Wall clock time and date at job start Sun Mar 29 2020 21:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47014 * 2 1 4 4 H 1.09000 * 109.47047 * 186.69433 * 3 2 1 5 5 C 1.50688 * 109.47263 * 306.69856 * 3 2 1 6 6 H 1.08006 * 120.00181 * 120.27180 * 5 3 2 7 7 C 1.37880 * 120.00348 * 299.99955 * 5 3 2 8 8 N 1.31517 * 119.99378 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00363 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47113 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47042 * 119.99917 * 9 7 5 12 12 H 1.48501 * 109.47376 * 240.00025 * 9 7 5 13 13 N 1.46902 * 109.46731 * 66.69970 * 3 2 1 14 14 C 1.47799 * 111.00120 * 49.23270 * 13 3 2 15 15 C 1.45870 * 112.91577 * 153.86918 * 14 13 3 16 16 C 1.54499 * 111.59429 * 61.32316 * 15 14 13 17 17 C 1.50464 * 108.85256 * 282.80536 * 16 15 14 18 18 H 1.08995 * 108.77091 * 331.24058 * 17 16 15 19 19 O 1.42902 * 108.77104 * 213.06785 * 17 16 15 20 20 C 1.54298 * 113.02971 * 92.15541 * 17 16 15 21 21 C 1.44265 * 111.00055 * 287.24388 * 13 3 2 22 22 H 1.09007 * 109.47072 * 287.88525 * 1 2 3 23 23 H 1.08991 * 109.47205 * 47.88365 * 1 2 3 24 24 H 1.09002 * 109.47245 * 167.88879 * 1 2 3 25 25 H 1.08997 * 109.47369 * 240.00505 * 2 1 3 26 26 H 1.09006 * 109.47269 * 119.99903 * 2 1 3 27 27 H 0.97002 * 119.99629 * 179.97438 * 8 7 5 28 28 H 1.09004 * 108.78879 * 274.74632 * 14 13 3 29 29 H 1.08997 * 108.79618 * 33.08959 * 14 13 3 30 30 H 1.08999 * 109.05222 * 181.86693 * 15 14 13 31 31 H 1.08998 * 109.05449 * 300.84456 * 15 14 13 32 32 H 1.08997 * 109.57578 * 42.61626 * 16 15 14 33 33 H 1.09002 * 109.57482 * 162.99831 * 16 15 14 34 34 H 0.96704 * 113.99524 * 60.00495 * 19 17 16 35 35 H 1.08998 * 108.91692 * 79.02948 * 20 17 16 36 36 H 1.09004 * 108.91262 * 197.57615 * 20 17 16 37 37 H 1.09000 * 108.98243 * 339.95740 * 21 13 3 38 38 H 1.08997 * 108.97810 * 98.66929 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1234 1.4449 -0.1198 5 6 1.4069 2.1991 -1.1391 6 1 0.8062 3.0740 -0.9386 7 6 1.5993 1.7779 -2.4378 8 7 2.3348 0.7155 -2.6823 9 14 0.8140 2.7154 -3.8498 10 1 0.0410 3.8638 -3.3123 11 1 1.8738 3.2161 -4.7617 12 1 -0.0967 1.8120 -4.5981 13 7 1.6866 2.0867 1.2721 14 6 2.0690 1.2378 2.4199 15 6 2.3165 2.0045 3.6359 16 6 1.0550 2.7717 4.0911 17 6 0.8853 3.9878 3.2214 18 1 1.8670 4.3112 2.8754 19 8 0.3085 5.0355 4.0035 20 6 -0.0141 3.7315 1.9942 21 6 0.2734 2.3699 1.3332 22 1 -0.3633 0.3156 0.9781 23 1 -0.3633 0.6891 -0.7622 24 1 -0.3634 -1.0048 -0.2156 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.4698 0.4189 -3.5960 28 1 1.2672 0.5246 2.6116 29 1 2.9741 0.6873 2.1634 30 1 2.6246 1.3236 4.4294 31 1 3.1183 2.7189 3.4491 32 1 0.1809 2.1279 3.9931 33 1 1.1698 3.0792 5.1305 34 1 0.8416 5.2952 4.7673 35 1 -1.0573 3.7585 2.3088 36 1 0.1531 4.5219 1.2624 37 1 -0.1314 2.3747 0.3211 38 1 -0.2207 1.5860 1.9071 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307705292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:00 Heat of formation + Delta-G solvation = -63.383761 kcal Electronic energy + Delta-G solvation = -17388.161393 eV Core-core repulsion = 14843.843661 eV Total energy + Delta-G solvation = -2544.317733 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79359 -38.24075 -35.72053 -33.78798 -32.90150 -31.58361 -28.86329 -26.82070 -26.22605 -24.16677 -22.22556 -20.81108 -20.36537 -18.25141 -18.06027 -17.31028 -16.25049 -16.18373 -15.63204 -15.20169 -15.12515 -14.59428 -14.06996 -14.00107 -13.72798 -13.50704 -13.02812 -12.79791 -12.69923 -12.42849 -12.25175 -12.16393 -12.05178 -11.70648 -11.34368 -11.30639 -11.25837 -11.11389 -10.78129 -10.62624 -10.44974 -8.74504 -8.07895 -6.15137 1.39758 1.43703 1.53371 2.43538 3.21473 3.37461 3.41440 3.98153 4.05754 4.21565 4.31673 4.40715 4.56014 4.58111 4.66511 4.69494 4.80758 4.84100 4.92214 5.07155 5.10608 5.20339 5.24250 5.28173 5.37285 5.42226 5.49146 5.53071 5.60252 5.72351 5.78359 5.86510 6.23437 6.58205 6.83038 7.01144 7.01481 7.51541 8.98216 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032148 B = 0.009122 C = 0.007906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.764592 B = 3068.652122 C = 3540.622325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.530 5.530 14 C 0.052 3.948 15 C -0.107 4.107 16 C -0.135 4.135 17 C 0.120 3.880 18 H 0.044 0.956 19 O -0.592 6.592 20 C -0.101 4.101 21 C 0.058 3.942 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.031 0.969 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.259 0.741 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.390 0.610 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 2.185 12.255 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.556 5.556 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.253 5.253 14 C -0.076 4.076 15 C -0.145 4.145 16 C -0.173 4.173 17 C 0.062 3.938 18 H 0.062 0.938 19 O -0.400 6.400 20 C -0.140 4.140 21 C -0.071 4.071 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.240 0.760 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.696 2.490 11.678 12.241 hybrid contribution -0.046 -0.509 -0.968 1.095 sum -2.743 1.981 10.710 11.232 Atomic orbital electron populations 1.21911 0.96476 0.99515 1.01121 1.21979 0.96167 1.00102 0.99495 1.19171 0.93991 0.89794 0.85927 0.98052 1.21345 1.30534 1.11472 0.91027 0.92212 1.25544 0.95882 0.95819 1.00795 1.70031 1.40097 1.25231 1.20206 0.85688 0.78310 0.78938 0.79834 1.19250 1.21122 1.20853 1.61832 1.16482 1.44503 1.02489 1.21021 0.99652 0.94791 0.92092 1.20546 0.97804 0.99780 0.96331 1.22013 0.98248 0.97336 0.99695 1.21438 0.95485 0.86678 0.90193 0.93791 1.86457 1.52691 1.56438 1.44443 1.21895 0.98927 0.97640 0.95528 1.22166 0.89477 0.94542 1.00886 0.92564 0.93170 0.94980 0.92427 0.94842 0.93204 0.95165 0.93125 0.89634 0.91962 0.92226 0.89216 0.76036 0.91662 0.93712 0.90467 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 8.44 71.98 0.61 -4.98 16 2 C -0.14 -6.38 5.02 30.60 0.15 -6.22 16 3 C 0.22 10.70 2.41 44.17 0.11 10.80 16 4 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 5 C -0.51 -26.68 5.90 25.60 0.15 -26.53 16 6 H 0.06 3.18 6.34 -2.91 -0.02 3.16 16 7 C 0.02 1.00 5.26 84.65 0.45 1.45 16 8 N -0.92 -51.74 11.40 21.45 0.24 -51.50 16 9 Si 0.95 43.33 29.54 68.60 2.03 45.35 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.53 -21.59 4.33 -890.91 -3.86 -25.46 16 14 C 0.05 1.76 3.54 83.94 0.30 2.06 16 15 C -0.11 -2.81 5.53 28.92 0.16 -2.65 16 16 C -0.14 -3.34 5.29 30.28 0.16 -3.18 16 17 C 0.12 3.54 3.06 30.21 0.09 3.63 16 18 H 0.04 1.42 7.38 -2.39 -0.02 1.40 16 19 O -0.59 -15.78 13.21 -148.98 -1.97 -17.74 16 20 C -0.10 -3.50 5.78 31.39 0.18 -3.31 16 21 C 0.06 2.21 2.95 87.15 0.26 2.47 16 22 H 0.06 2.11 4.78 -2.38 -0.01 2.10 16 23 H 0.05 2.31 6.01 -2.39 -0.01 2.30 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 3.05 6.28 -2.39 -0.01 3.03 16 26 H 0.03 1.41 6.18 -2.38 -0.01 1.39 16 27 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.03 1.01 6.53 -2.38 -0.02 0.99 16 29 H 0.05 1.80 7.32 -2.39 -0.02 1.78 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 32 H 0.06 1.56 7.15 -2.39 -0.02 1.54 16 33 H 0.09 1.70 7.85 -2.39 -0.02 1.68 16 34 H 0.39 6.53 8.91 -74.05 -0.66 5.87 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 3.36 4.00 -2.39 -0.01 3.35 16 38 H 0.04 1.35 4.55 -2.39 -0.01 1.34 16 Total: -1.00 -59.21 272.85 -0.55 -59.77 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.39 Total: 16.04 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 2.61 Total: -26.47 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -3.62 Total: -76.95 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -1.97 Total: -17.74 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -59.21 -0.55 -59.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307705292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.617 kcal (2) G-P(sol) polarization free energy of solvation -59.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds