Wall clock time and date at job start Sun Mar 29 2020 21:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47325 * 2 1 4 4 H 1.08997 * 109.47031 * 304.35550 * 3 2 1 5 5 C 1.50697 * 109.47072 * 184.35377 * 3 2 1 6 6 H 1.08002 * 120.00192 * 242.27546 * 5 3 2 7 7 C 1.37878 * 119.99995 * 62.27538 * 5 3 2 8 8 N 1.31512 * 120.00096 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99670 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47156 * 90.00320 * 9 7 5 11 11 H 1.48503 * 109.46737 * 210.00031 * 9 7 5 12 12 H 1.48495 * 109.47625 * 329.99959 * 9 7 5 13 13 N 1.46906 * 109.46979 * 64.35351 * 3 2 1 14 14 C 1.46838 * 111.00118 * 208.41371 * 13 3 2 15 15 C 1.53033 * 109.52782 * 174.16084 * 14 13 3 16 16 H 1.09004 * 109.50246 * 299.24446 * 15 14 13 17 17 O 1.42892 * 109.50820 * 179.12120 * 15 14 13 18 18 C 1.53119 * 109.27602 * 59.17832 * 15 14 13 19 19 C 1.53120 * 109.16319 * 302.34749 * 18 15 14 20 20 C 1.46847 * 110.99730 * 84.20350 * 13 3 2 21 21 H 1.08998 * 109.46281 * 65.83511 * 20 13 3 22 22 C 1.53004 * 109.46386 * 305.85586 * 20 13 3 23 23 H 1.09001 * 109.46586 * 294.92999 * 1 2 3 24 24 H 1.08996 * 109.47464 * 174.92936 * 1 2 3 25 25 H 1.08997 * 109.47434 * 54.92302 * 1 2 3 26 26 H 1.08995 * 109.46972 * 120.00731 * 2 1 3 27 27 H 1.09003 * 109.46929 * 240.00068 * 2 1 3 28 28 H 0.96997 * 120.00116 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46590 * 294.17888 * 14 13 3 30 30 H 1.09010 * 109.46215 * 54.14386 * 14 13 3 31 31 H 0.96699 * 114.00650 * 180.19730 * 17 15 14 32 32 H 1.08999 * 109.52493 * 182.44474 * 18 15 14 33 33 H 1.08993 * 109.52402 * 62.25579 * 18 15 14 34 34 H 1.09005 * 109.50277 * 297.71628 * 19 18 15 35 35 H 1.09002 * 109.53885 * 177.61191 * 19 18 15 36 36 H 1.08993 * 109.46889 * 68.89294 * 22 20 13 37 37 H 1.09001 * 109.47070 * 188.89761 * 22 20 13 38 38 H 1.09000 * 109.46843 * 308.89231 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6145 1.9783 -0.8484 5 6 3.5432 1.4438 -0.1079 6 1 4.1415 1.8583 0.6900 7 6 4.1546 0.9158 -1.2252 8 7 3.4261 0.4106 -2.1966 9 14 6.0178 0.9181 -1.3591 10 1 6.5576 -0.3366 -0.7763 11 1 6.4112 1.0094 -2.7882 12 1 6.5659 2.0833 -0.6195 13 7 1.6381 2.1040 1.2486 14 6 1.4827 3.5507 1.0513 15 6 0.9252 4.1841 2.3279 16 1 -0.0506 3.7531 2.5519 17 8 0.7934 5.5948 2.1424 18 6 1.8843 3.9087 3.4893 19 6 2.0667 2.3961 3.6427 20 6 2.5911 1.8146 2.3278 21 1 3.5554 2.2642 2.0910 22 6 2.7558 0.3001 2.4699 23 1 -0.3632 0.4332 0.9320 24 1 -0.3634 -1.0236 -0.0908 25 1 -0.3634 0.5905 -0.8410 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.8563 0.0395 -2.9828 29 1 2.4522 3.9921 0.8204 30 1 0.7950 3.7328 0.2253 31 1 0.4474 6.0625 2.9148 32 1 1.4700 4.3207 4.4095 33 1 2.8487 4.3728 3.2832 34 1 1.1087 1.9370 3.8872 35 1 2.7813 2.1941 4.4405 36 1 3.2753 -0.0924 1.5959 37 1 3.3355 0.0803 3.3664 38 1 1.7738 -0.1663 2.5489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307349617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:49 Heat of formation + Delta-G solvation = -65.730226 kcal Electronic energy + Delta-G solvation = -17416.427493 eV Core-core repulsion = 14872.008010 eV Total energy + Delta-G solvation = -2544.419483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64144 -37.94315 -35.56001 -33.69356 -32.76122 -31.81323 -28.56083 -27.39805 -25.34755 -23.79176 -22.42839 -21.31870 -20.68565 -18.36453 -18.07787 -16.95669 -16.17297 -15.96166 -15.37297 -15.21490 -15.06070 -14.40109 -14.03227 -13.86374 -13.66790 -13.27250 -13.07109 -12.93027 -12.73132 -12.64899 -12.40698 -12.23815 -12.12977 -11.58031 -11.55767 -11.43066 -11.22385 -11.11076 -10.69575 -10.63035 -10.21486 -8.88503 -8.03148 -6.20986 1.36039 1.38294 1.46192 2.40441 3.01984 3.18442 3.76454 3.89626 4.02011 4.14509 4.34274 4.54731 4.61509 4.66669 4.77529 4.80413 4.89791 4.93704 4.99030 5.04778 5.06840 5.11165 5.19939 5.26353 5.32644 5.46770 5.55116 5.62157 5.65267 5.76599 5.90069 6.15153 6.20778 6.41892 6.73599 6.95838 7.01093 7.47939 8.94768 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.010043 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.746602 B = 2787.423978 C = 3038.935530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.223 3.777 4 H -0.011 1.011 5 C -0.545 4.545 6 H 0.060 0.940 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.518 5.518 14 C 0.070 3.930 15 C 0.117 3.883 16 H 0.071 0.929 17 O -0.586 6.586 18 C -0.142 4.142 19 C -0.104 4.104 20 C 0.085 3.915 21 H 0.019 0.981 22 C -0.140 4.140 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.022 0.978 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.259 0.741 29 H 0.004 0.996 30 H 0.050 0.950 31 H 0.396 0.604 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 3.416 12.175 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.116 3.884 4 H 0.007 0.993 5 C -0.584 4.584 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.552 5.552 9 Si 0.768 3.232 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.243 5.243 14 C -0.059 4.059 15 C 0.058 3.942 16 H 0.089 0.911 17 O -0.394 6.394 18 C -0.180 4.180 19 C -0.142 4.142 20 C -0.024 4.024 21 H 0.037 0.963 22 C -0.197 4.197 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.246 0.754 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.347 3.008 11.552 12.704 hybrid contribution 1.737 0.495 -0.689 1.934 sum -2.609 3.503 10.863 11.708 Atomic orbital electron populations 1.21565 0.96965 0.99406 1.00372 1.21918 0.94172 0.98025 1.01848 1.19023 0.92064 0.91871 0.85417 0.99315 1.22068 0.93864 1.38893 1.03580 0.92199 1.25597 1.01491 0.95283 0.95575 1.70042 1.36193 1.40741 1.08210 0.85808 0.81916 0.78459 0.76980 1.19772 1.21308 1.20071 1.62318 1.47417 1.06842 1.07747 1.21709 0.97877 0.89423 0.96938 1.21649 0.98214 0.80471 0.93850 0.91141 1.86446 1.88778 1.19887 1.44334 1.22234 0.99644 0.97262 0.98842 1.21609 1.02263 0.94372 0.95958 1.21542 0.93163 0.96544 0.91141 0.96279 1.22090 1.01434 0.94896 1.01310 0.92309 0.93676 0.95837 0.90994 0.93187 0.93140 0.97717 0.93185 0.75415 0.88692 0.93171 0.90518 0.90055 0.92333 0.92096 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 9.73 71.98 0.70 -4.35 16 2 C -0.12 -5.70 4.93 30.60 0.15 -5.55 16 3 C 0.22 11.19 1.61 44.17 0.07 11.26 16 4 H -0.01 -0.65 7.65 -2.39 -0.02 -0.67 16 5 C -0.55 -29.33 6.32 25.60 0.16 -29.17 16 6 H 0.06 3.23 5.22 -2.91 -0.02 3.21 16 7 C 0.02 1.11 5.30 84.66 0.45 1.56 16 8 N -0.91 -52.76 11.47 21.45 0.25 -52.52 16 9 Si 0.94 43.95 29.54 68.60 2.03 45.97 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.52 -21.59 3.92 -850.39 -3.33 -24.92 16 14 C 0.07 2.84 4.97 86.33 0.43 3.27 16 15 C 0.12 3.56 3.63 30.65 0.11 3.67 16 16 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 17 O -0.59 -16.65 13.32 -148.98 -1.98 -18.63 16 18 C -0.14 -3.69 5.63 30.67 0.17 -3.52 16 19 C -0.10 -2.88 5.36 30.65 0.16 -2.72 16 20 C 0.08 3.16 1.82 44.94 0.08 3.24 16 21 H 0.02 0.84 5.89 -2.39 -0.01 0.82 16 22 C -0.14 -5.06 7.32 71.98 0.53 -4.53 16 23 H 0.06 2.19 7.88 -2.39 -0.02 2.17 16 24 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 3.18 3.70 -2.39 -0.01 3.17 16 27 H 0.05 2.69 6.16 -2.39 -0.01 2.67 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.05 2.17 7.90 -2.38 -0.02 2.15 16 31 H 0.40 6.63 9.08 -74.06 -0.67 5.96 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 2.53 4.83 -2.39 -0.01 2.51 16 37 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 38 H 0.06 2.11 7.09 -2.39 -0.02 2.10 16 Total: -1.00 -62.21 283.15 0.34 -61.87 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.37 Total: 15.06 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 3.02 Total: -26.83 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -3.09 Total: -77.44 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -1.98 Total: -18.63 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.21 0.34 -61.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307349617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.857 kcal (2) G-P(sol) polarization free energy of solvation -62.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds