Wall clock time and date at job start Sun Mar 29 2020 21:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47309 * 2 1 4 4 O 1.42903 * 109.47076 * 120.00073 * 2 1 3 5 5 C 1.53003 * 109.46987 * 239.99674 * 2 1 3 6 6 N 1.46892 * 109.47241 * 305.96509 * 5 2 1 7 7 C 1.46844 * 111.00232 * 285.94828 * 6 5 2 8 8 C 1.53039 * 109.52402 * 174.16233 * 7 6 5 9 9 C 1.53110 * 109.28046 * 59.17899 * 8 7 6 10 10 C 1.50697 * 109.57624 * 182.41020 * 9 8 7 11 11 H 1.07994 * 120.00586 * 119.71590 * 10 9 8 12 12 C 1.37880 * 119.99833 * 299.71177 * 10 9 8 13 13 N 1.31514 * 119.99933 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00217 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47310 * 89.99348 * 14 12 10 16 16 H 1.48498 * 109.47511 * 209.99543 * 14 12 10 17 17 H 1.48503 * 109.46861 * 329.99871 * 14 12 10 18 18 C 1.53120 * 109.16077 * 302.34515 * 9 8 7 19 19 C 1.46855 * 111.00112 * 161.73705 * 6 5 2 20 20 H 1.08999 * 109.47039 * 299.99869 * 1 2 3 21 21 H 1.08998 * 109.47332 * 60.00024 * 1 2 3 22 22 H 1.09005 * 109.47507 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47402 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.47225 * 299.99618 * 3 2 1 25 25 H 1.08995 * 109.47348 * 59.99764 * 3 2 1 26 26 H 0.96699 * 113.99963 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.46886 * 65.96779 * 5 2 1 28 28 H 1.08998 * 109.46845 * 185.96249 * 5 2 1 29 29 H 1.09002 * 109.46541 * 294.17777 * 7 6 5 30 30 H 1.09002 * 109.46265 * 54.14765 * 7 6 5 31 31 H 1.09000 * 109.50249 * 299.23128 * 8 7 6 32 32 H 1.09003 * 109.50278 * 179.12510 * 8 7 6 33 33 H 1.09006 * 109.52660 * 62.25218 * 9 8 7 34 34 H 0.97007 * 119.99897 * 180.02562 * 13 12 10 35 35 H 1.08995 * 109.50410 * 297.71318 * 18 9 8 36 36 H 1.09003 * 109.50319 * 177.59570 * 18 9 8 37 37 H 1.08998 * 109.46203 * 305.85689 * 19 6 5 38 38 H 1.09004 * 109.45890 * 65.83571 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0399 -0.7213 -1.2492 6 7 1.4363 -2.0585 -1.3233 7 6 2.0380 -2.9630 -0.3353 8 6 1.2891 -4.2976 -0.3409 9 6 1.3670 -4.9151 -1.7398 10 6 0.5817 -6.2010 -1.7686 11 1 -0.2543 -6.3083 -2.4439 12 6 0.9305 -7.2406 -0.9327 13 7 0.2448 -8.3626 -0.9575 14 14 2.3759 -7.0549 0.2358 15 1 1.8991 -6.5030 1.5293 16 1 3.0014 -8.3822 0.4644 17 1 3.3765 -6.1317 -0.3574 18 6 0.7779 -3.9330 -2.7562 19 6 1.5416 -2.6090 -2.6807 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 2.9702 -0.7122 1.2327 27 1 1.7664 -0.1495 -2.1360 28 1 3.1247 -0.8147 -1.1974 29 1 3.0846 -3.1328 -0.5882 30 1 1.9722 -2.5139 0.6557 31 1 0.2455 -4.1304 -0.0744 32 1 1.7457 -4.9742 0.3815 33 1 2.4080 -5.1185 -1.9909 34 1 0.4900 -9.0939 -0.3691 35 1 -0.2737 -3.7601 -2.5278 36 1 0.8693 -4.3491 -3.7595 37 1 1.1154 -1.9027 -3.3931 38 1 2.5905 -2.7806 -2.9226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307036126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:22 Heat of formation + Delta-G solvation = -78.163811 kcal Electronic energy + Delta-G solvation = -16990.851808 eV Core-core repulsion = 14445.893164 eV Total energy + Delta-G solvation = -2544.958644 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48150 -38.48209 -35.49999 -33.86438 -32.72987 -31.64846 -28.47995 -28.10399 -25.73937 -24.02222 -22.93065 -21.13552 -20.44657 -18.82974 -17.69604 -17.00132 -16.32572 -16.21104 -15.67631 -15.24239 -14.97204 -14.76511 -14.48953 -13.92424 -13.69167 -13.53235 -13.15885 -12.97228 -12.82855 -12.79067 -12.47793 -12.34096 -12.11927 -12.10010 -11.69367 -11.54841 -11.42570 -11.13336 -10.90440 -10.65370 -10.27532 -9.09282 -8.30539 -6.33073 1.28941 1.32185 1.43505 2.31471 2.99772 3.05033 3.42653 3.93194 4.05377 4.11612 4.24095 4.27081 4.30528 4.42759 4.62473 4.64634 4.75568 4.76680 4.83633 4.86545 4.95996 5.01785 5.07473 5.11153 5.19727 5.22351 5.30387 5.36454 5.54008 5.57824 5.68684 5.79497 6.24819 6.32908 6.34976 6.73889 6.93603 7.31999 8.86738 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.007698 C = 0.007078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.804829 B = 3636.632838 C = 3954.888275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.130 3.870 3 C -0.168 4.168 4 O -0.572 6.572 5 C 0.030 3.970 6 N -0.535 5.535 7 C 0.051 3.949 8 C -0.111 4.111 9 C 0.011 3.989 10 C -0.517 4.517 11 H 0.031 0.969 12 C 0.009 3.991 13 N -0.952 5.952 14 Si 0.953 3.047 15 H -0.268 1.268 16 H -0.298 1.298 17 H -0.250 1.250 18 C -0.093 4.093 19 C 0.063 3.937 20 H 0.052 0.948 21 H 0.077 0.923 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.383 0.617 27 H 0.094 0.906 28 H 0.042 0.958 29 H 0.019 0.981 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.015 0.985 34 H 0.265 0.735 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.027 20.969 1.361 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.090 3.910 3 C -0.226 4.226 4 O -0.380 6.380 5 C -0.098 4.098 6 N -0.260 5.260 7 C -0.077 4.077 8 C -0.149 4.149 9 C -0.008 4.008 10 C -0.555 4.555 11 H 0.049 0.951 12 C -0.188 4.188 13 N -0.593 5.593 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.225 1.225 17 H -0.174 1.174 18 C -0.130 4.130 19 C -0.064 4.064 20 H 0.071 0.929 21 H 0.096 0.904 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.232 0.768 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.874 20.795 1.630 21.670 hybrid contribution 1.580 -0.971 0.135 1.859 sum 7.454 19.824 1.764 21.252 Atomic orbital electron populations 1.21587 0.92986 1.02318 1.01679 1.21328 0.95206 0.90899 0.83587 1.22375 1.01905 0.94906 1.03368 1.86561 1.27495 1.79067 1.44835 1.22883 0.96891 0.89925 1.00053 1.61826 1.57146 1.02491 1.04493 1.22458 0.94311 0.92538 0.98359 1.21829 0.99783 0.95329 0.97968 1.19161 0.95232 0.93058 0.93310 1.21438 1.14677 0.98495 1.20873 0.95087 1.25906 0.99289 0.94672 0.98893 1.70061 1.42617 1.05790 1.40854 0.85775 0.80232 0.76333 0.79650 1.19422 1.22538 1.17392 1.21386 0.99268 0.94141 0.98253 1.22115 0.98032 0.96022 0.90265 0.92935 0.90411 0.93170 0.91374 0.90397 0.91767 0.76821 0.88723 0.93992 0.96233 0.87372 0.93355 0.94847 0.96721 0.92642 0.93322 0.92721 0.89183 0.95392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.62 71.98 0.62 -2.34 16 2 C 0.13 2.64 1.15 -10.80 -0.01 2.63 16 3 C -0.17 -2.34 8.81 71.98 0.63 -1.71 16 4 O -0.57 -13.14 9.94 -148.98 -1.48 -14.62 16 5 C 0.03 0.66 4.31 86.31 0.37 1.03 16 6 N -0.54 -16.21 3.58 -896.35 -3.21 -19.42 16 7 C 0.05 1.75 5.19 86.33 0.45 2.20 16 8 C -0.11 -4.94 4.84 30.64 0.15 -4.79 16 9 C 0.01 0.55 1.75 -11.46 -0.02 0.53 16 10 C -0.52 -30.77 9.15 25.60 0.23 -30.54 16 11 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 12 C 0.01 0.53 5.45 84.66 0.46 0.99 16 13 N -0.95 -61.66 13.96 21.45 0.30 -61.36 16 14 Si 0.95 47.06 24.36 68.60 1.67 48.73 16 15 H -0.27 -12.72 6.89 99.48 0.69 -12.03 16 16 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 17 H -0.25 -11.48 6.53 99.48 0.65 -10.83 16 18 C -0.09 -3.76 5.32 30.65 0.16 -3.59 16 19 C 0.06 1.97 5.43 86.32 0.47 2.44 16 20 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.05 1.49 7.45 -2.38 -0.02 1.47 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 24 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.38 6.14 9.03 -74.06 -0.67 5.47 16 27 H 0.09 1.73 7.83 -2.39 -0.02 1.71 16 28 H 0.04 0.84 8.02 -2.39 -0.02 0.82 16 29 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 3.51 5.07 -2.39 -0.01 3.50 16 31 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.03 1.54 3.38 -2.39 -0.01 1.54 16 33 H 0.01 0.72 7.19 -2.38 -0.02 0.71 16 34 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 35 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.09 2.31 7.94 -2.39 -0.02 2.29 16 38 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.64 286.03 1.07 -68.56 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.27 Total: 11.25 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 3.52 Total: -33.14 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -2.91 Total: -80.78 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.48 Total: -14.62 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.67 Total: 48.73 kcal Total: -69.64 1.07 -68.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307036126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.601 kcal (2) G-P(sol) polarization free energy of solvation -69.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds