Wall clock time and date at job start Sun Mar 29 2020 21:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47325 * 2 1 4 4 H 1.08997 * 109.47031 * 304.35550 * 3 2 1 5 5 C 1.50697 * 109.47072 * 184.35377 * 3 2 1 6 6 H 1.08002 * 120.00192 * 242.27546 * 5 3 2 7 7 C 1.37878 * 119.99995 * 62.27538 * 5 3 2 8 8 N 1.31512 * 120.00096 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99670 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47156 * 90.00320 * 9 7 5 11 11 H 1.48503 * 109.46737 * 210.00031 * 9 7 5 12 12 H 1.48495 * 109.47625 * 329.99959 * 9 7 5 13 13 N 1.46906 * 109.46979 * 64.35351 * 3 2 1 14 14 C 1.46838 * 111.00118 * 208.41371 * 13 3 2 15 15 C 1.53033 * 109.52782 * 174.16084 * 14 13 3 16 16 H 1.09004 * 109.50246 * 299.24446 * 15 14 13 17 17 O 1.42892 * 109.50820 * 179.12120 * 15 14 13 18 18 C 1.53119 * 109.27602 * 59.17832 * 15 14 13 19 19 C 1.53120 * 109.16319 * 302.34749 * 18 15 14 20 20 C 1.46847 * 110.99730 * 84.20350 * 13 3 2 21 21 H 1.08998 * 109.46281 * 65.83511 * 20 13 3 22 22 C 1.53004 * 109.46386 * 305.85586 * 20 13 3 23 23 H 1.09001 * 109.46586 * 294.92999 * 1 2 3 24 24 H 1.08996 * 109.47464 * 174.92936 * 1 2 3 25 25 H 1.08997 * 109.47434 * 54.92302 * 1 2 3 26 26 H 1.08995 * 109.46972 * 120.00731 * 2 1 3 27 27 H 1.09003 * 109.46929 * 240.00068 * 2 1 3 28 28 H 0.96997 * 120.00116 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46590 * 294.17888 * 14 13 3 30 30 H 1.09010 * 109.46215 * 54.14386 * 14 13 3 31 31 H 0.96699 * 114.00650 * 180.19730 * 17 15 14 32 32 H 1.08999 * 109.52493 * 182.44474 * 18 15 14 33 33 H 1.08993 * 109.52402 * 62.25579 * 18 15 14 34 34 H 1.09005 * 109.50277 * 297.71628 * 19 18 15 35 35 H 1.09002 * 109.53885 * 177.61191 * 19 18 15 36 36 H 1.08993 * 109.46889 * 68.89294 * 22 20 13 37 37 H 1.09001 * 109.47070 * 188.89761 * 22 20 13 38 38 H 1.09000 * 109.46843 * 308.89231 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6145 1.9783 -0.8484 5 6 3.5432 1.4438 -0.1079 6 1 4.1415 1.8583 0.6900 7 6 4.1546 0.9158 -1.2252 8 7 3.4261 0.4106 -2.1966 9 14 6.0178 0.9181 -1.3591 10 1 6.5576 -0.3366 -0.7763 11 1 6.4112 1.0094 -2.7882 12 1 6.5659 2.0833 -0.6195 13 7 1.6381 2.1040 1.2486 14 6 1.4827 3.5507 1.0513 15 6 0.9252 4.1841 2.3279 16 1 -0.0506 3.7531 2.5519 17 8 0.7934 5.5948 2.1424 18 6 1.8843 3.9087 3.4893 19 6 2.0667 2.3961 3.6427 20 6 2.5911 1.8146 2.3278 21 1 3.5554 2.2642 2.0910 22 6 2.7558 0.3001 2.4699 23 1 -0.3632 0.4332 0.9320 24 1 -0.3634 -1.0236 -0.0908 25 1 -0.3634 0.5905 -0.8410 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.8563 0.0395 -2.9828 29 1 2.4522 3.9921 0.8204 30 1 0.7950 3.7328 0.2253 31 1 0.4474 6.0625 2.9148 32 1 1.4700 4.3207 4.4095 33 1 2.8487 4.3728 3.2832 34 1 1.1087 1.9370 3.8872 35 1 2.7813 2.1941 4.4405 36 1 3.2753 -0.0924 1.5959 37 1 3.3355 0.0803 3.3664 38 1 1.7738 -0.1663 2.5489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307349617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:50 Heat of formation + Delta-G solvation = -46.104732 kcal Electronic energy + Delta-G solvation = -17415.576468 eV Core-core repulsion = 14872.008010 eV Total energy + Delta-G solvation = -2543.568458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.10058 -36.52808 -33.93450 -31.79943 -31.18225 -30.29318 -26.73318 -25.84088 -23.57657 -22.25764 -20.94211 -19.58902 -19.07078 -16.96649 -16.24754 -15.22769 -14.52657 -14.31214 -14.02841 -13.59780 -13.35055 -12.89070 -12.47622 -12.32684 -12.02180 -11.71804 -11.35072 -11.16786 -11.01481 -10.95136 -10.84497 -10.65498 -10.37713 -10.10657 -9.93736 -9.70915 -9.47774 -9.42050 -9.29848 -8.78291 -8.25064 -7.07855 -5.98738 -4.09023 3.27068 3.34860 3.37542 4.35596 4.42815 5.12492 5.17942 5.27020 5.34369 5.48557 5.69882 5.94365 6.02863 6.20643 6.22207 6.30661 6.35366 6.45836 6.49228 6.52315 6.58388 6.65703 6.71759 6.74323 7.05325 7.18002 7.19615 7.27352 7.48612 7.66628 7.81075 7.90112 8.02227 8.15892 8.34431 8.55275 9.00309 9.57075 11.02490 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.010043 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.746602 B = 2787.423978 C = 3038.935530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.217 3.783 4 H 0.033 0.967 5 C -0.543 4.543 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.884 3.116 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.527 5.527 14 C 0.072 3.928 15 C 0.106 3.894 16 H 0.057 0.943 17 O -0.571 6.571 18 C -0.148 4.148 19 C -0.112 4.112 20 C 0.089 3.911 21 H 0.049 0.951 22 C -0.146 4.146 23 H 0.045 0.955 24 H 0.023 0.977 25 H 0.035 0.965 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.260 0.740 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.370 0.630 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.032 0.968 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.750 3.230 9.501 10.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.051 0.949 5 C -0.582 4.582 6 H 0.082 0.918 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.253 5.253 14 C -0.057 4.057 15 C 0.047 3.953 16 H 0.075 0.925 17 O -0.375 6.375 18 C -0.186 4.186 19 C -0.150 4.150 20 C -0.019 4.019 21 H 0.067 0.933 22 C -0.203 4.203 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.216 0.784 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.051 0.949 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.958 2.804 8.845 10.088 hybrid contribution 1.632 0.495 0.142 1.711 sum -2.326 3.299 8.988 9.853 Atomic orbital electron populations 1.21688 0.99234 0.98196 1.00280 1.22055 0.92194 0.99289 1.02969 1.19247 0.93221 0.91298 0.85104 0.94896 1.21828 0.92695 1.39816 1.03878 0.91784 1.24913 0.97677 0.95213 0.95638 1.69909 1.34796 1.39721 1.07780 0.86717 0.86430 0.78368 0.77240 1.20654 1.21271 1.20098 1.62309 1.47377 1.06680 1.08929 1.21694 0.99719 0.89600 0.94689 1.21888 0.97510 0.79981 0.95905 0.92495 1.86502 1.88394 1.20382 1.42266 1.22271 1.00577 0.97821 0.97959 1.21662 1.01235 0.94001 0.98105 1.21424 0.94699 0.96036 0.89776 0.93301 1.22218 1.01087 0.95447 1.01571 0.93586 0.95743 0.94587 0.92158 0.89849 0.92958 0.94502 0.91312 0.78390 0.92754 0.91775 0.91830 0.92379 0.88921 0.94900 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.73 37.16 0.36 -2.42 16 2 C -0.13 -2.93 4.93 -26.73 -0.13 -3.06 16 3 C 0.22 5.25 1.61 -68.86 -0.11 5.14 16 4 H 0.03 0.90 7.65 -51.93 -0.40 0.51 16 5 C -0.54 -14.14 6.32 -34.44 -0.22 -14.36 16 6 H 0.06 1.68 5.22 -52.49 -0.27 1.40 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.65 11.47 55.43 0.64 -24.02 16 9 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.53 -10.95 3.92 -220.14 -0.86 -11.81 16 14 C 0.07 1.44 4.97 -3.84 -0.02 1.42 16 15 C 0.11 1.72 3.63 -26.65 -0.10 1.63 16 16 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 17 O -0.57 -8.74 13.32 -35.23 -0.47 -9.21 16 18 C -0.15 -2.19 5.63 -26.61 -0.15 -2.34 16 19 C -0.11 -1.75 5.36 -26.65 -0.14 -1.89 16 20 C 0.09 1.72 1.82 -67.72 -0.12 1.60 16 21 H 0.05 1.06 5.89 -51.93 -0.31 0.75 16 22 C -0.15 -2.75 7.32 37.16 0.27 -2.48 16 23 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.33 3.70 -51.93 -0.19 1.14 16 27 H 0.08 2.17 6.16 -51.93 -0.32 1.85 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.43 7.90 -51.92 -0.41 1.02 16 31 H 0.37 3.75 9.08 45.56 0.41 4.17 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 2.01 4.83 -51.93 -0.25 1.76 16 37 H 0.03 0.54 8.12 -51.93 -0.42 0.11 16 38 H 0.05 1.00 7.09 -51.93 -0.37 0.63 16 LS Contribution 283.15 15.07 4.27 4.27 Total: -1.00 -27.79 283.15 -7.35 -35.15 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.45 Total: 4.70 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -0.45 Total: -15.02 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.23 Total: -35.83 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.47 Total: -9.21 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.79 -7.35 -35.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307349617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.959 kcal (2) G-P(sol) polarization free energy of solvation -27.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds