Wall clock time and date at job start Sun Mar 29 2020 21:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47241 * 2 1 4 4 O 1.42902 * 109.46731 * 240.00041 * 2 1 3 5 5 C 1.52996 * 109.46892 * 120.00216 * 2 1 3 6 6 N 1.46903 * 109.47386 * 53.90509 * 5 2 1 7 7 C 1.46839 * 111.00190 * 77.35276 * 6 5 2 8 8 C 1.53041 * 109.52259 * 185.84146 * 7 6 5 9 9 C 1.53113 * 109.31164 * 300.80249 * 8 7 6 10 10 C 1.53196 * 109.11692 * 57.63516 * 9 8 7 11 11 H 1.08993 * 109.49816 * 62.32164 * 10 9 8 12 12 C 1.50706 * 109.52611 * 182.40688 * 10 9 8 13 13 H 1.07993 * 120.00329 * 119.83835 * 12 10 9 14 14 C 1.37883 * 119.99828 * 299.84405 * 12 10 9 15 15 N 1.31515 * 119.99797 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00174 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46819 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47148 * 119.99794 * 16 14 12 19 19 H 1.48499 * 109.47094 * 239.99684 * 16 14 12 20 20 C 1.46847 * 111.00210 * 201.56659 * 6 5 2 21 21 H 1.09000 * 109.46709 * 300.00212 * 1 2 3 22 22 H 1.09003 * 109.47099 * 59.99444 * 1 2 3 23 23 H 1.08990 * 109.47298 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47305 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47784 * 299.99885 * 3 2 1 26 26 H 1.09000 * 109.47442 * 60.00236 * 3 2 1 27 27 H 0.96706 * 113.99833 * 180.02562 * 4 2 1 28 28 H 1.08997 * 109.47058 * 293.90034 * 5 2 1 29 29 H 1.09006 * 109.47165 * 173.90110 * 5 2 1 30 30 H 1.08999 * 109.46748 * 65.82220 * 7 6 5 31 31 H 1.09005 * 109.45245 * 305.84643 * 7 6 5 32 32 H 1.09001 * 109.50051 * 60.76263 * 8 7 6 33 33 H 1.09004 * 109.50643 * 180.83435 * 8 7 6 34 34 H 1.09002 * 109.52335 * 177.57923 * 9 8 7 35 35 H 1.09008 * 109.52202 * 297.76739 * 9 8 7 36 36 H 0.96997 * 120.00093 * 180.02562 * 15 14 12 37 37 H 1.09004 * 109.45712 * 294.17622 * 20 6 5 38 38 H 1.09004 * 109.46418 * 54.13798 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 1.4339 -2.0573 1.3250 7 6 2.0859 -2.9847 0.3917 8 6 1.3383 -4.3200 0.3915 9 6 1.3444 -4.9039 1.8070 10 6 0.7036 -3.8973 2.7677 11 1 -0.3350 -3.7317 2.4816 12 6 0.7581 -4.4377 4.1735 13 1 1.2862 -3.8924 4.9416 14 6 0.1337 -5.6285 4.4790 15 7 -0.5099 -6.2924 3.5437 16 14 0.2005 -6.2980 6.2216 17 1 0.9799 -5.3693 7.0791 18 1 -1.1790 -6.4260 6.7559 19 1 0.8544 -7.6313 6.2148 20 6 1.4696 -2.5743 2.6990 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 2.9703 -0.7122 -1.2328 28 1 1.7685 -0.1483 2.1358 29 1 3.1246 -0.8168 1.1963 30 1 3.1182 -3.1464 0.7020 31 1 2.0708 -2.5599 -0.6121 32 1 0.3097 -4.1611 0.0679 33 1 1.8313 -5.0131 -0.2902 34 1 0.7760 -5.8339 1.8199 35 1 2.3714 -5.0993 2.1160 36 1 -0.9495 -7.1298 3.7586 37 1 2.5048 -2.7379 2.9986 38 1 1.0071 -1.8514 3.3711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306554470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:38 Heat of formation + Delta-G solvation = -83.853441 kcal Electronic energy + Delta-G solvation = -16882.442208 eV Core-core repulsion = 14337.236843 eV Total energy + Delta-G solvation = -2545.205365 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35996 -38.36498 -35.33027 -33.85304 -32.43902 -31.62430 -28.11026 -27.15595 -26.84109 -23.54127 -23.11910 -21.11569 -20.32631 -18.49312 -17.42139 -16.66553 -16.48594 -16.14619 -15.58803 -15.13528 -14.93172 -14.38101 -14.25177 -13.97192 -13.53188 -13.31423 -13.03129 -12.89172 -12.84440 -12.67250 -12.59709 -12.38568 -12.27687 -11.76021 -11.71598 -11.59806 -11.40352 -11.18260 -10.65131 -10.50703 -10.22268 -9.01438 -8.08064 -6.22793 1.39745 1.41012 1.52635 2.42369 3.09737 3.18592 3.45026 3.96837 4.06204 4.19337 4.30081 4.32993 4.45698 4.55463 4.67385 4.74188 4.82291 4.84063 4.94466 4.99416 5.01796 5.10305 5.11799 5.20803 5.29491 5.34492 5.41040 5.52330 5.59806 5.63915 5.98024 6.13506 6.23348 6.43599 6.48571 6.90842 6.96362 7.45259 8.96796 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046935 B = 0.006587 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.432315 B = 4249.628617 C = 4510.347719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.137 3.863 3 C -0.168 4.168 4 O -0.567 6.567 5 C 0.029 3.971 6 N -0.538 5.538 7 C 0.058 3.942 8 C -0.111 4.111 9 C -0.103 4.103 10 C 0.053 3.947 11 H -0.005 1.005 12 C -0.536 4.536 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.917 5.917 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.081 3.919 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.383 0.617 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.018 0.982 31 H 0.109 0.891 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.020 0.980 36 H 0.260 0.740 37 H 0.011 0.989 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 12.472 -7.061 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.096 3.904 3 C -0.226 4.226 4 O -0.375 6.375 5 C -0.100 4.100 6 N -0.262 5.262 7 C -0.069 4.069 8 C -0.148 4.148 9 C -0.141 4.141 10 C 0.034 3.966 11 H 0.013 0.987 12 C -0.574 4.574 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.556 5.556 16 Si 0.781 3.219 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.047 4.047 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.232 0.768 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.254 12.303 -7.326 15.253 hybrid contribution 1.165 -0.867 1.474 2.069 sum 6.420 11.436 -5.852 14.361 Atomic orbital electron populations 1.21563 0.93187 1.02250 1.01485 1.21224 0.95005 0.90773 0.83389 1.22381 1.01989 0.94941 1.03293 1.86546 1.27469 1.79209 1.44258 1.22886 0.96831 0.90468 0.99788 1.61862 1.55681 1.02471 1.06162 1.22350 0.93894 0.92435 0.98223 1.21576 0.99819 0.96429 0.97023 1.21472 0.97792 1.00793 0.94078 1.18589 0.93593 0.90743 0.93677 0.98723 1.21568 1.33425 1.06579 0.95853 0.93052 1.25753 0.94818 0.97165 1.00891 1.70058 1.35363 1.16118 1.34110 0.85542 0.77829 0.78186 0.80304 1.19099 1.20570 1.20607 1.22010 0.97108 0.97067 0.88524 0.91280 0.92341 0.93250 0.91225 0.91292 0.90975 0.76782 0.90359 0.93973 0.96394 0.87297 0.93693 0.91723 0.92652 0.96083 0.93085 0.97057 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.62 71.98 0.62 -2.77 16 2 C 0.14 3.20 1.17 -10.80 -0.01 3.19 16 3 C -0.17 -2.83 8.81 71.98 0.63 -2.19 16 4 O -0.57 -13.39 10.16 -148.98 -1.51 -14.91 16 5 C 0.03 0.78 4.33 86.30 0.37 1.16 16 6 N -0.54 -19.51 3.55 -896.36 -3.18 -22.69 16 7 C 0.06 2.04 5.21 86.33 0.45 2.49 16 8 C -0.11 -4.53 6.09 30.65 0.19 -4.34 16 9 C -0.10 -5.16 5.03 30.70 0.15 -5.01 16 10 C 0.05 2.78 2.26 -11.46 -0.03 2.75 16 11 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 12 C -0.54 -30.46 8.56 25.60 0.22 -30.24 16 13 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 14 C 0.01 0.70 5.30 84.66 0.45 1.15 16 15 N -0.92 -54.63 11.37 21.45 0.24 -54.38 16 16 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 C 0.08 3.49 4.64 86.32 0.40 3.89 16 21 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.05 1.64 7.45 -2.39 -0.02 1.62 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.38 6.22 9.01 -74.05 -0.67 5.55 16 28 H 0.08 2.09 7.76 -2.39 -0.02 2.07 16 29 H 0.04 1.05 7.98 -2.38 -0.02 1.03 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 3.38 5.24 -2.38 -0.01 3.36 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 34 H 0.05 3.13 6.17 -2.39 -0.01 3.11 16 35 H 0.02 1.03 8.14 -2.38 -0.02 1.02 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.06 2.38 7.92 -2.38 -0.02 2.36 16 Total: -1.00 -64.09 293.10 1.37 -62.72 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.35 Total: 12.70 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 3.45 Total: -29.93 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -2.94 Total: -77.07 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.51 Total: -14.91 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -64.09 1.37 -62.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306554470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.131 kcal (2) G-P(sol) polarization free energy of solvation -64.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds