1.53174 * 109.54518 * 86.20643 * 14 13 3 17 17 C 1.53093 * 109.16070 * 176.84860 * 16 14 13 18 18 O 1.42902 * 109.41716 * 302.38307 * 17 16 14 19 19 C 1.42910 * 114.09168 * 61.16136 * 18 17 16 20 20 C 1.53085 * 109.41642 * 298.84282 * 19 18 17 21 21 H 1.09000 * 109.52725 * 177.51510 * 20 19 18 22 22 C 1.53003 * 109.52445 * 297.70541 * 20 19 18 23 23 H 1.09000 * 109.46448 * 302.70868 * 1 2 3 24 24 H 1.08992 * 109.47257 * 62.71313 * 1 2 3 25 25 H 1.09002 * 109.46854 * 182.71404 * 1 2 3 26 26 H 1.09009 * 109.46710 * 240.00383 * 2 1 3 27 27 H 1.09003 * 109.47087 * 120.00989 * 2 1 3 28 28 H 0.96997 * 119.99968 * 357.52567 * 8 7 5 29 29 H 1.00902 * 110.99843 * 329.37089 * 13 3 2 30 30 H 1.09004 * 109.51912 * 296.74873 * 16 14 13 31 31 H 1.08993 * 109.52476 * 56.87840 * 16 14 13 32 32 H 1.08995 * 109.48607 * 62.37457 * 17 16 14 33 33 H 1.09010 * 109.47881 * 182.39485 * 17 16 14 34 34 H 1.09006 * 109.48096 * 58.82488 * 19 18 17 35 35 H 1.08995 * 109.47825 * 178.85911 * 19 18 17 36 36 H 1.09000 * 109.47313 * 179.69103 * 22 20 19 37 37 H 1.09004 * 109.46492 * 299.68343 * 22 20 19 38 38 H 1.08994 * 109.47369 * 59.68326 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9839 -0.8368 5 6 3.5410 1.4447 -0.1356 6 1 4.1556 1.8134 0.6722 7 6 4.1294 0.9757 -1.2909 8 7 3.3856 0.6792 -2.3342 9 14 5.9832 0.7615 -1.3744 10 1 6.3623 0.2481 -2.7152 11 1 6.6438 2.0708 -1.1412 12 1 6.4173 -0.2043 -0.3332 13 7 1.6613 2.0957 1.2601 14 6 1.5716 3.5522 1.0918 15 1 2.3188 3.8826 0.3703 16 6 0.1736 3.9247 0.5887 17 6 0.0640 5.4486 0.4915 18 8 0.3342 6.0268 1.7701 19 6 1.6445 5.7515 2.2698 20 6 1.8176 4.2398 2.4383 21 1 2.8309 4.0247 2.7774 22 6 0.8117 3.7216 3.4682 23 1 -0.3632 0.5553 0.8647 24 1 -0.3633 0.4711 -0.9132 25 1 -0.3633 -1.0265 0.0487 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 2.4203 0.7562 -2.2791 29 1 0.7960 1.7189 1.6169 30 1 0.0112 3.4844 -0.3951 31 1 -0.5762 3.5483 1.2845 32 1 0.7867 5.8195 -0.2352 33 1 -0.9427 5.7212 0.1746 34 1 2.3880 6.1263 1.5663 35 1 1.7763 6.2422 3.2340 36 1 0.9320 2.6444 3.5836 37 1 0.9876 4.2114 4.4260 38 1 -0.2008 3.9400 3.1290 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300917481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:57 Heat of formation + Delta-G solvation = -85.538494 kcal Electronic energy + Delta-G solvation = -17077.163642 eV Core-core repulsion = 14531.885208 eV Total energy + Delta-G solvation = -2545.278434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86300 -38.23900 -35.62956 -33.81303 -32.85274 -31.19785 -27.97473 -27.67424 -25.29562 -24.15959 -24.03150 -21.74961 -20.00854 -18.79040 -17.57405 -16.91069 -16.73392 -16.19147 -15.70495 -15.52415 -15.42141 -14.71127 -14.30161 -14.15806 -13.82927 -13.57005 -13.27200 -12.88599 -12.73625 -12.55999 -12.43497 -12.24893 -12.07251 -11.98635 -11.94264 -11.73869 -11.52903 -11.04625 -10.65368 -10.46966 -10.45823 -9.04901 -8.50770 -6.24783 1.51713 1.58923 1.78410 2.57143 2.91486 3.20611 3.44726 3.78610 3.87766 4.01218 4.19347 4.22182 4.27991 4.35303 4.42495 4.46592 4.56691 4.70221 4.71459 4.77954 4.81693 4.89095 4.94100 5.04964 5.08438 5.14353 5.23270 5.29830 5.38002 5.46474 5.55077 6.04096 6.18316 6.20933 6.53985 6.61970 6.97483 7.52398 8.81521 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.008587 C = 0.007608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.639037 B = 3259.818555 C = 3679.662772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.213 3.787 4 H -0.035 1.035 5 C -0.587 4.587 6 H 0.039 0.961 7 C -0.031 4.031 8 N -0.938 5.938 9 Si 1.109 2.891 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.274 1.274 13 N -0.671 5.671 14 C 0.099 3.901 15 H 0.040 0.960 16 C -0.176 4.176 17 C 0.068 3.932 18 O -0.387 6.387 19 C 0.066 3.934 20 C -0.111 4.111 21 H 0.070 0.930 22 C -0.130 4.130 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.258 0.742 29 H 0.328 0.672 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.112 0.888 34 H 0.045 0.955 35 H 0.116 0.884 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 6.981 8.396 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.105 3.895 4 H -0.018 1.018 5 C -0.626 4.626 6 H 0.058 0.942 7 C -0.229 4.229 8 N -0.576 5.576 9 Si 0.932 3.068 10 H -0.211 1.211 11 H -0.202 1.202 12 H -0.199 1.199 13 N -0.302 5.302 14 C -0.012 4.012 15 H 0.059 0.941 16 C -0.215 4.215 17 C -0.009 4.009 18 O -0.306 6.306 19 C -0.011 4.011 20 C -0.130 4.130 21 H 0.088 0.912 22 C -0.187 4.187 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.130 0.870 34 H 0.063 0.937 35 H 0.134 0.866 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.771 6.645 7.744 11.264 hybrid contribution -1.683 0.080 -0.136 1.691 sum -6.454 6.725 7.608 12.031 Atomic orbital electron populations 1.21770 0.95331 1.01869 1.00861 1.21671 0.95193 0.98922 1.00309 1.19051 0.94423 0.90207 0.85845 1.01797 1.22254 0.92774 1.44347 1.03179 0.94215 1.27032 1.10379 0.93673 0.91859 1.70921 1.06954 1.48908 1.30840 0.83014 0.70314 0.77338 0.76087 1.21082 1.20179 1.19937 1.60603 1.36809 1.02905 1.29870 1.21439 0.94692 0.88827 0.96234 0.94127 1.22859 0.98855 0.98365 1.01433 1.22532 1.02210 0.91105 0.85071 1.87855 1.33193 1.74243 1.35309 1.22733 0.84028 0.94087 1.00243 1.21710 1.00700 0.95334 0.95271 0.91167 1.21633 0.98374 1.00843 0.97852 0.92078 0.94133 0.91677 0.94200 0.93320 0.93120 0.85200 0.92964 0.90100 0.93818 0.87005 0.93679 0.86560 0.92971 0.91589 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.79 71.98 0.70 -4.30 16 2 C -0.12 -5.59 5.20 30.60 0.16 -5.43 16 3 C 0.21 10.57 1.47 44.17 0.06 10.64 16 4 H -0.04 -1.94 6.64 -2.39 -0.02 -1.95 16 5 C -0.59 -33.23 8.46 25.60 0.22 -33.01 16 6 H 0.04 2.31 7.83 -2.91 -0.02 2.29 16 7 C -0.03 -1.80 5.17 84.66 0.44 -1.36 16 8 N -0.94 -56.81 13.00 21.45 0.28 -56.53 16 9 Si 1.11 51.24 29.91 68.60 2.05 53.29 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 N -0.67 -27.72 5.46 -472.71 -2.58 -30.30 16 14 C 0.10 3.66 2.06 45.04 0.09 3.75 16 15 H 0.04 1.82 7.65 -2.39 -0.02 1.80 16 16 C -0.18 -5.53 5.02 30.68 0.15 -5.37 16 17 C 0.07 1.86 6.84 72.01 0.49 2.35 16 18 O -0.39 -10.75 10.19 -148.98 -1.52 -12.27 16 19 C 0.07 1.74 6.25 72.01 0.45 2.19 16 20 C -0.11 -3.38 2.96 -10.70 -0.03 -3.41 16 21 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 22 C -0.13 -3.44 8.47 71.98 0.61 -2.83 16 23 H 0.06 1.92 6.37 -2.39 -0.02 1.91 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.04 2.05 6.27 -2.38 -0.01 2.04 16 27 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.26 15.73 6.01 -92.71 -0.56 15.17 16 29 H 0.33 12.12 5.44 -89.69 -0.49 11.63 16 30 H 0.05 1.81 7.57 -2.39 -0.02 1.79 16 31 H 0.08 2.33 6.57 -2.39 -0.02 2.32 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.05 1.48 7.19 -2.39 -0.02 1.46 16 37 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.06 1.46 6.14 -2.39 -0.01 1.45 16 Total: -1.00 -63.33 288.52 2.33 -61.00 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.75 Total: 21.60 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 3.35 Total: -36.79 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -2.30 Total: -86.83 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -1.52 Total: -12.27 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -63.33 2.33 -61.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300917481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.540 kcal (2) G-P(sol) polarization free energy of solvation -63.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds