Wall clock time and date at job start Sun Mar 29 2020 21:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47330 * 2 1 4 4 H 1.08995 * 109.47167 * 57.27603 * 3 2 1 5 5 C 1.50696 * 109.47102 * 177.27420 * 3 2 1 6 6 H 1.07995 * 120.00297 * 120.00007 * 5 3 2 7 7 C 1.37884 * 120.00127 * 300.00410 * 5 3 2 8 8 N 1.31516 * 119.99729 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00047 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47311 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47142 * 119.99895 * 9 7 5 12 12 H 1.48505 * 109.46861 * 239.99413 * 9 7 5 13 13 N 1.46905 * 109.47118 * 297.27394 * 3 2 1 14 14 C 1.47603 * 111.00109 * 296.39068 * 13 3 2 15 15 C 1.50730 * 108.45297 * 152.98438 * 14 13 3 16 16 O 1.43944 * 111.87755 * 93.37846 * 15 14 13 17 17 C 1.44222 * 116.11516 * 319.24288 * 16 15 14 18 18 C 1.50724 * 112.84736 * 318.68604 * 17 16 15 19 19 H 1.08996 * 109.53261 * 331.63159 * 18 17 16 20 20 C 1.53001 * 109.52691 * 211.42050 * 18 17 16 21 21 C 1.40463 * 110.99709 * 167.94569 * 13 3 2 22 22 H 1.09004 * 109.46833 * 300.00154 * 1 2 3 23 23 H 1.09002 * 109.47268 * 59.99373 * 1 2 3 24 24 H 1.08993 * 109.47425 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46606 * 240.00347 * 2 1 3 26 26 H 1.08993 * 109.47193 * 120.00406 * 2 1 3 27 27 H 0.96998 * 119.99866 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.64175 * 272.68471 * 14 13 3 29 29 H 1.09002 * 109.63589 * 33.30188 * 14 13 3 30 30 H 1.08997 * 109.00616 * 332.75927 * 15 14 13 31 31 H 1.08997 * 108.93479 * 213.95150 * 15 14 13 32 32 H 1.09001 * 108.80727 * 197.82714 * 17 16 15 33 33 H 1.08991 * 108.81089 * 79.55827 * 17 16 15 34 34 H 1.08998 * 109.47393 * 300.34938 * 20 18 17 35 35 H 1.09002 * 109.47095 * 60.35309 * 20 18 17 36 36 H 1.08999 * 109.47218 * 180.34646 * 20 18 17 37 37 H 1.09004 * 109.08370 * 308.33118 * 21 13 3 38 38 H 1.09004 * 109.08455 * 67.38046 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6374 1.9702 0.8645 5 6 3.5455 1.4429 0.0676 6 1 4.1215 1.8978 -0.7247 7 6 4.1877 0.8625 1.1408 8 7 3.4863 0.3089 2.1058 9 14 6.0537 0.8637 1.2249 10 1 6.6029 1.5446 0.0249 11 1 6.4937 1.5829 2.4475 12 1 6.5481 -0.5359 1.2692 13 7 1.6049 2.1157 -1.2311 14 6 2.2019 1.4792 -2.4215 15 6 1.2844 1.7076 -3.5953 16 8 1.6515 2.8820 -4.3424 17 6 2.0500 4.0298 -3.5654 18 6 1.1861 4.2414 -2.3485 19 1 0.1876 3.8471 -2.5374 20 6 1.0967 5.7370 -2.0386 21 6 1.8141 3.5022 -1.1474 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.9380 -0.0991 2.8611 28 1 3.1758 1.9242 -2.6254 29 1 2.3142 0.4090 -2.2471 30 1 0.2638 1.8236 -3.2308 31 1 1.3294 0.8400 -4.2535 32 1 1.9930 4.9175 -4.1953 33 1 3.0827 3.8953 -3.2440 34 1 2.0963 6.1300 -1.8530 35 1 0.6532 6.2580 -2.8871 36 1 0.4768 5.8885 -1.1549 37 1 1.3668 3.8751 -0.2259 38 1 2.8858 3.7004 -1.1287 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306871936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:26 Heat of formation + Delta-G solvation = -48.992361 kcal Electronic energy + Delta-G solvation = -17311.521869 eV Core-core repulsion = 14767.828194 eV Total energy + Delta-G solvation = -2543.693675 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36572 -36.28605 -34.19134 -32.59089 -31.13791 -28.91823 -26.74924 -26.02051 -24.51836 -22.71107 -20.92286 -19.80826 -18.84510 -16.71143 -16.15392 -15.85160 -14.78496 -14.71584 -14.29632 -13.79413 -13.06265 -12.89042 -12.55184 -12.49939 -12.35917 -11.83683 -11.64988 -11.36756 -11.27871 -11.01589 -10.84576 -10.69108 -10.50710 -10.33643 -10.06125 -9.86940 -9.59602 -9.41917 -9.06802 -9.00550 -8.40256 -7.11984 -6.02555 -4.15956 3.22902 3.31919 3.35319 4.23577 4.36455 4.89559 5.10825 5.20948 5.23057 5.49125 5.73910 5.79351 5.81519 5.94962 5.97879 6.12781 6.14858 6.28544 6.31027 6.41394 6.44692 6.52674 6.55693 6.66449 6.77294 6.82832 7.09042 7.15060 7.34378 7.56874 7.63365 7.75607 7.94684 8.12254 8.37145 8.55775 8.94383 9.52035 10.96636 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.009617 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.254884 B = 2910.938012 C = 3266.950272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.219 3.781 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.551 5.551 14 C 0.038 3.962 15 C 0.063 3.937 16 O -0.403 6.403 17 C 0.070 3.930 18 C -0.130 4.130 19 H 0.082 0.918 20 C -0.138 4.138 21 C 0.087 3.913 22 H 0.038 0.962 23 H 0.048 0.952 24 H 0.025 0.975 25 H 0.034 0.966 26 H 0.092 0.908 27 H 0.261 0.739 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 4.788 -7.038 9.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.114 3.886 4 H 0.055 0.945 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.275 5.275 14 C -0.090 4.090 15 C -0.014 4.014 16 O -0.323 6.323 17 C -0.006 4.006 18 C -0.149 4.149 19 H 0.100 0.900 20 C -0.196 4.196 21 C -0.043 4.043 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.629 4.647 -7.087 9.657 hybrid contribution 2.008 0.059 0.586 2.093 sum -2.621 4.706 -6.501 8.443 Atomic orbital electron populations 1.21706 0.98818 0.98421 1.00593 1.21639 0.92247 0.99174 1.01940 1.19268 0.92706 0.91014 0.85657 0.94462 1.21762 0.92614 1.37440 1.06311 0.92755 1.24908 0.97963 0.95016 0.95527 1.69881 1.34888 1.37734 1.09807 0.86625 0.86215 0.77761 0.77927 1.19974 1.21013 1.20956 1.59649 1.60633 1.02651 1.04565 1.22175 0.95400 1.01339 0.90084 1.22549 0.98855 0.86510 0.93480 1.88164 1.88072 1.21379 1.34734 1.22351 0.97450 0.87962 0.92883 1.21708 1.00922 0.96125 0.96154 0.89963 1.21701 1.01727 0.94842 1.01298 1.20927 0.97910 0.89273 0.96222 0.94302 0.93341 0.95581 0.94763 0.88973 0.92919 0.94167 0.89302 0.92316 0.90305 0.90489 0.93605 0.92739 0.92929 0.92349 0.91789 0.95752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.78 37.16 0.36 -2.37 16 2 C -0.11 -2.57 5.11 -26.73 -0.14 -2.71 16 3 C 0.22 5.25 1.69 -68.86 -0.12 5.13 16 4 H 0.04 1.00 7.82 -51.93 -0.41 0.59 16 5 C -0.54 -14.24 7.31 -34.44 -0.25 -14.49 16 6 H 0.05 1.46 6.43 -52.49 -0.34 1.12 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.47 11.30 55.43 0.63 -23.85 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.55 -11.29 3.32 -232.99 -0.77 -12.06 16 14 C 0.04 0.73 4.17 -4.58 -0.02 0.71 16 15 C 0.06 1.06 6.35 36.02 0.23 1.29 16 16 O -0.40 -7.03 10.92 -35.23 -0.38 -7.42 16 17 C 0.07 1.11 5.81 36.02 0.21 1.32 16 18 C -0.13 -2.03 2.47 -91.03 -0.22 -2.25 16 19 H 0.08 1.34 7.25 -51.93 -0.38 0.97 16 20 C -0.14 -1.76 8.92 37.16 0.33 -1.43 16 21 C 0.09 1.66 4.12 -6.43 -0.03 1.63 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.92 7.68 -51.93 -0.40 0.52 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.03 0.77 6.04 -51.93 -0.31 0.46 16 26 H 0.09 2.39 6.00 -51.93 -0.31 2.08 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.04 0.84 6.17 -51.93 -0.32 0.52 16 29 H 0.09 1.80 5.66 -51.93 -0.29 1.51 16 30 H 0.06 1.00 7.26 -51.93 -0.38 0.62 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.05 7.70 -51.93 -0.40 0.65 16 33 H 0.05 0.78 6.61 -51.93 -0.34 0.44 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.25 7.73 -51.93 -0.40 0.85 16 38 H 0.02 0.51 6.77 -51.93 -0.35 0.16 16 LS Contribution 283.66 15.07 4.27 4.27 Total: -1.00 -27.00 283.66 -7.32 -34.31 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.30 Total: 0.21 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 0.26 Total: -11.43 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.15 Total: -35.91 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.38 Total: -7.42 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.00 -7.32 -34.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306871936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.681 kcal (2) G-P(sol) polarization free energy of solvation -26.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds