Wall clock time and date at job start Sun Mar 29 2020 21:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09003 * 109.83437 * 55.00570 * 3 2 1 5 5 C 1.51050 * 109.83845 * 175.91012 * 3 2 1 6 6 N 1.47306 * 111.60910 * 213.48111 * 5 3 2 7 7 C 1.46898 * 110.94502 * 84.97270 * 6 5 3 8 8 C 1.53004 * 109.47269 * 166.77563 * 7 6 5 9 9 C 1.50698 * 109.47518 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99720 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99999 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00072 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99676 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47421 * 60.00172 * 13 11 9 15 15 H 1.48503 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47022 * 299.99616 * 13 11 9 17 17 C 1.48024 * 113.49806 * 319.18292 * 6 5 3 18 18 C 1.50979 * 113.13163 * 318.12568 * 17 6 5 19 19 C 1.54714 * 109.07883 * 92.04644 * 18 17 6 20 20 O 1.36617 * 110.78675 * 286.65208 * 19 18 17 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 24 24 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 25 25 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 26 26 H 1.09002 * 109.05646 * 334.07138 * 5 3 2 27 27 H 1.08996 * 109.06185 * 92.99607 * 5 3 2 28 28 H 1.08991 * 109.47553 * 286.77628 * 7 6 5 29 29 H 1.09004 * 109.47051 * 46.78014 * 7 6 5 30 30 H 1.09001 * 109.47401 * 300.00711 * 8 7 6 31 31 H 1.09004 * 109.46716 * 60.00246 * 8 7 6 32 32 H 0.97000 * 119.99813 * 180.02562 * 12 11 9 33 33 H 1.09002 * 108.75175 * 197.17869 * 17 6 5 34 34 H 1.09000 * 108.75350 * 79.06955 * 17 6 5 35 35 H 1.08995 * 109.53948 * 332.16262 * 18 17 6 36 36 H 1.09008 * 109.53808 * 211.92044 * 18 17 6 37 37 H 1.08993 * 109.21481 * 166.31970 * 19 18 17 38 38 H 1.09001 * 109.17907 * 46.96606 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6088 1.9872 0.8400 5 6 3.5470 1.4535 0.1013 6 7 4.0309 2.6174 0.8637 7 6 4.0177 2.3424 2.3066 8 6 4.8204 3.4198 3.0386 9 6 4.8074 3.1374 4.5188 10 1 4.2798 2.2754 4.8994 11 6 5.4692 3.9795 5.3872 12 7 6.1112 5.0295 4.9237 13 14 5.4536 3.6289 7.2219 14 1 6.0635 2.2993 7.4770 15 1 6.2316 4.6755 7.9324 16 1 4.0528 3.6339 7.7149 17 6 3.3030 3.8689 0.5555 18 6 3.0284 4.0478 -0.9182 19 6 1.6403 3.4505 -1.2501 20 8 1.6830 2.0852 -1.2318 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.8770 0.5406 0.5970 27 1 3.9710 1.4855 -0.9022 28 1 2.9895 2.3470 2.6680 29 1 4.4645 1.3660 2.4945 30 1 5.8488 3.4153 2.6772 31 1 4.3737 4.3962 2.8507 32 1 6.5771 5.6217 5.5346 33 1 3.8950 4.7141 0.9068 34 1 2.3535 3.8629 1.0907 35 1 3.7948 3.5325 -1.4971 36 1 3.0365 5.1097 -1.1643 37 1 1.3327 3.7865 -2.2403 38 1 0.9159 3.7967 -0.5128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300918389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:58 Heat of formation + Delta-G solvation = -76.679834 kcal Electronic energy + Delta-G solvation = -16588.681558 eV Core-core repulsion = 14043.787264 eV Total energy + Delta-G solvation = -2544.894294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.19700 -37.74304 -35.42435 -35.17765 -32.80041 -31.61274 -28.70788 -27.20349 -26.10261 -23.70594 -22.65139 -22.23880 -20.80750 -18.61993 -17.73635 -17.27186 -17.00674 -16.54255 -15.88244 -15.56384 -15.01083 -14.77525 -14.44623 -14.18562 -13.96482 -13.49761 -13.39723 -13.00724 -12.79221 -12.63941 -12.51051 -12.40271 -12.31264 -11.97958 -11.76908 -11.74108 -11.38812 -11.27704 -11.19913 -10.56965 -10.54783 -9.05720 -8.21349 -6.33364 1.39118 1.42546 1.50504 2.38980 2.72400 2.96388 3.11887 3.72259 3.78310 3.97141 4.02201 4.16862 4.31004 4.36118 4.43243 4.48711 4.55391 4.60339 4.67090 4.71339 4.86212 4.95662 5.02437 5.06047 5.09281 5.09807 5.21929 5.25214 5.40832 5.43560 5.62572 5.76193 6.05159 6.26463 6.29998 6.62039 6.83632 7.35964 8.90739 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.006155 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.978975 B = 4548.229529 C = 5051.201306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.071 3.929 4 H 0.042 0.958 5 C 0.032 3.968 6 N -0.559 5.559 7 C 0.083 3.917 8 C 0.037 3.963 9 C -0.547 4.547 10 H 0.061 0.939 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.967 3.033 14 H -0.265 1.265 15 H -0.282 1.282 16 H -0.267 1.267 17 C 0.060 3.940 18 C -0.157 4.157 19 C 0.074 3.926 20 O -0.384 6.384 21 H 0.070 0.930 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.017 0.983 29 H 0.067 0.933 30 H -0.009 1.009 31 H -0.010 1.010 32 H 0.264 0.736 33 H 0.052 0.948 34 H 0.020 0.980 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.407 -7.227 -11.620 17.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C 0.012 3.988 4 H 0.060 0.940 5 C -0.095 4.095 6 N -0.283 5.283 7 C -0.044 4.044 8 C 0.000 4.000 9 C -0.585 4.585 10 H 0.079 0.921 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.791 3.209 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.192 1.192 17 C -0.068 4.068 18 C -0.195 4.195 19 C -0.004 4.004 20 O -0.302 6.302 21 H 0.089 0.911 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.009 0.991 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.137 0.863 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.871 -7.105 -11.863 16.990 hybrid contribution -0.327 0.514 1.618 1.729 sum -10.198 -6.590 -10.245 15.887 Atomic orbital electron populations 1.21693 0.94746 1.02361 1.01536 1.21578 0.97163 0.92721 1.03520 1.22607 0.94992 0.95204 0.85963 0.93994 1.22664 0.93827 0.93318 0.99727 1.61993 1.56089 1.03278 1.06957 1.22012 0.97372 0.99386 0.85634 1.18905 0.94154 0.93305 0.93686 1.21600 1.32917 1.10772 0.93244 0.92095 1.25980 0.94668 0.94681 1.04306 1.70109 1.34641 1.15551 1.36897 0.85476 0.78582 0.78199 0.78639 1.18987 1.20756 1.19172 1.21858 0.95506 0.92256 0.97138 1.22383 0.99549 1.03271 0.94279 1.21982 0.94295 0.81225 1.02868 1.86371 1.89271 1.20055 1.34525 0.91073 0.93727 0.92537 0.89934 0.89959 0.89769 0.89776 0.96508 0.91502 0.99069 0.99163 0.92725 0.92976 0.96217 0.90459 0.88746 0.86299 0.95074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.82 71.98 0.71 -2.10 16 2 C -0.11 -2.37 5.49 30.60 0.17 -2.20 16 3 C 0.07 1.88 2.22 29.96 0.07 1.95 16 4 H 0.04 1.29 6.39 -2.39 -0.02 1.28 16 5 C 0.03 0.96 4.84 85.59 0.41 1.38 16 6 N -0.56 -21.07 4.75 -899.93 -4.28 -25.35 16 7 C 0.08 3.63 4.75 86.30 0.41 4.04 16 8 C 0.04 2.03 4.90 29.85 0.15 2.18 16 9 C -0.55 -31.75 9.11 25.60 0.23 -31.51 16 10 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 11 C 0.00 0.10 5.46 84.66 0.46 0.56 16 12 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 13 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 17 C 0.06 2.12 4.44 85.43 0.38 2.50 16 18 C -0.16 -4.18 5.70 30.52 0.17 -4.01 16 19 C 0.07 1.73 6.43 72.57 0.47 2.20 16 20 O -0.38 -9.95 9.22 -100.71 -0.93 -10.88 16 21 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 1.12 7.87 -2.39 -0.02 1.10 16 24 H 0.08 1.66 8.01 -2.39 -0.02 1.64 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.08 2.36 7.09 -2.39 -0.02 2.34 16 27 H 0.08 2.43 7.25 -2.39 -0.02 2.41 16 28 H 0.02 0.73 7.68 -2.39 -0.02 0.71 16 29 H 0.07 2.81 7.70 -2.38 -0.02 2.79 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H -0.01 -0.59 6.81 -2.38 -0.02 -0.61 16 32 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.05 2.12 7.04 -2.39 -0.02 2.10 16 34 H 0.02 0.72 6.31 -2.39 -0.02 0.70 16 35 H 0.08 2.14 7.24 -2.39 -0.02 2.12 16 36 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.03 0.75 7.72 -2.39 -0.02 0.73 16 Total: -1.00 -65.45 293.29 1.73 -63.72 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.00 Total: 8.40 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 3.63 Total: -25.02 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.99 Total: -82.82 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.93 Total: -10.88 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.45 1.73 -63.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300918389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.961 kcal (2) G-P(sol) polarization free energy of solvation -65.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds