Wall clock time and date at job start Sun Mar 29 2020 21:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47545 * 2 1 4 4 H 1.09001 * 108.70545 * 306.75715 * 3 2 1 5 5 C 1.54162 * 108.65047 * 188.56731 * 3 2 1 6 6 N 1.48526 * 111.93627 * 197.89397 * 5 3 2 7 7 C 1.46902 * 110.99764 * 192.46719 * 6 5 3 8 8 C 1.53001 * 109.47217 * 194.17562 * 7 6 5 9 9 C 1.50694 * 109.47168 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99854 * 179.72538 * 11 9 8 14 14 H 1.48504 * 109.47032 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46816 * 120.00323 * 13 11 9 16 16 H 1.48495 * 109.46630 * 240.00111 * 13 11 9 17 17 C 1.44060 * 114.18632 * 318.84881 * 6 5 3 18 18 C 1.54018 * 108.26508 * 93.31225 * 17 6 5 19 19 C 1.46287 * 112.02818 * 280.49747 * 18 17 6 20 20 O 1.39988 * 108.74228 * 64.99889 * 3 2 1 21 21 H 1.08993 * 109.47580 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46768 * 300.00330 * 1 2 3 23 23 H 1.09004 * 109.46976 * 59.99884 * 1 2 3 24 24 H 1.09003 * 109.46768 * 239.99670 * 2 1 3 25 25 H 1.09002 * 109.46670 * 120.00558 * 2 1 3 26 26 H 1.08999 * 108.98873 * 77.25873 * 5 3 2 27 27 H 1.09006 * 108.98576 * 318.52351 * 5 3 2 28 28 H 1.09000 * 109.46932 * 74.17354 * 7 6 5 29 29 H 1.09002 * 109.46978 * 314.17292 * 7 6 5 30 30 H 1.08998 * 109.46837 * 59.99958 * 8 7 6 31 31 H 1.09002 * 109.46926 * 299.99762 * 8 7 6 32 32 H 0.97001 * 119.99646 * 180.02562 * 12 11 9 33 33 H 1.08999 * 109.70412 * 213.00472 * 17 6 5 34 34 H 1.08998 * 109.71005 * 333.61829 * 17 6 5 35 35 H 1.09003 * 108.96824 * 41.15651 * 18 17 6 36 36 H 1.09000 * 108.96784 * 159.93085 * 18 17 6 37 37 H 1.08992 * 109.10743 * 180.13956 * 19 18 17 38 38 H 1.08999 * 109.10846 * 299.18239 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5742 1.9780 -0.8272 5 6 3.5662 1.4257 -0.2176 6 7 4.1982 2.7080 0.1851 7 6 5.5839 2.7860 -0.2964 8 6 6.3086 3.9284 0.4182 9 6 7.7302 4.0080 -0.0754 10 1 8.0819 3.3130 -0.8235 11 6 8.5821 4.9681 0.4283 12 7 8.1541 5.8141 1.3397 13 14 10.3466 5.0619 -0.1779 14 1 10.5786 4.0020 -1.1918 15 1 10.5897 6.3931 -0.7895 16 1 11.2737 4.8656 0.9653 17 6 3.4521 3.8795 -0.1973 18 6 2.5414 4.2771 0.9794 19 6 1.3349 3.4523 1.0425 20 8 1.6619 2.0533 1.2014 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.7721 1.2447 -1.2726 27 1 3.9995 0.6166 0.3706 28 1 5.5853 2.9704 -1.3707 29 1 6.0943 1.8456 -0.0885 30 1 6.3071 3.7439 1.4924 31 1 5.7983 4.8688 0.2102 32 1 8.7533 6.4898 1.6938 33 1 4.1389 4.6954 -0.4225 34 1 2.8438 3.6579 -1.0742 35 1 3.0965 4.1650 1.9107 36 1 2.2497 5.3211 0.8646 37 1 0.7262 3.7745 1.8872 38 1 0.7647 3.5831 0.1228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300918388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:57 Heat of formation + Delta-G solvation = -74.777159 kcal Electronic energy + Delta-G solvation = -16485.173147 eV Core-core repulsion = 13940.361359 eV Total energy + Delta-G solvation = -2544.811788 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79269 -37.78845 -35.35212 -35.12573 -32.81444 -31.69273 -28.76750 -27.32391 -25.98698 -23.33491 -22.59136 -21.92007 -21.12765 -18.63675 -17.76279 -17.07946 -16.75392 -16.43057 -15.78508 -15.41138 -15.03254 -14.56258 -14.34282 -14.29785 -14.15255 -13.76909 -13.28165 -12.95346 -12.78893 -12.69046 -12.51198 -12.35358 -11.94033 -11.90539 -11.73995 -11.55636 -11.40566 -11.27051 -11.25322 -10.55051 -10.38857 -9.02406 -8.20805 -6.32452 1.39384 1.40235 1.53455 2.39356 2.84520 3.04584 3.12429 3.85944 3.96304 4.01114 4.10170 4.18528 4.34920 4.40934 4.45229 4.51754 4.53939 4.63440 4.66606 4.81963 4.89927 4.92299 5.04650 5.07473 5.14015 5.15088 5.25699 5.37328 5.44322 5.47758 5.67917 5.77199 6.13051 6.30932 6.43571 6.50793 6.84733 7.36722 8.91565 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051249 B = 0.005509 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.221521 B = 5081.627109 C = 5469.289269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.094 3.906 4 H 0.059 0.941 5 C 0.037 3.963 6 N -0.563 5.563 7 C 0.084 3.916 8 C 0.038 3.962 9 C -0.545 4.545 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.931 5.931 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.278 1.278 17 C 0.062 3.938 18 C -0.146 4.146 19 C 0.067 3.933 20 O -0.377 6.377 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.020 0.980 29 H 0.058 0.942 30 H -0.013 1.013 31 H -0.003 1.003 32 H 0.264 0.736 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.480 -8.104 -4.605 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C 0.035 3.965 4 H 0.077 0.923 5 C -0.091 4.091 6 N -0.288 5.288 7 C -0.043 4.043 8 C 0.001 3.999 9 C -0.584 4.584 10 H 0.078 0.922 11 C -0.196 4.196 12 N -0.571 5.571 13 Si 0.792 3.208 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.204 1.204 17 C -0.067 4.067 18 C -0.184 4.184 19 C -0.008 4.008 20 O -0.296 6.296 21 H 0.085 0.915 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.104 0.896 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.006 0.994 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.449 -8.072 -3.849 17.851 hybrid contribution 1.299 0.599 -0.983 1.736 sum -14.150 -7.473 -4.832 16.716 Atomic orbital electron populations 1.21677 0.94229 1.02296 1.01911 1.21689 0.97383 0.93711 1.03050 1.21934 0.91578 0.95502 0.87471 0.92273 1.23253 0.95949 0.91255 0.98600 1.60575 1.02373 1.02260 1.63642 1.21945 0.87408 0.99323 0.95662 1.18937 0.93742 0.92763 0.94450 1.21651 0.97524 1.15877 1.23317 0.92241 1.25972 1.03543 0.95076 0.95013 1.70125 1.37636 1.19450 1.29913 0.85366 0.78800 0.78293 0.78367 1.18566 1.20200 1.20364 1.21750 0.96043 0.92585 0.96289 1.21183 0.97469 1.00679 0.99096 1.21705 0.95422 0.80658 1.03036 1.87763 1.86589 1.23330 1.31873 0.91451 0.92951 0.92414 0.89559 0.91740 0.93672 0.91331 0.96154 0.92366 0.99416 0.98508 0.92745 0.92644 0.93494 0.93005 0.89463 0.87868 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.79 71.98 0.70 -1.69 16 2 C -0.12 -2.40 5.48 30.60 0.17 -2.24 16 3 C 0.09 2.39 1.98 30.99 0.06 2.45 16 4 H 0.06 1.36 6.56 -2.39 -0.02 1.35 16 5 C 0.04 1.12 5.18 86.38 0.45 1.57 16 6 N -0.56 -21.72 4.15 -894.65 -3.72 -25.44 16 7 C 0.08 3.74 4.79 86.30 0.41 4.15 16 8 C 0.04 2.13 4.93 29.85 0.15 2.28 16 9 C -0.55 -31.90 9.11 25.60 0.23 -31.66 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.00 0.11 5.46 84.66 0.46 0.58 16 12 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 13 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 14 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 C 0.06 2.16 5.13 87.18 0.45 2.61 16 18 C -0.15 -4.44 5.65 28.87 0.16 -4.28 16 19 C 0.07 1.65 6.21 69.91 0.43 2.09 16 20 O -0.38 -10.85 9.59 -140.62 -1.35 -12.19 16 21 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.05 0.98 7.79 -2.39 -0.02 0.96 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.28 8.04 -2.39 -0.02 1.26 16 27 H 0.07 2.15 7.98 -2.38 -0.02 2.13 16 28 H 0.02 0.88 8.11 -2.39 -0.02 0.86 16 29 H 0.06 2.56 8.03 -2.39 -0.02 2.54 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.00 -0.19 6.36 -2.39 -0.02 -0.21 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.06 2.25 5.83 -2.39 -0.01 2.23 16 34 H 0.05 1.41 6.89 -2.39 -0.02 1.39 16 35 H 0.05 1.91 8.11 -2.39 -0.02 1.89 16 36 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.07 1.32 7.47 -2.39 -0.02 1.30 16 Total: -1.00 -67.07 295.79 1.93 -65.14 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.00 Total: 7.25 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 3.68 Total: -24.15 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.43 Total: -82.95 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.35 Total: -12.19 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.07 1.93 -65.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300918388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.636 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds