Wall clock time and date at job start Sun Mar 29 2020 21:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47164 * 2 1 4 4 H 1.08997 * 109.47107 * 304.94678 * 3 2 1 5 5 C 1.50698 * 109.46971 * 184.94315 * 3 2 1 6 6 H 1.08003 * 120.00272 * 239.99595 * 5 3 2 7 7 C 1.37877 * 119.99766 * 60.00162 * 5 3 2 8 8 N 1.31513 * 120.00256 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99958 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47125 * 89.99681 * 9 7 5 11 11 H 1.48499 * 109.47152 * 210.00130 * 9 7 5 12 12 H 1.48500 * 109.47134 * 329.99902 * 9 7 5 13 13 N 1.46900 * 109.47203 * 64.94334 * 3 2 1 14 14 C 1.44272 * 110.99667 * 68.74005 * 13 3 2 15 15 C 1.54073 * 111.98036 * 219.30717 * 14 13 3 16 16 C 1.54293 * 112.28861 * 318.91349 * 15 14 13 17 17 C 1.50461 * 113.03486 * 318.30395 * 16 15 14 18 18 H 1.08996 * 109.57207 * 332.34336 * 17 16 15 19 19 O 1.42897 * 109.67602 * 212.02545 * 17 16 15 20 20 C 1.54512 * 108.85070 * 92.15116 * 17 16 15 21 21 C 1.45862 * 111.59364 * 282.80509 * 20 17 16 22 22 H 1.09005 * 109.47027 * 60.00494 * 1 2 3 23 23 H 1.09001 * 109.47630 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47589 * 299.99987 * 1 2 3 25 25 H 1.08995 * 109.46975 * 239.99603 * 2 1 3 26 26 H 1.09005 * 109.46797 * 120.00006 * 2 1 3 27 27 H 0.97000 * 120.00178 * 179.97438 * 8 7 5 28 28 H 1.08999 * 108.98422 * 339.95363 * 14 13 3 29 29 H 1.09002 * 108.97918 * 98.66796 * 14 13 3 30 30 H 1.09008 * 108.91714 * 198.19336 * 15 14 13 31 31 H 1.08994 * 108.84361 * 79.59368 * 15 14 13 32 32 H 1.08999 * 108.76792 * 197.38321 * 16 15 14 33 33 H 1.09006 * 108.67489 * 79.15856 * 16 15 14 34 34 H 0.96694 * 113.99980 * 60.56891 * 19 17 16 35 35 H 1.09003 * 109.05219 * 162.25939 * 20 17 16 36 36 H 1.09004 * 109.05532 * 43.35418 * 20 17 16 37 37 H 1.09004 * 108.79169 * 300.44407 * 21 20 17 38 38 H 1.08998 * 108.70336 * 182.15497 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6061 1.9812 -0.8423 5 6 3.5419 1.4442 -0.1224 6 1 4.1466 1.8890 0.6541 7 6 4.1443 0.8779 -1.2258 8 7 3.4081 0.3358 -2.1712 9 14 6.0061 0.8806 -1.3780 10 1 6.5555 -0.3506 -0.7555 11 1 6.3854 0.9213 -2.8132 12 1 6.5576 2.0734 -0.6863 13 7 1.6502 2.0997 1.2546 14 6 2.3666 1.5407 2.3753 15 6 1.4704 1.4005 3.6207 16 6 0.5465 2.6205 3.8172 17 6 1.2379 3.9309 3.5550 18 1 2.3041 3.8279 3.7564 19 8 0.6867 4.9432 4.3996 20 6 1.0259 4.3197 2.0747 21 6 1.8970 3.5554 1.1889 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8932 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8318 -0.0622 -2.9477 28 1 2.7457 0.5569 2.0987 29 1 3.2093 2.1888 2.6161 30 1 2.1037 1.2913 4.5012 31 1 0.8569 0.5060 3.5140 32 1 0.1760 2.6183 4.8423 33 1 -0.3014 2.5292 3.1382 34 1 0.7847 4.7633 5.3446 35 1 1.2373 5.3820 1.9521 36 1 -0.0125 4.1311 1.8024 37 1 2.9340 3.7486 1.4637 38 1 1.7370 3.8929 0.1649 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307705289.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:58 Heat of formation + Delta-G solvation = -77.476865 kcal Electronic energy + Delta-G solvation = -17208.376545 eV Core-core repulsion = 14663.447689 eV Total energy + Delta-G solvation = -2544.928856 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51329 -38.06436 -35.55639 -33.66418 -33.42232 -32.05947 -28.62925 -26.65020 -25.44949 -24.60181 -21.91224 -21.32251 -20.32055 -18.25278 -18.01124 -17.24684 -16.49054 -16.17782 -15.59431 -15.18848 -14.85195 -14.42369 -14.26242 -14.00119 -13.66248 -13.36623 -13.24981 -12.97733 -12.63749 -12.48255 -12.39531 -12.13145 -11.86804 -11.71169 -11.46362 -11.44638 -11.26783 -11.13424 -10.93758 -10.66128 -10.42407 -8.93962 -8.03111 -6.25531 1.36161 1.38591 1.46600 2.39568 3.15218 3.32323 3.38692 3.90809 4.13600 4.22890 4.37711 4.44384 4.53008 4.55539 4.66192 4.74029 4.81155 4.92979 4.97204 5.04048 5.17368 5.24591 5.29951 5.32684 5.32958 5.43354 5.46790 5.51219 5.57169 5.65306 5.81691 6.10774 6.21736 6.42125 6.72868 6.96525 6.98920 7.45769 8.91896 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.008732 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.459093 B = 3205.852996 C = 3606.696994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.517 5.517 14 C 0.063 3.937 15 C -0.101 4.101 16 C -0.129 4.129 17 C 0.116 3.884 18 H 0.047 0.953 19 O -0.582 6.582 20 C -0.097 4.097 21 C 0.069 3.931 22 H 0.030 0.970 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.051 0.949 29 H 0.018 0.982 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.392 0.608 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 3.383 11.369 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.590 4.590 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.240 5.240 14 C -0.066 4.066 15 C -0.139 4.139 16 C -0.167 4.167 17 C 0.057 3.943 18 H 0.065 0.935 19 O -0.391 6.391 20 C -0.135 4.135 21 C -0.060 4.060 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.242 0.758 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.648 3.476 10.683 12.157 hybrid contribution 2.221 -0.296 -0.334 2.265 sum -2.427 3.180 10.348 11.095 Atomic orbital electron populations 1.21562 0.96364 0.99707 1.00624 1.21430 0.94453 0.98101 1.00237 1.19179 0.91709 0.91590 0.86260 0.97938 1.22026 0.94012 1.37620 1.05302 0.93334 1.25608 1.01651 0.95005 0.95600 1.69998 1.36203 1.38929 1.09812 0.85769 0.81657 0.78342 0.77126 1.20209 1.20993 1.19901 1.62020 1.55961 1.02057 1.03992 1.21772 0.94176 0.99126 0.91529 1.21898 0.97884 0.97940 0.96220 1.21840 0.99206 0.93775 1.01895 1.21383 0.95737 0.87076 0.90094 0.93508 1.86449 1.83259 1.47773 1.21599 1.20452 1.00737 0.99281 0.93016 1.20686 0.96908 0.89528 0.98828 0.95048 0.93677 0.92347 0.92028 0.94925 0.92949 0.93047 0.96325 0.91025 0.92102 0.90322 0.92364 0.75806 0.91162 0.91543 0.96246 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.80 71.98 0.71 -4.27 16 2 C -0.10 -4.89 5.18 30.59 0.16 -4.73 16 3 C 0.22 10.80 1.64 44.17 0.07 10.88 16 4 H 0.00 0.15 7.76 -2.39 -0.02 0.13 16 5 C -0.55 -29.36 7.13 25.60 0.18 -29.17 16 6 H 0.05 2.60 6.68 -2.91 -0.02 2.58 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -51.63 11.29 21.45 0.24 -51.38 16 9 Si 0.94 43.30 29.54 68.60 2.03 45.33 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.52 -21.08 3.63 -890.88 -3.24 -24.31 16 14 C 0.06 2.37 3.67 87.16 0.32 2.69 16 15 C -0.10 -2.87 6.15 31.40 0.19 -2.68 16 16 C -0.13 -3.36 5.16 30.21 0.16 -3.20 16 17 C 0.12 3.18 3.14 30.29 0.10 3.27 16 18 H 0.05 1.33 7.15 -2.39 -0.02 1.31 16 19 O -0.58 -14.30 13.28 -148.98 -1.98 -16.28 16 20 C -0.10 -3.08 5.19 28.92 0.15 -2.93 16 21 C 0.07 2.63 4.45 83.94 0.37 3.01 16 22 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 2.19 7.75 -2.39 -0.02 2.17 16 25 H 0.06 3.30 5.95 -2.39 -0.01 3.28 16 26 H 0.03 1.50 6.43 -2.38 -0.02 1.48 16 27 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.05 2.17 5.52 -2.39 -0.01 2.15 16 29 H 0.02 0.71 6.18 -2.39 -0.01 0.70 16 30 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.61 7.87 -2.39 -0.02 1.59 16 33 H 0.06 1.71 7.38 -2.38 -0.02 1.69 16 34 H 0.39 5.84 8.94 -74.06 -0.66 5.18 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.15 7.59 -2.39 -0.02 2.13 16 37 H 0.02 0.78 7.10 -2.39 -0.02 0.76 16 38 H 0.05 2.05 7.57 -2.39 -0.02 2.03 16 Total: -1.00 -59.06 284.75 0.28 -58.78 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.37 Total: 13.40 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 2.85 Total: -25.53 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -2.99 Total: -75.70 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -1.98 Total: -16.28 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -59.06 0.28 -58.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307705289.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.697 kcal (2) G-P(sol) polarization free energy of solvation -59.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds