Wall clock time and date at job start Sun Mar 29 2020 21:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47241 * 2 1 4 4 O 1.42902 * 109.46731 * 240.00041 * 2 1 3 5 5 C 1.52996 * 109.46892 * 120.00216 * 2 1 3 6 6 N 1.46903 * 109.47386 * 53.90509 * 5 2 1 7 7 C 1.46839 * 111.00190 * 77.35276 * 6 5 2 8 8 C 1.53041 * 109.52259 * 185.84146 * 7 6 5 9 9 C 1.53113 * 109.31164 * 300.80249 * 8 7 6 10 10 C 1.53196 * 109.11692 * 57.63516 * 9 8 7 11 11 H 1.08993 * 109.49816 * 62.32164 * 10 9 8 12 12 C 1.50706 * 109.52611 * 182.40688 * 10 9 8 13 13 H 1.07993 * 120.00329 * 119.83835 * 12 10 9 14 14 C 1.37883 * 119.99828 * 299.84405 * 12 10 9 15 15 N 1.31515 * 119.99797 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00174 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46819 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47148 * 119.99794 * 16 14 12 19 19 H 1.48499 * 109.47094 * 239.99684 * 16 14 12 20 20 C 1.46847 * 111.00210 * 201.56659 * 6 5 2 21 21 H 1.09000 * 109.46709 * 300.00212 * 1 2 3 22 22 H 1.09003 * 109.47099 * 59.99444 * 1 2 3 23 23 H 1.08990 * 109.47298 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47305 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47784 * 299.99885 * 3 2 1 26 26 H 1.09000 * 109.47442 * 60.00236 * 3 2 1 27 27 H 0.96706 * 113.99833 * 180.02562 * 4 2 1 28 28 H 1.08997 * 109.47058 * 293.90034 * 5 2 1 29 29 H 1.09006 * 109.47165 * 173.90110 * 5 2 1 30 30 H 1.08999 * 109.46748 * 65.82220 * 7 6 5 31 31 H 1.09005 * 109.45245 * 305.84643 * 7 6 5 32 32 H 1.09001 * 109.50051 * 60.76263 * 8 7 6 33 33 H 1.09004 * 109.50643 * 180.83435 * 8 7 6 34 34 H 1.09002 * 109.52335 * 177.57923 * 9 8 7 35 35 H 1.09008 * 109.52202 * 297.76739 * 9 8 7 36 36 H 0.96997 * 120.00093 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.45712 * 294.17622 * 20 6 5 38 38 H 1.09004 * 109.46418 * 54.13798 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 1.4339 -2.0573 1.3250 7 6 2.0859 -2.9847 0.3917 8 6 1.3383 -4.3200 0.3915 9 6 1.3444 -4.9039 1.8070 10 6 0.7036 -3.8973 2.7677 11 1 -0.3350 -3.7317 2.4816 12 6 0.7581 -4.4377 4.1735 13 1 1.2862 -3.8924 4.9416 14 6 0.1337 -5.6285 4.4790 15 7 -0.5099 -6.2924 3.5437 16 14 0.2005 -6.2980 6.2216 17 1 0.9799 -5.3693 7.0791 18 1 -1.1790 -6.4260 6.7559 19 1 0.8544 -7.6313 6.2148 20 6 1.4696 -2.5743 2.6990 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 2.9703 -0.7122 -1.2328 28 1 1.7685 -0.1483 2.1358 29 1 3.1246 -0.8168 1.1963 30 1 3.1182 -3.1464 0.7020 31 1 2.0708 -2.5599 -0.6121 32 1 0.3097 -4.1611 0.0679 33 1 1.8313 -5.0131 -0.2902 34 1 0.7760 -5.8339 1.8199 35 1 2.3714 -5.0993 2.1160 36 1 -0.9495 -7.1298 3.7586 37 1 2.5048 -2.7379 2.9986 38 1 1.0071 -1.8514 3.3711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306554470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:38 Heat of formation + Delta-G solvation = -64.214970 kcal Electronic energy + Delta-G solvation = -16881.590620 eV Core-core repulsion = 14337.236843 eV Total energy + Delta-G solvation = -2544.353777 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.02850 -36.95038 -33.54251 -32.42455 -30.97602 -29.74886 -27.15012 -25.76027 -24.85757 -21.91586 -21.35498 -20.03685 -18.50561 -16.66424 -16.02102 -15.26642 -14.97441 -14.65384 -14.15049 -13.73131 -13.18379 -12.83844 -12.63487 -12.29831 -12.22057 -11.96314 -11.95709 -11.75176 -11.37328 -11.03971 -10.94325 -10.67793 -10.61048 -10.50626 -10.12680 -9.78115 -9.75481 -9.37320 -8.80924 -8.63053 -8.25022 -7.54106 -5.93871 -4.00039 3.31516 3.39474 3.43004 4.29341 4.44202 4.59015 5.02385 5.12590 5.22327 5.36101 5.53185 5.65889 5.79067 5.92432 5.93926 5.96829 6.06421 6.19048 6.22681 6.28806 6.43227 6.48010 6.60341 6.72510 6.83295 6.87599 7.04323 7.30164 7.47486 7.76519 7.78836 7.80975 7.92072 8.13985 8.23060 8.52984 9.04503 9.64028 11.12057 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046935 B = 0.006587 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.432315 B = 4249.628617 C = 4510.347719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.132 3.868 3 C -0.177 4.177 4 O -0.553 6.553 5 C 0.030 3.970 6 N -0.528 5.528 7 C 0.051 3.949 8 C -0.116 4.116 9 C -0.110 4.110 10 C 0.055 3.945 11 H 0.034 0.966 12 C -0.514 4.514 13 H 0.053 0.947 14 C 0.062 3.938 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.066 3.934 21 H 0.062 0.938 22 H 0.047 0.953 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.367 0.633 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.013 0.987 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.027 0.973 36 H 0.259 0.741 37 H 0.015 0.985 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 11.027 -6.872 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.091 3.909 3 C -0.235 4.235 4 O -0.358 6.358 5 C -0.099 4.099 6 N -0.252 5.252 7 C -0.077 4.077 8 C -0.154 4.154 9 C -0.149 4.149 10 C 0.036 3.964 11 H 0.052 0.948 12 C -0.553 4.553 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.717 3.283 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.061 4.061 21 H 0.081 0.919 22 H 0.066 0.934 23 H 0.101 0.899 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.214 0.786 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.903 10.840 -7.128 13.547 hybrid contribution 1.604 -0.418 1.451 2.203 sum 5.507 10.422 -5.677 13.083 Atomic orbital electron populations 1.21572 0.91994 1.04225 1.00599 1.21289 0.95858 0.89262 0.84441 1.22481 1.01006 0.97373 1.02614 1.86590 1.25795 1.79010 1.44450 1.22743 0.96110 0.92714 0.98353 1.61926 1.54368 1.00786 1.08116 1.22382 0.94380 0.93782 0.97156 1.21650 0.99859 0.94512 0.99369 1.21661 0.99245 1.02287 0.91664 1.18665 0.95119 0.88227 0.94342 0.94806 1.21203 1.33244 1.06135 0.94680 0.92909 1.24939 0.95216 0.96868 0.96850 1.69910 1.34814 1.15830 1.32139 0.86586 0.77688 0.78833 0.85162 1.19915 1.21043 1.21121 1.22346 0.98279 0.99083 0.86371 0.91903 0.93392 0.89920 0.92813 0.91919 0.91668 0.78634 0.90759 0.95457 0.96888 0.89531 0.92241 0.93827 0.89304 0.95406 0.93150 0.96680 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.62 37.16 0.32 -1.45 16 2 C 0.13 1.72 1.17 -90.62 -0.11 1.62 16 3 C -0.18 -1.81 8.81 37.15 0.33 -1.48 16 4 O -0.55 -7.36 10.16 -35.23 -0.36 -7.71 16 5 C 0.03 0.45 4.33 -3.82 -0.02 0.43 16 6 N -0.53 -9.82 3.55 -234.67 -0.83 -10.65 16 7 C 0.05 0.92 5.21 -3.84 -0.02 0.90 16 8 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16 9 C -0.11 -2.69 5.03 -26.57 -0.13 -2.83 16 10 C 0.06 1.41 2.26 -91.65 -0.21 1.20 16 11 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 12 C -0.51 -14.30 8.56 -34.43 -0.29 -14.60 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.73 11.37 55.43 0.63 -25.10 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.07 1.43 4.64 -3.84 -0.02 1.41 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 1.39 7.45 -51.93 -0.39 1.00 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.37 3.65 9.01 45.56 0.41 4.06 16 28 H 0.07 1.08 7.76 -51.93 -0.40 0.68 16 29 H 0.03 0.39 7.98 -51.93 -0.41 -0.03 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 1.45 5.24 -51.93 -0.27 1.18 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 35 H 0.03 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 1.20 7.92 -51.93 -0.41 0.79 16 LS Contribution 293.10 15.07 4.42 4.42 Total: -1.00 -29.31 293.10 -7.56 -36.87 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.99 Total: 1.40 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -0.40 Total: -15.68 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.20 Total: -35.75 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.36 Total: -7.71 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.31 -7.56 -36.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306554470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.344 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds