Wall clock time and date at job start Sun Mar 29 2020 21:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47545 * 2 1 4 4 H 1.09001 * 108.70545 * 306.75715 * 3 2 1 5 5 C 1.54162 * 108.65047 * 188.56731 * 3 2 1 6 6 N 1.48526 * 111.93627 * 197.89397 * 5 3 2 7 7 C 1.46902 * 110.99764 * 192.46719 * 6 5 3 8 8 C 1.53001 * 109.47217 * 194.17562 * 7 6 5 9 9 C 1.50694 * 109.47168 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99854 * 179.72538 * 11 9 8 14 14 H 1.48504 * 109.47032 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46816 * 120.00323 * 13 11 9 16 16 H 1.48495 * 109.46630 * 240.00111 * 13 11 9 17 17 C 1.44060 * 114.18632 * 318.84881 * 6 5 3 18 18 C 1.54018 * 108.26508 * 93.31225 * 17 6 5 19 19 C 1.46287 * 112.02818 * 280.49747 * 18 17 6 20 20 O 1.39988 * 108.74228 * 64.99889 * 3 2 1 21 21 H 1.08993 * 109.47580 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46768 * 300.00330 * 1 2 3 23 23 H 1.09004 * 109.46976 * 59.99884 * 1 2 3 24 24 H 1.09003 * 109.46768 * 239.99670 * 2 1 3 25 25 H 1.09002 * 109.46670 * 120.00558 * 2 1 3 26 26 H 1.08999 * 108.98873 * 77.25873 * 5 3 2 27 27 H 1.09006 * 108.98576 * 318.52351 * 5 3 2 28 28 H 1.09000 * 109.46932 * 74.17354 * 7 6 5 29 29 H 1.09002 * 109.46978 * 314.17292 * 7 6 5 30 30 H 1.08998 * 109.46837 * 59.99958 * 8 7 6 31 31 H 1.09002 * 109.46926 * 299.99762 * 8 7 6 32 32 H 0.97001 * 119.99646 * 180.02562 * 12 11 9 33 33 H 1.08999 * 109.70412 * 213.00472 * 17 6 5 34 34 H 1.08998 * 109.71005 * 333.61829 * 17 6 5 35 35 H 1.09003 * 108.96824 * 41.15651 * 18 17 6 36 36 H 1.09000 * 108.96784 * 159.93085 * 18 17 6 37 37 H 1.08992 * 109.10743 * 180.13956 * 19 18 17 38 38 H 1.08999 * 109.10846 * 299.18239 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5742 1.9780 -0.8272 5 6 3.5662 1.4257 -0.2176 6 7 4.1982 2.7080 0.1851 7 6 5.5839 2.7860 -0.2964 8 6 6.3086 3.9284 0.4182 9 6 7.7302 4.0080 -0.0754 10 1 8.0819 3.3130 -0.8235 11 6 8.5821 4.9681 0.4283 12 7 8.1541 5.8141 1.3397 13 14 10.3466 5.0619 -0.1779 14 1 10.5786 4.0020 -1.1918 15 1 10.5897 6.3931 -0.7895 16 1 11.2737 4.8656 0.9653 17 6 3.4521 3.8795 -0.1973 18 6 2.5414 4.2771 0.9794 19 6 1.3349 3.4523 1.0425 20 8 1.6619 2.0533 1.2014 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.7721 1.2447 -1.2726 27 1 3.9995 0.6166 0.3706 28 1 5.5853 2.9704 -1.3707 29 1 6.0943 1.8456 -0.0885 30 1 6.3071 3.7439 1.4924 31 1 5.7983 4.8688 0.2102 32 1 8.7533 6.4898 1.6938 33 1 4.1389 4.6954 -0.4225 34 1 2.8438 3.6579 -1.0742 35 1 3.0965 4.1650 1.9107 36 1 2.2497 5.3211 0.8646 37 1 0.7262 3.7745 1.8872 38 1 0.7647 3.5831 0.1228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300918388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:57 Heat of formation + Delta-G solvation = -55.043584 kcal Electronic energy + Delta-G solvation = -16484.317435 eV Core-core repulsion = 13940.361359 eV Total energy + Delta-G solvation = -2543.956076 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.58194 -36.31667 -34.31046 -33.03099 -31.55579 -29.96549 -27.34787 -25.96838 -24.20122 -22.09750 -21.26654 -20.56518 -19.61909 -16.65053 -16.51879 -15.70715 -15.44047 -14.55000 -14.27353 -14.03976 -13.91086 -13.28558 -13.25143 -12.86159 -12.50989 -12.19053 -11.76719 -11.71215 -11.33865 -11.09967 -11.00731 -10.87321 -10.66004 -10.45462 -10.38942 -10.27483 -9.82365 -9.49148 -9.19370 -9.03449 -8.31493 -7.52380 -5.97896 -4.00128 3.32072 3.39439 3.43427 3.92015 4.32345 4.52520 4.93503 5.09236 5.10097 5.12915 5.30026 5.37273 5.39036 5.49841 5.58336 5.69742 5.73772 5.85994 5.91412 5.94835 6.01085 6.12409 6.14362 6.28359 6.32368 6.43039 6.55115 6.70220 7.01405 7.47174 7.57611 7.74600 7.85496 7.98051 8.13149 8.46140 9.07472 9.63377 11.13470 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051249 B = 0.005509 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.221521 B = 5081.627109 C = 5469.289269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.094 3.906 4 H 0.047 0.953 5 C 0.040 3.960 6 N -0.547 5.547 7 C 0.067 3.933 8 C 0.028 3.972 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.063 3.937 18 C -0.153 4.153 19 C 0.069 3.931 20 O -0.359 6.359 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.017 0.983 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.017 0.983 32 H 0.259 0.741 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.749 -7.272 -3.307 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.035 3.965 4 H 0.065 0.935 5 C -0.088 4.088 6 N -0.271 5.271 7 C -0.059 4.059 8 C -0.009 4.009 9 C -0.560 4.560 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.066 4.066 18 C -0.191 4.191 19 C -0.007 4.007 20 O -0.277 6.277 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.697 -7.228 -2.546 16.575 hybrid contribution 1.100 0.322 -1.416 1.822 sum -13.597 -6.905 -3.962 15.756 Atomic orbital electron populations 1.21712 0.95554 1.01311 1.01961 1.21690 0.96299 0.95513 1.02673 1.21840 0.93406 0.93789 0.87508 0.93475 1.23114 0.94255 0.93404 0.98054 1.60649 1.03291 1.00239 1.62963 1.22326 0.85746 1.01575 0.96287 1.19129 0.93617 0.91786 0.96380 1.21240 0.96357 1.15477 1.22950 0.92794 1.24993 0.98546 0.95698 0.95059 1.69988 1.35711 1.18770 1.28726 0.86551 0.85054 0.77808 0.78665 1.19796 1.21066 1.20971 1.21739 0.96249 0.94144 0.94479 1.21221 0.97217 0.98850 1.01805 1.21596 0.96361 0.81830 1.00899 1.87766 1.86644 1.22452 1.30827 0.92897 0.91998 0.93304 0.91125 0.90878 0.94886 0.90794 0.96479 0.92288 0.95685 0.96464 0.93081 0.89679 0.95751 0.89650 0.91342 0.89795 0.94061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.79 37.16 0.36 -1.08 16 2 C -0.12 -1.38 5.48 -26.73 -0.15 -1.53 16 3 C 0.09 1.29 1.98 -26.12 -0.05 1.23 16 4 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 5 C 0.04 0.63 5.18 -2.32 -0.01 0.62 16 6 N -0.55 -10.46 4.15 -234.13 -0.97 -11.43 16 7 C 0.07 1.47 4.79 -3.82 -0.02 1.45 16 8 C 0.03 0.75 4.93 -27.89 -0.14 0.61 16 9 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 13 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.06 1.10 5.13 -4.81 -0.02 1.07 16 18 C -0.15 -2.35 5.65 -29.39 -0.17 -2.51 16 19 C 0.07 0.92 6.21 33.97 0.21 1.13 16 20 O -0.36 -5.44 9.59 -32.89 -0.32 -5.76 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.65 7.79 -51.93 -0.40 0.24 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.50 8.04 -51.93 -0.42 0.08 16 27 H 0.07 1.18 7.98 -51.93 -0.41 0.77 16 28 H 0.02 0.37 8.11 -51.93 -0.42 -0.05 16 29 H 0.06 1.28 8.03 -51.93 -0.42 0.86 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.02 0.48 6.36 -51.93 -0.33 0.15 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.08 1.66 5.83 -51.93 -0.30 1.36 16 34 H 0.02 0.39 6.89 -51.93 -0.36 0.03 16 35 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.48 7.47 -51.93 -0.39 0.10 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -30.68 295.79 -8.22 -38.91 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -6.71 Total: -3.93 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -0.39 Total: -12.70 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.24 Total: -37.78 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.32 Total: -5.76 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.68 -8.22 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300918388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.138 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds