Wall clock time and date at job start Sun Mar 29 2020 21:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09003 * 109.83437 * 55.00570 * 3 2 1 5 5 C 1.51050 * 109.83845 * 175.91012 * 3 2 1 6 6 N 1.47306 * 111.60910 * 213.48111 * 5 3 2 7 7 C 1.46898 * 110.94502 * 84.97270 * 6 5 3 8 8 C 1.53004 * 109.47269 * 166.77563 * 7 6 5 9 9 C 1.50698 * 109.47518 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99720 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99999 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00072 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99676 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47421 * 60.00172 * 13 11 9 15 15 H 1.48503 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47022 * 299.99616 * 13 11 9 17 17 C 1.48024 * 113.49806 * 319.18292 * 6 5 3 18 18 C 1.50979 * 113.13163 * 318.12568 * 17 6 5 19 19 C 1.54714 * 109.07883 * 92.04644 * 18 17 6 20 20 O 1.36617 * 110.78675 * 286.65208 * 19 18 17 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 24 24 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 25 25 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 26 26 H 1.09002 * 109.05646 * 334.07138 * 5 3 2 27 27 H 1.08996 * 109.06185 * 92.99607 * 5 3 2 28 28 H 1.08991 * 109.47553 * 286.77628 * 7 6 5 29 29 H 1.09004 * 109.47051 * 46.78014 * 7 6 5 30 30 H 1.09001 * 109.47401 * 300.00711 * 8 7 6 31 31 H 1.09004 * 109.46716 * 60.00246 * 8 7 6 32 32 H 0.97000 * 119.99813 * 180.02562 * 12 11 9 33 33 H 1.09002 * 108.75175 * 197.17869 * 17 6 5 34 34 H 1.09000 * 108.75350 * 79.06955 * 17 6 5 35 35 H 1.08995 * 109.53948 * 332.16262 * 18 17 6 36 36 H 1.09008 * 109.53808 * 211.92044 * 18 17 6 37 37 H 1.08993 * 109.21481 * 166.31970 * 19 18 17 38 38 H 1.09001 * 109.17907 * 46.96606 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6088 1.9872 0.8400 5 6 3.5470 1.4535 0.1013 6 7 4.0309 2.6174 0.8637 7 6 4.0177 2.3424 2.3066 8 6 4.8204 3.4198 3.0386 9 6 4.8074 3.1374 4.5188 10 1 4.2798 2.2754 4.8994 11 6 5.4692 3.9795 5.3872 12 7 6.1112 5.0295 4.9237 13 14 5.4536 3.6289 7.2219 14 1 6.0635 2.2993 7.4770 15 1 6.2316 4.6755 7.9324 16 1 4.0528 3.6339 7.7149 17 6 3.3030 3.8689 0.5555 18 6 3.0284 4.0478 -0.9182 19 6 1.6403 3.4505 -1.2501 20 8 1.6830 2.0852 -1.2318 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.8770 0.5406 0.5970 27 1 3.9710 1.4855 -0.9022 28 1 2.9895 2.3470 2.6680 29 1 4.4645 1.3660 2.4945 30 1 5.8488 3.4153 2.6772 31 1 4.3737 4.3962 2.8507 32 1 6.5771 5.6217 5.5346 33 1 3.8950 4.7141 0.9068 34 1 2.3535 3.8629 1.0907 35 1 3.7948 3.5325 -1.4971 36 1 3.0365 5.1097 -1.1643 37 1 1.3327 3.7865 -2.2403 38 1 0.9159 3.7967 -0.5128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300918389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:59 Heat of formation + Delta-G solvation = -57.270207 kcal Electronic energy + Delta-G solvation = -16587.839894 eV Core-core repulsion = 14043.787264 eV Total energy + Delta-G solvation = -2544.052629 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.00302 -36.28897 -34.39256 -33.10587 -31.41408 -29.98609 -27.20917 -25.95037 -24.31139 -22.44785 -21.19282 -20.94365 -19.34420 -16.73117 -16.41844 -16.02526 -15.73012 -14.70889 -14.33051 -14.04628 -13.83021 -13.56596 -13.22606 -12.79841 -12.22554 -12.12321 -11.67755 -11.59252 -11.48930 -11.25937 -11.11382 -10.93085 -10.80057 -10.66956 -10.47963 -10.22255 -9.82161 -9.45528 -9.34858 -9.10198 -8.33059 -7.57240 -5.99308 -4.01960 3.33108 3.37558 3.39750 3.77012 4.33163 4.51784 4.80980 4.93493 5.07291 5.12444 5.25519 5.35714 5.37458 5.47254 5.54854 5.67154 5.70395 5.81218 5.90149 5.93041 6.01080 6.08509 6.23196 6.24366 6.30557 6.34518 6.51210 6.51988 6.97081 7.46998 7.55620 7.71943 7.80870 7.90635 8.08672 8.43720 9.05187 9.61611 11.12059 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.006155 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.978975 B = 4548.229529 C = 5051.201306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.066 3.934 4 H 0.061 0.939 5 C 0.030 3.970 6 N -0.544 5.544 7 C 0.065 3.935 8 C 0.028 3.972 9 C -0.523 4.523 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.057 3.943 18 C -0.165 4.165 19 C 0.075 3.925 20 O -0.382 6.382 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.015 0.985 32 H 0.261 0.739 33 H 0.082 0.918 34 H 0.027 0.973 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 -5.924 -11.430 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.008 3.992 4 H 0.079 0.921 5 C -0.098 4.098 6 N -0.268 5.268 7 C -0.062 4.062 8 C -0.009 4.009 9 C -0.562 4.562 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 C -0.070 4.070 18 C -0.203 4.203 19 C -0.003 4.003 20 O -0.300 6.300 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.045 0.955 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.766 -5.788 -11.653 15.689 hybrid contribution -0.692 0.067 1.616 1.759 sum -9.457 -5.720 -10.038 14.931 Atomic orbital electron populations 1.21722 0.95576 1.01325 1.02044 1.21562 0.96457 0.94491 1.02721 1.22672 0.96311 0.93835 0.86405 0.92095 1.22613 0.92563 0.94598 1.00063 1.62127 1.54690 1.01555 1.08477 1.22394 0.98486 1.01228 0.84074 1.19081 0.95565 0.92754 0.93509 1.21161 1.32649 1.10344 0.92060 0.92891 1.24989 0.95363 0.95109 0.98794 1.69963 1.33882 1.14488 1.34905 0.86662 0.78039 0.77955 0.85353 1.20206 1.21246 1.20330 1.21872 0.96767 0.93782 0.94623 1.22418 0.98721 1.01866 0.97331 1.21850 0.95406 0.81828 1.01249 1.86356 1.89439 1.19441 1.34785 0.92861 0.93072 0.92186 0.90503 0.91009 0.90600 0.90416 0.96475 0.92062 0.95732 0.96633 0.92940 0.89966 0.95509 0.90123 0.90604 0.89279 0.94917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.82 37.16 0.36 -1.23 16 2 C -0.11 -1.33 5.49 -26.73 -0.15 -1.48 16 3 C 0.07 0.92 2.22 -27.71 -0.06 0.86 16 4 H 0.06 0.96 6.39 -51.93 -0.33 0.62 16 5 C 0.03 0.46 4.84 -4.58 -0.02 0.44 16 6 N -0.54 -10.16 4.75 -235.80 -1.12 -11.28 16 7 C 0.06 1.39 4.75 -3.82 -0.02 1.37 16 8 C 0.03 0.75 4.90 -27.88 -0.14 0.61 16 9 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 10 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 13 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.06 0.99 4.44 -4.22 -0.02 0.97 16 18 C -0.17 -2.29 5.70 -26.84 -0.15 -2.44 16 19 C 0.07 0.95 6.43 38.06 0.24 1.19 16 20 O -0.38 -5.35 9.22 -21.74 -0.20 -5.55 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 24 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.12 7.09 -51.93 -0.37 0.75 16 27 H 0.08 1.18 7.25 -51.93 -0.38 0.81 16 28 H 0.02 0.36 7.68 -51.93 -0.40 -0.03 16 29 H 0.06 1.29 7.70 -51.93 -0.40 0.89 16 30 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.43 6.81 -51.93 -0.35 0.08 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.08 1.58 7.04 -51.93 -0.37 1.21 16 34 H 0.03 0.47 6.31 -51.93 -0.33 0.15 16 35 H 0.08 1.17 7.24 -51.93 -0.38 0.79 16 36 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.42 7.72 -51.93 -0.40 0.02 16 LS Contribution 293.29 15.07 4.42 4.42 Total: -1.00 -30.18 293.29 -8.15 -38.32 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.60 Total: -2.95 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.36 Total: -13.37 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.38 Total: -37.61 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.20 Total: -5.55 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.18 -8.15 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300918389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.949 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds