Wall clock time and date at job start Sun Mar 29 2020 21:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47164 * 2 1 4 4 H 1.08997 * 109.47107 * 304.94678 * 3 2 1 5 5 C 1.50698 * 109.46971 * 184.94315 * 3 2 1 6 6 H 1.08003 * 120.00272 * 239.99595 * 5 3 2 7 7 C 1.37877 * 119.99766 * 60.00162 * 5 3 2 8 8 N 1.31513 * 120.00256 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99958 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47125 * 89.99681 * 9 7 5 11 11 H 1.48499 * 109.47152 * 210.00130 * 9 7 5 12 12 H 1.48500 * 109.47134 * 329.99902 * 9 7 5 13 13 N 1.46900 * 109.47203 * 64.94334 * 3 2 1 14 14 C 1.44272 * 110.99667 * 68.74005 * 13 3 2 15 15 C 1.54073 * 111.98036 * 219.30717 * 14 13 3 16 16 C 1.54293 * 112.28861 * 318.91349 * 15 14 13 17 17 C 1.50461 * 113.03486 * 318.30395 * 16 15 14 18 18 H 1.08996 * 109.57207 * 332.34336 * 17 16 15 19 19 O 1.42897 * 109.67602 * 212.02545 * 17 16 15 20 20 C 1.54512 * 108.85070 * 92.15116 * 17 16 15 21 21 C 1.45862 * 111.59364 * 282.80509 * 20 17 16 22 22 H 1.09005 * 109.47027 * 60.00494 * 1 2 3 23 23 H 1.09001 * 109.47630 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47589 * 299.99987 * 1 2 3 25 25 H 1.08995 * 109.46975 * 239.99603 * 2 1 3 26 26 H 1.09005 * 109.46797 * 120.00006 * 2 1 3 27 27 H 0.97000 * 120.00178 * 179.97438 * 8 7 5 28 28 H 1.08999 * 108.98422 * 339.95363 * 14 13 3 29 29 H 1.09002 * 108.97918 * 98.66796 * 14 13 3 30 30 H 1.09008 * 108.91714 * 198.19336 * 15 14 13 31 31 H 1.08994 * 108.84361 * 79.59368 * 15 14 13 32 32 H 1.08999 * 108.76792 * 197.38321 * 16 15 14 33 33 H 1.09006 * 108.67489 * 79.15856 * 16 15 14 34 34 H 0.96694 * 113.99980 * 60.56891 * 19 17 16 35 35 H 1.09003 * 109.05219 * 162.25939 * 20 17 16 36 36 H 1.09004 * 109.05532 * 43.35418 * 20 17 16 37 37 H 1.09004 * 108.79169 * 300.44407 * 21 20 17 38 38 H 1.08998 * 108.70336 * 182.15497 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6061 1.9812 -0.8423 5 6 3.5419 1.4442 -0.1224 6 1 4.1466 1.8890 0.6541 7 6 4.1443 0.8779 -1.2258 8 7 3.4081 0.3358 -2.1712 9 14 6.0061 0.8806 -1.3780 10 1 6.5555 -0.3506 -0.7555 11 1 6.3854 0.9213 -2.8132 12 1 6.5576 2.0734 -0.6863 13 7 1.6502 2.0997 1.2546 14 6 2.3666 1.5407 2.3753 15 6 1.4704 1.4005 3.6207 16 6 0.5465 2.6205 3.8172 17 6 1.2379 3.9309 3.5550 18 1 2.3041 3.8279 3.7564 19 8 0.6867 4.9432 4.3996 20 6 1.0259 4.3197 2.0747 21 6 1.8970 3.5554 1.1889 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8932 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8318 -0.0622 -2.9477 28 1 2.7457 0.5569 2.0987 29 1 3.2093 2.1888 2.6161 30 1 2.1037 1.2913 4.5012 31 1 0.8569 0.5060 3.5140 32 1 0.1760 2.6183 4.8423 33 1 -0.3014 2.5292 3.1382 34 1 0.7847 4.7633 5.3446 35 1 1.2373 5.3820 1.9521 36 1 -0.0125 4.1311 1.8024 37 1 2.9340 3.7486 1.4637 38 1 1.7370 3.8929 0.1649 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307705289.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:59 Heat of formation + Delta-G solvation = -58.993815 kcal Electronic energy + Delta-G solvation = -17207.575060 eV Core-core repulsion = 14663.447689 eV Total energy + Delta-G solvation = -2544.127370 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04823 -36.66600 -33.93851 -32.06084 -31.77244 -30.49261 -26.82860 -25.02526 -24.05473 -22.82277 -20.29370 -19.92694 -18.65119 -16.96828 -16.17491 -15.59773 -14.92046 -14.51925 -14.20277 -13.62834 -13.13533 -13.07234 -12.73833 -12.52032 -12.14949 -11.74151 -11.46235 -11.14308 -10.97185 -10.84820 -10.79041 -10.59707 -10.30321 -10.14118 -9.91497 -9.85308 -9.61834 -9.50660 -9.35626 -9.08253 -8.37575 -7.18245 -6.00532 -4.13856 3.24941 3.32663 3.35176 4.37887 4.45199 4.90694 5.13487 5.23705 5.42819 5.51818 5.72598 5.77401 5.85108 6.04105 6.14038 6.29391 6.35388 6.43970 6.49606 6.53198 6.63511 6.67836 6.68847 6.73281 6.84838 6.86493 7.14713 7.18995 7.38452 7.60591 7.76266 7.84491 8.02401 8.15250 8.32186 8.50670 8.97119 9.54082 10.98803 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.008732 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.459093 B = 3205.852996 C = 3606.696994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.524 5.524 14 C 0.062 3.938 15 C -0.109 4.109 16 C -0.135 4.135 17 C 0.108 3.892 18 H 0.049 0.951 19 O -0.575 6.575 20 C -0.099 4.099 21 C 0.062 3.938 22 H 0.038 0.962 23 H 0.024 0.976 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.370 0.630 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.755 3.147 9.395 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.247 5.247 14 C -0.068 4.068 15 C -0.148 4.148 16 C -0.173 4.173 17 C 0.049 3.951 18 H 0.067 0.933 19 O -0.380 6.380 20 C -0.137 4.137 21 C -0.066 4.066 22 H 0.057 0.943 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.110 0.890 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.216 0.784 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.405 3.234 8.675 10.252 hybrid contribution 2.143 -0.261 0.255 2.174 sum -2.262 2.973 8.930 9.680 Atomic orbital electron populations 1.21702 0.98871 0.98355 1.00566 1.21600 0.92271 0.99132 1.01809 1.19404 0.92991 0.91204 0.85617 0.94420 1.21797 0.92764 1.38117 1.05574 0.92693 1.24921 0.97779 0.95056 0.95696 1.69872 1.34770 1.38233 1.09432 0.86689 0.86276 0.78351 0.77243 1.20722 1.21196 1.20099 1.61979 1.56173 1.01525 1.05063 1.21744 0.93450 1.00920 0.90645 1.21979 0.97969 0.97250 0.97570 1.21898 1.00211 0.94773 1.00397 1.21617 0.95762 0.86627 0.91064 0.93261 1.86497 1.83459 1.48198 1.19864 1.20563 1.01758 0.99426 0.91990 1.20713 0.96860 0.90039 0.99009 0.94295 0.95696 0.93332 0.88989 0.94956 0.92885 0.90648 0.95606 0.93435 0.92282 0.93357 0.90930 0.78361 0.91939 0.91351 0.95090 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 37.16 0.36 -2.41 16 2 C -0.11 -2.55 5.18 -26.74 -0.14 -2.69 16 3 C 0.21 5.13 1.64 -68.87 -0.11 5.01 16 4 H 0.04 1.01 7.76 -51.93 -0.40 0.61 16 5 C -0.54 -14.18 7.13 -34.44 -0.25 -14.43 16 6 H 0.05 1.45 6.68 -52.48 -0.35 1.10 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.52 11.29 55.43 0.63 -23.89 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.52 -10.64 3.63 -232.94 -0.85 -11.49 16 14 C 0.06 1.18 3.67 -4.67 -0.02 1.16 16 15 C -0.11 -1.70 6.15 -25.49 -0.16 -1.85 16 16 C -0.13 -1.97 5.16 -27.32 -0.14 -2.11 16 17 C 0.11 1.62 3.14 -27.21 -0.09 1.53 16 18 H 0.05 0.76 7.15 -51.93 -0.37 0.39 16 19 O -0.57 -8.04 13.28 -35.23 -0.47 -8.51 16 20 C -0.10 -1.64 5.19 -29.32 -0.15 -1.79 16 21 C 0.06 1.18 4.45 -6.71 -0.03 1.15 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.94 7.75 -51.93 -0.40 0.54 16 25 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 26 H 0.03 0.74 6.43 -51.93 -0.33 0.40 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.08 1.59 5.52 -51.93 -0.29 1.31 16 29 H 0.03 0.50 6.18 -51.93 -0.32 0.18 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.60 7.87 -51.93 -0.41 0.20 16 33 H 0.07 1.17 7.38 -51.93 -0.38 0.78 16 34 H 0.37 3.52 8.94 45.56 0.41 3.93 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.15 7.59 -51.93 -0.39 0.75 16 37 H 0.03 0.62 7.10 -51.93 -0.37 0.25 16 38 H 0.07 1.36 7.57 -51.93 -0.39 0.97 16 LS Contribution 284.75 15.07 4.29 4.29 Total: -1.00 -27.47 284.75 -7.79 -35.26 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.57 Total: 3.15 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.81 Total: -14.69 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.22 Total: -35.38 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.47 Total: -8.51 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.47 -7.79 -35.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307705289.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.730 kcal (2) G-P(sol) polarization free energy of solvation -27.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds