Wall clock time and date at job start Sun Mar 29 2020 21:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47014 * 2 1 4 4 H 1.09000 * 109.47047 * 186.69433 * 3 2 1 5 5 C 1.50688 * 109.47263 * 306.69856 * 3 2 1 6 6 H 1.08006 * 120.00181 * 120.27180 * 5 3 2 7 7 C 1.37880 * 120.00348 * 299.99955 * 5 3 2 8 8 N 1.31517 * 119.99378 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00363 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47113 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47042 * 119.99917 * 9 7 5 12 12 H 1.48501 * 109.47376 * 240.00025 * 9 7 5 13 13 N 1.46902 * 109.46731 * 66.69970 * 3 2 1 14 14 C 1.47799 * 111.00120 * 49.23270 * 13 3 2 15 15 C 1.45870 * 112.91577 * 153.86918 * 14 13 3 16 16 C 1.54499 * 111.59429 * 61.32316 * 15 14 13 17 17 C 1.50464 * 108.85256 * 282.80536 * 16 15 14 18 18 H 1.08995 * 108.77091 * 331.24058 * 17 16 15 19 19 O 1.42902 * 108.77104 * 213.06785 * 17 16 15 20 20 C 1.54298 * 113.02971 * 92.15541 * 17 16 15 21 21 C 1.44265 * 111.00055 * 287.24388 * 13 3 2 22 22 H 1.09007 * 109.47072 * 287.88525 * 1 2 3 23 23 H 1.08991 * 109.47205 * 47.88365 * 1 2 3 24 24 H 1.09002 * 109.47245 * 167.88879 * 1 2 3 25 25 H 1.08997 * 109.47369 * 240.00505 * 2 1 3 26 26 H 1.09006 * 109.47269 * 119.99903 * 2 1 3 27 27 H 0.97002 * 119.99629 * 179.97438 * 8 7 5 28 28 H 1.09004 * 108.78879 * 274.74632 * 14 13 3 29 29 H 1.08997 * 108.79618 * 33.08959 * 14 13 3 30 30 H 1.08999 * 109.05222 * 181.86693 * 15 14 13 31 31 H 1.08998 * 109.05449 * 300.84456 * 15 14 13 32 32 H 1.08997 * 109.57578 * 42.61626 * 16 15 14 33 33 H 1.09002 * 109.57482 * 162.99831 * 16 15 14 34 34 H 0.96704 * 113.99524 * 60.00495 * 19 17 16 35 35 H 1.08998 * 108.91692 * 79.02948 * 20 17 16 36 36 H 1.09004 * 108.91262 * 197.57615 * 20 17 16 37 37 H 1.09000 * 108.98243 * 339.95740 * 21 13 3 38 38 H 1.08997 * 108.97810 * 98.66929 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1234 1.4449 -0.1198 5 6 1.4069 2.1991 -1.1391 6 1 0.8062 3.0740 -0.9386 7 6 1.5993 1.7779 -2.4378 8 7 2.3348 0.7155 -2.6823 9 14 0.8140 2.7154 -3.8498 10 1 0.0410 3.8638 -3.3123 11 1 1.8738 3.2161 -4.7617 12 1 -0.0967 1.8120 -4.5981 13 7 1.6866 2.0867 1.2721 14 6 2.0690 1.2378 2.4199 15 6 2.3165 2.0045 3.6359 16 6 1.0550 2.7717 4.0911 17 6 0.8853 3.9878 3.2214 18 1 1.8670 4.3112 2.8754 19 8 0.3085 5.0355 4.0035 20 6 -0.0141 3.7315 1.9942 21 6 0.2734 2.3699 1.3332 22 1 -0.3633 0.3156 0.9781 23 1 -0.3633 0.6891 -0.7622 24 1 -0.3634 -1.0048 -0.2156 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.4698 0.4189 -3.5960 28 1 1.2672 0.5246 2.6116 29 1 2.9741 0.6873 2.1634 30 1 2.6246 1.3236 4.4294 31 1 3.1183 2.7189 3.4491 32 1 0.1809 2.1279 3.9931 33 1 1.1698 3.0792 5.1305 34 1 0.8416 5.2952 4.7673 35 1 -1.0573 3.7585 2.3088 36 1 0.1531 4.5219 1.2624 37 1 -0.1314 2.3747 0.3211 38 1 -0.2207 1.5860 1.9071 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307705292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:00 Heat of formation + Delta-G solvation = -43.956908 kcal Electronic energy + Delta-G solvation = -17387.318982 eV Core-core repulsion = 14843.843661 eV Total energy + Delta-G solvation = -2543.475321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.28926 -36.86087 -34.18897 -32.03277 -31.41214 -29.94636 -27.08822 -25.10459 -24.76936 -22.55076 -20.68342 -19.33707 -18.75486 -17.03071 -16.15096 -15.65140 -14.82314 -14.48610 -14.05314 -13.70288 -13.41007 -13.17949 -12.65399 -12.47000 -12.06750 -12.00775 -11.33716 -11.16082 -10.93111 -10.77183 -10.76458 -10.54523 -10.29217 -10.07489 -10.04290 -9.72851 -9.59047 -9.49812 -9.37723 -8.78786 -8.40911 -7.09137 -6.03861 -4.06116 3.27920 3.36777 3.40694 4.39027 4.54666 4.88724 5.17808 5.27658 5.32703 5.49692 5.73483 5.78165 5.89402 6.01765 6.11783 6.20387 6.29424 6.41466 6.44398 6.49104 6.56729 6.59311 6.63255 6.73061 6.86027 6.91839 6.98858 7.31891 7.42809 7.63685 7.68748 7.80530 7.95162 8.12394 8.42773 8.60296 8.99708 9.57252 11.02968 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.009122 C = 0.007906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.764592 B = 3068.652122 C = 3540.622325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.146 4.146 3 C 0.213 3.787 4 H 0.040 0.960 5 C -0.503 4.503 6 H 0.066 0.934 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.523 5.523 14 C 0.051 3.949 15 C -0.110 4.110 16 C -0.143 4.143 17 C 0.114 3.886 18 H 0.058 0.942 19 O -0.582 6.582 20 C -0.102 4.102 21 C 0.050 3.950 22 H 0.037 0.963 23 H 0.070 0.930 24 H 0.019 0.981 25 H 0.089 0.911 26 H 0.017 0.983 27 H 0.259 0.741 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.368 0.632 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 1.824 10.405 10.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.058 0.942 5 C -0.542 4.542 6 H 0.084 0.916 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.246 5.246 14 C -0.077 4.077 15 C -0.148 4.148 16 C -0.181 4.181 17 C 0.056 3.944 18 H 0.076 0.924 19 O -0.387 6.387 20 C -0.140 4.140 21 C -0.079 4.079 22 H 0.056 0.944 23 H 0.089 0.911 24 H 0.038 0.962 25 H 0.107 0.893 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.214 0.786 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.914 2.115 9.799 10.206 hybrid contribution -0.307 -0.422 -0.454 0.692 sum -2.221 1.693 9.345 9.753 Atomic orbital electron populations 1.22044 0.97988 0.99308 1.00760 1.22132 0.94949 1.01096 1.00336 1.19444 0.96447 0.88983 0.84432 0.94219 1.21155 1.31069 1.11760 0.90196 0.91572 1.24894 0.95297 0.95045 0.98660 1.69906 1.38879 1.24005 1.19951 0.86561 0.79171 0.79982 0.82483 1.19659 1.21067 1.21161 1.61889 1.15620 1.44115 1.02982 1.20921 1.00168 0.94594 0.91999 1.20583 0.97492 0.99539 0.97205 1.22072 0.98969 0.98597 0.98415 1.21645 0.96987 0.85396 0.90389 0.92441 1.86512 1.52036 1.56760 1.43430 1.21974 0.97774 0.99463 0.94830 1.22313 0.90394 0.93170 1.01990 0.94449 0.91068 0.96181 0.89278 0.96406 0.93066 0.95459 0.92111 0.92552 0.91617 0.91778 0.92327 0.78612 0.92615 0.91861 0.87896 0.95446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.44 37.16 0.31 -2.75 16 2 C -0.15 -3.35 5.02 -26.73 -0.13 -3.48 16 3 C 0.21 5.12 2.41 -68.87 -0.17 4.95 16 4 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.50 -13.02 5.90 -34.45 -0.20 -13.23 16 6 H 0.07 1.73 6.34 -52.48 -0.33 1.40 16 7 C 0.06 1.67 5.26 -17.82 -0.09 1.57 16 8 N -0.89 -24.51 11.40 55.43 0.63 -23.88 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.82 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.52 -10.73 4.33 -232.95 -1.01 -11.74 16 14 C 0.05 0.91 3.54 -6.70 -0.02 0.88 16 15 C -0.11 -1.61 5.53 -29.32 -0.16 -1.77 16 16 C -0.14 -2.02 5.29 -27.21 -0.14 -2.16 16 17 C 0.11 1.81 3.06 -27.32 -0.08 1.72 16 18 H 0.06 0.97 7.38 -51.93 -0.38 0.59 16 19 O -0.58 -8.63 13.21 -35.23 -0.47 -9.10 16 20 C -0.10 -1.82 5.78 -25.50 -0.15 -1.96 16 21 C 0.05 0.98 2.95 -4.68 -0.01 0.96 16 22 H 0.04 0.73 4.78 -51.92 -0.25 0.48 16 23 H 0.07 1.64 6.01 -51.93 -0.31 1.33 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 2.31 6.28 -51.93 -0.33 1.98 16 26 H 0.02 0.37 6.18 -51.93 -0.32 0.05 16 27 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 28 H 0.03 0.49 6.53 -51.93 -0.34 0.15 16 29 H 0.06 1.11 7.32 -51.93 -0.38 0.73 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.98 7.58 -51.93 -0.39 0.59 16 32 H 0.06 0.96 7.15 -51.93 -0.37 0.59 16 33 H 0.06 0.70 7.85 -51.93 -0.41 0.29 16 34 H 0.37 3.75 8.91 45.56 0.41 4.15 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.10 2.23 4.00 -51.93 -0.21 2.03 16 38 H 0.03 0.52 4.55 -51.93 -0.24 0.28 16 LS Contribution 272.85 15.07 4.11 4.11 Total: -1.00 -27.47 272.85 -7.71 -35.18 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.10 Total: 4.87 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -0.86 Total: -15.27 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.38 Total: -35.62 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.47 Total: -9.10 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.47 -7.71 -35.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307705292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.778 kcal (2) G-P(sol) polarization free energy of solvation -27.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds