Wall clock time and date at job start Sun Mar 29 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47330 * 2 1 4 4 H 1.08995 * 109.47167 * 57.27603 * 3 2 1 5 5 C 1.50696 * 109.47102 * 177.27420 * 3 2 1 6 6 H 1.07995 * 120.00297 * 120.00007 * 5 3 2 7 7 C 1.37884 * 120.00127 * 300.00410 * 5 3 2 8 8 N 1.31516 * 119.99729 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00047 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47311 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47142 * 119.99895 * 9 7 5 12 12 H 1.48505 * 109.46861 * 239.99413 * 9 7 5 13 13 N 1.46905 * 109.47118 * 297.27394 * 3 2 1 14 14 C 1.47603 * 111.00109 * 296.39068 * 13 3 2 15 15 C 1.50730 * 108.45297 * 152.98438 * 14 13 3 16 16 O 1.43944 * 111.87755 * 93.37846 * 15 14 13 17 17 C 1.44222 * 116.11516 * 319.24288 * 16 15 14 18 18 C 1.50724 * 112.84736 * 318.68604 * 17 16 15 19 19 H 1.08996 * 109.53261 * 331.63159 * 18 17 16 20 20 C 1.53001 * 109.52691 * 211.42050 * 18 17 16 21 21 C 1.40463 * 110.99709 * 167.94569 * 13 3 2 22 22 H 1.09004 * 109.46833 * 300.00154 * 1 2 3 23 23 H 1.09002 * 109.47268 * 59.99373 * 1 2 3 24 24 H 1.08993 * 109.47425 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46606 * 240.00347 * 2 1 3 26 26 H 1.08993 * 109.47193 * 120.00406 * 2 1 3 27 27 H 0.96998 * 119.99866 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.64175 * 272.68471 * 14 13 3 29 29 H 1.09002 * 109.63589 * 33.30188 * 14 13 3 30 30 H 1.08997 * 109.00616 * 332.75927 * 15 14 13 31 31 H 1.08997 * 108.93479 * 213.95150 * 15 14 13 32 32 H 1.09001 * 108.80727 * 197.82714 * 17 16 15 33 33 H 1.08991 * 108.81089 * 79.55827 * 17 16 15 34 34 H 1.08998 * 109.47393 * 300.34938 * 20 18 17 35 35 H 1.09002 * 109.47095 * 60.35309 * 20 18 17 36 36 H 1.08999 * 109.47218 * 180.34646 * 20 18 17 37 37 H 1.09004 * 109.08370 * 308.33118 * 21 13 3 38 38 H 1.09004 * 109.08455 * 67.38046 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6374 1.9702 0.8645 5 6 3.5455 1.4429 0.0676 6 1 4.1215 1.8978 -0.7247 7 6 4.1877 0.8625 1.1408 8 7 3.4863 0.3089 2.1058 9 14 6.0537 0.8637 1.2249 10 1 6.6029 1.5446 0.0249 11 1 6.4937 1.5829 2.4475 12 1 6.5481 -0.5359 1.2692 13 7 1.6049 2.1157 -1.2311 14 6 2.2019 1.4792 -2.4215 15 6 1.2844 1.7076 -3.5953 16 8 1.6515 2.8820 -4.3424 17 6 2.0500 4.0298 -3.5654 18 6 1.1861 4.2414 -2.3485 19 1 0.1876 3.8471 -2.5374 20 6 1.0967 5.7370 -2.0386 21 6 1.8141 3.5022 -1.1474 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.9380 -0.0991 2.8611 28 1 3.1758 1.9242 -2.6254 29 1 2.3142 0.4090 -2.2471 30 1 0.2638 1.8236 -3.2308 31 1 1.3294 0.8400 -4.2535 32 1 1.9930 4.9175 -4.1953 33 1 3.0827 3.8953 -3.2440 34 1 2.0963 6.1300 -1.8530 35 1 0.6532 6.2580 -2.8871 36 1 0.4768 5.8885 -1.1549 37 1 1.3668 3.8751 -0.2259 38 1 2.8858 3.7004 -1.1287 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306871936.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:25 Heat of formation + Delta-G solvation = -65.330551 kcal Electronic energy + Delta-G solvation = -17312.230346 eV Core-core repulsion = 14767.828194 eV Total energy + Delta-G solvation = -2544.402152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87896 -37.89917 -35.61777 -34.42642 -32.91389 -30.43376 -28.53730 -27.32826 -26.15492 -24.42909 -22.53872 -21.29848 -20.52134 -18.52031 -17.71721 -17.45984 -16.55536 -16.28123 -15.74771 -15.47720 -14.83386 -14.18734 -14.15500 -14.01682 -13.67087 -13.49349 -13.23069 -13.11809 -12.82679 -12.68530 -12.48057 -12.30897 -12.16330 -11.87192 -11.65555 -11.60346 -11.32265 -11.17148 -10.90153 -10.47321 -10.34921 -8.91688 -8.05959 -6.28717 1.32647 1.36377 1.45344 2.37005 2.92881 3.12061 3.30956 3.83581 3.91132 4.14906 4.33446 4.38359 4.46335 4.62194 4.67846 4.70936 4.76334 4.83392 4.85281 4.92950 4.95253 5.07538 5.11844 5.21977 5.25336 5.30360 5.44206 5.45115 5.50481 5.62415 5.80220 6.04920 6.15755 6.28028 6.39123 6.84673 6.93905 7.42393 8.88716 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.009617 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.254884 B = 2910.938012 C = 3266.950272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.106 4.106 3 C 0.225 3.775 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.944 3.056 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.544 5.544 14 C 0.044 3.956 15 C 0.070 3.930 16 O -0.410 6.410 17 C 0.068 3.932 18 C -0.117 4.117 19 H 0.082 0.918 20 C -0.133 4.133 21 C 0.086 3.914 22 H 0.031 0.969 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.028 0.972 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.054 0.946 38 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 5.368 -8.444 11.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.118 3.882 4 H 0.021 0.979 5 C -0.590 4.590 6 H 0.061 0.939 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.267 5.267 14 C -0.084 4.084 15 C -0.006 4.006 16 O -0.330 6.330 17 C -0.008 4.008 18 C -0.136 4.136 19 H 0.100 0.900 20 C -0.191 4.191 21 C -0.044 4.044 22 H 0.050 0.950 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -5.195 5.235 -8.506 11.258 hybrid contribution 2.196 -0.098 1.030 2.427 sum -2.999 5.137 -7.475 9.553 Atomic orbital electron populations 1.21567 0.96126 0.99859 1.00746 1.21475 0.94598 0.97940 1.00454 1.19052 0.91379 0.91623 0.86144 0.97863 1.21951 0.93976 1.37074 1.05955 0.93948 1.25567 1.01752 0.94928 0.95386 1.69996 1.36251 1.38276 1.10186 0.85728 0.81687 0.77807 0.77721 1.20055 1.20659 1.20414 1.59676 1.60144 1.03228 1.03634 1.22159 0.95241 1.00354 0.90615 1.22490 0.97973 0.87448 0.92701 1.88161 1.88050 1.21707 1.35101 1.22466 0.96371 0.88554 0.93405 1.21599 1.00187 0.97625 0.94169 0.89955 1.21685 1.02224 0.92598 1.02579 1.20993 0.96638 0.88867 0.97897 0.94977 0.92248 0.93491 0.94608 0.91999 0.92856 0.96147 0.90236 0.91887 0.87984 0.87493 0.95373 0.92613 0.90340 0.92033 0.92767 0.98315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 9.78 71.98 0.70 -4.15 16 2 C -0.11 -4.94 5.11 30.59 0.16 -4.78 16 3 C 0.22 11.03 1.69 44.17 0.07 11.10 16 4 H 0.00 0.19 7.82 -2.39 -0.02 0.17 16 5 C -0.55 -29.65 7.31 25.60 0.19 -29.47 16 6 H 0.04 2.34 6.43 -2.91 -0.02 2.32 16 7 C 0.02 1.30 5.30 84.66 0.45 1.75 16 8 N -0.91 -51.25 11.30 21.45 0.24 -51.01 16 9 Si 0.94 43.58 29.54 68.60 2.03 45.61 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 13 N -0.54 -22.38 3.32 -891.04 -2.96 -25.34 16 14 C 0.04 1.69 4.17 85.43 0.36 2.05 16 15 C 0.07 2.23 6.35 71.25 0.45 2.69 16 16 O -0.41 -13.33 10.92 -148.98 -1.63 -14.96 16 17 C 0.07 2.02 5.81 71.24 0.41 2.43 16 18 C -0.12 -3.45 2.47 -11.06 -0.03 -3.48 16 19 H 0.08 2.49 7.25 -2.39 -0.02 2.47 16 20 C -0.13 -3.06 8.92 71.98 0.64 -2.42 16 21 C 0.09 3.31 4.12 87.94 0.36 3.68 16 22 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 23 H 0.06 2.15 7.68 -2.39 -0.02 2.13 16 24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.62 6.04 -2.39 -0.01 1.60 16 26 H 0.06 3.27 6.00 -2.39 -0.01 3.26 16 27 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.02 0.86 6.17 -2.39 -0.01 0.85 16 29 H 0.08 3.21 5.66 -2.39 -0.01 3.19 16 30 H 0.06 1.98 7.26 -2.39 -0.02 1.96 16 31 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.11 2.56 7.70 -2.39 -0.02 2.54 16 33 H 0.03 0.94 6.61 -2.39 -0.02 0.92 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.44 8.09 -2.39 -0.02 1.42 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 2.16 7.73 -2.38 -0.02 2.14 16 38 H 0.00 -0.05 6.77 -2.38 -0.02 -0.07 16 Total: -1.00 -58.17 283.66 2.47 -55.70 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.02 Total: 10.59 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 3.77 Total: -20.59 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -2.72 Total: -76.34 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -1.63 Total: -14.96 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -58.17 2.47 -55.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306871936.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.631 kcal (2) G-P(sol) polarization free energy of solvation -58.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds