Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47309 * 2 1 4 4 O 1.42903 * 109.47076 * 120.00073 * 2 1 3 5 5 C 1.53003 * 109.46987 * 239.99674 * 2 1 3 6 6 N 1.46892 * 109.47241 * 305.96509 * 5 2 1 7 7 C 1.46844 * 111.00232 * 285.94828 * 6 5 2 8 8 C 1.53039 * 109.52402 * 174.16233 * 7 6 5 9 9 C 1.53110 * 109.28046 * 59.17899 * 8 7 6 10 10 C 1.50697 * 109.57624 * 182.41020 * 9 8 7 11 11 H 1.07994 * 120.00586 * 119.71590 * 10 9 8 12 12 C 1.37880 * 119.99833 * 299.71177 * 10 9 8 13 13 N 1.31514 * 119.99933 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00217 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47310 * 89.99348 * 14 12 10 16 16 H 1.48498 * 109.47511 * 209.99543 * 14 12 10 17 17 H 1.48503 * 109.46861 * 329.99871 * 14 12 10 18 18 C 1.53120 * 109.16077 * 302.34515 * 9 8 7 19 19 C 1.46855 * 111.00112 * 161.73705 * 6 5 2 20 20 H 1.08999 * 109.47039 * 299.99869 * 1 2 3 21 21 H 1.08998 * 109.47332 * 60.00024 * 1 2 3 22 22 H 1.09005 * 109.47507 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47402 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.47225 * 299.99618 * 3 2 1 25 25 H 1.08995 * 109.47348 * 59.99764 * 3 2 1 26 26 H 0.96699 * 113.99963 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.46886 * 65.96779 * 5 2 1 28 28 H 1.08998 * 109.46845 * 185.96249 * 5 2 1 29 29 H 1.09002 * 109.46541 * 294.17777 * 7 6 5 30 30 H 1.09002 * 109.46265 * 54.14765 * 7 6 5 31 31 H 1.09000 * 109.50249 * 299.23128 * 8 7 6 32 32 H 1.09003 * 109.50278 * 179.12510 * 8 7 6 33 33 H 1.09006 * 109.52660 * 62.25218 * 9 8 7 34 34 H 0.97007 * 119.99897 * 180.02562 * 13 12 10 35 35 H 1.08995 * 109.50410 * 297.71318 * 18 9 8 36 36 H 1.09003 * 109.50319 * 177.59570 * 18 9 8 37 37 H 1.08998 * 109.46203 * 305.85689 * 19 6 5 38 38 H 1.09004 * 109.45890 * 65.83571 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0399 -0.7213 -1.2492 6 7 1.4363 -2.0585 -1.3233 7 6 2.0380 -2.9630 -0.3353 8 6 1.2891 -4.2976 -0.3409 9 6 1.3670 -4.9151 -1.7398 10 6 0.5817 -6.2010 -1.7686 11 1 -0.2543 -6.3083 -2.4439 12 6 0.9305 -7.2406 -0.9327 13 7 0.2448 -8.3626 -0.9575 14 14 2.3759 -7.0549 0.2358 15 1 1.8991 -6.5030 1.5293 16 1 3.0014 -8.3822 0.4644 17 1 3.3765 -6.1317 -0.3574 18 6 0.7779 -3.9330 -2.7562 19 6 1.5416 -2.6090 -2.6807 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 2.9702 -0.7122 1.2327 27 1 1.7664 -0.1495 -2.1360 28 1 3.1247 -0.8147 -1.1974 29 1 3.0846 -3.1328 -0.5882 30 1 1.9722 -2.5139 0.6557 31 1 0.2455 -4.1304 -0.0744 32 1 1.7457 -4.9742 0.3815 33 1 2.4080 -5.1185 -1.9909 34 1 0.4900 -9.0939 -0.3691 35 1 -0.2737 -3.7601 -2.5278 36 1 0.8693 -4.3491 -3.7595 37 1 1.1154 -1.9027 -3.3931 38 1 2.5905 -2.7806 -2.9226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307036126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = -54.913260 kcal Electronic energy + Delta-G solvation = -16989.843588 eV Core-core repulsion = 14445.893164 eV Total energy + Delta-G solvation = -2543.950424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.27424 -37.19763 -33.82120 -32.37565 -31.17804 -30.08595 -27.27681 -26.88430 -24.18182 -22.45249 -21.26056 -20.20194 -18.74713 -16.67532 -16.58350 -15.60343 -15.18578 -14.85996 -14.15882 -13.97438 -13.29433 -13.04692 -12.86636 -12.56890 -12.43064 -12.20327 -12.09517 -11.92630 -11.54878 -11.36239 -11.21541 -10.83417 -10.66436 -10.46171 -10.20261 -9.94292 -9.68460 -9.41991 -8.99020 -8.74492 -8.42953 -7.83813 -6.00296 -3.98025 3.33007 3.41771 3.44354 4.13013 4.33437 4.47674 4.87129 4.96671 5.05940 5.31612 5.37065 5.52368 5.55835 5.63819 5.78299 5.82918 5.89029 5.94768 6.03594 6.08110 6.13254 6.22152 6.35435 6.48358 6.57951 6.62643 6.81632 6.92587 7.04861 7.30456 7.50739 7.64067 7.69389 7.73623 7.86943 8.61090 9.04415 9.63262 11.13325 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.007698 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.804829 B = 3636.632838 C = 3954.888275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.131 3.869 3 C -0.176 4.176 4 O -0.551 6.551 5 C 0.030 3.970 6 N -0.524 5.524 7 C 0.039 3.961 8 C -0.114 4.114 9 C 0.012 3.988 10 C -0.509 4.509 11 H 0.072 0.928 12 C 0.067 3.933 13 N -0.905 5.905 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.299 1.299 17 H -0.268 1.268 18 C -0.095 4.095 19 C 0.055 3.945 20 H 0.049 0.951 21 H 0.062 0.938 22 H 0.082 0.918 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.369 0.631 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.015 0.985 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.000 18.048 1.018 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.090 3.910 3 C -0.234 4.234 4 O -0.357 6.357 5 C -0.099 4.099 6 N -0.248 5.248 7 C -0.088 4.088 8 C -0.151 4.151 9 C -0.007 4.007 10 C -0.546 4.546 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.719 3.281 15 H -0.205 1.205 16 H -0.227 1.227 17 H -0.194 1.194 18 C -0.133 4.133 19 C -0.073 4.073 20 H 0.068 0.932 21 H 0.081 0.919 22 H 0.101 0.899 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.216 0.784 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.033 0.967 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.836 17.841 1.297 18.295 hybrid contribution 2.324 -0.046 0.310 2.345 sum 6.161 17.796 1.607 18.900 Atomic orbital electron populations 1.21588 0.91915 1.04266 1.00743 1.21274 0.95941 0.89381 0.84363 1.22476 1.01078 0.97177 1.02712 1.86606 1.26026 1.78696 1.44361 1.22758 0.96334 0.92176 0.98645 1.61891 1.56329 1.01246 1.05355 1.22628 0.94952 0.94418 0.96825 1.21964 1.00273 0.93021 0.99862 1.19192 0.96361 0.94252 0.90887 1.21079 1.15482 0.96011 1.22073 0.90949 1.25024 0.96225 0.95151 0.96936 1.69910 1.40382 1.04668 1.39367 0.86829 0.83551 0.76014 0.81686 1.20510 1.22722 1.19371 1.21476 0.99713 0.92571 0.99526 1.22223 0.98292 0.97635 0.89138 0.93169 0.91925 0.89887 0.92740 0.91667 0.91763 0.78411 0.90640 0.95250 0.96696 0.88611 0.91464 0.93646 0.96308 0.92814 0.91847 0.92581 0.92129 0.95968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.62 37.15 0.32 -1.30 16 2 C 0.13 1.56 1.15 -90.62 -0.10 1.45 16 3 C -0.18 -1.60 8.81 37.15 0.33 -1.27 16 4 O -0.55 -7.16 9.94 -35.23 -0.35 -7.51 16 5 C 0.03 0.38 4.31 -3.83 -0.02 0.37 16 6 N -0.52 -8.67 3.58 -234.67 -0.84 -9.51 16 7 C 0.04 0.72 5.19 -3.83 -0.02 0.70 16 8 C -0.11 -2.56 4.84 -26.65 -0.13 -2.69 16 9 C 0.01 0.29 1.75 -91.65 -0.16 0.13 16 10 C -0.51 -14.62 9.15 -34.44 -0.31 -14.94 16 11 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 12 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 13 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 14 Si 0.89 22.67 24.36 -169.99 -4.14 18.53 16 15 H -0.28 -6.94 6.89 56.52 0.39 -6.55 16 16 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 17 H -0.27 -6.60 6.53 56.52 0.37 -6.23 16 18 C -0.10 -1.95 5.32 -26.65 -0.14 -2.09 16 19 C 0.05 0.93 5.43 -3.83 -0.02 0.91 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.08 1.28 7.45 -51.93 -0.39 0.89 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.37 3.60 9.03 45.56 0.41 4.01 16 27 H 0.08 0.88 7.83 -51.93 -0.41 0.47 16 28 H 0.03 0.37 8.02 -51.93 -0.42 -0.05 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 1.68 5.07 -51.93 -0.26 1.42 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.05 1.08 3.38 -51.93 -0.18 0.90 16 33 H 0.02 0.47 7.19 -51.93 -0.37 0.10 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.90 7.94 -51.93 -0.41 0.48 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 286.03 15.07 4.31 4.31 Total: -1.00 -31.38 286.03 -6.45 -37.83 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.85 Total: 0.71 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.36 Total: -16.82 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.07 Total: -37.05 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.35 Total: -7.51 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.14 Total: 18.53 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.38 -6.45 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307036126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.082 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds