Wall clock time and date at job start Sun Mar 29 2020 21:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46979 * 2 1 4 4 H 1.09004 * 109.46813 * 181.80858 * 3 2 1 5 5 C 1.50703 * 109.47198 * 301.81035 * 3 2 1 6 6 H 1.08001 * 119.99530 * 120.00586 * 5 3 2 7 7 C 1.37869 * 120.00079 * 299.99970 * 5 3 2 8 8 N 1.31518 * 120.00140 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00147 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46983 * 90.00250 * 9 7 5 11 11 H 1.48495 * 109.47185 * 210.00118 * 9 7 5 12 12 H 1.48501 * 109.46840 * 330.00562 * 9 7 5 13 13 N 1.46897 * 109.47193 * 61.81267 * 3 2 1 14 14 C 1.46899 * 111.00018 * 81.11224 * 13 3 2 15 15 C 1.53001 * 109.47467 * 185.90671 * 14 13 3 16 16 C 1.52993 * 113.00420 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47410 * 180.02562 * 16 15 14 18 18 C 1.54042 * 113.81553 * 48.17162 * 15 14 13 19 19 O 1.44446 * 85.42693 * 223.23936 * 18 15 14 20 20 C 1.44172 * 93.37824 * 24.09075 * 19 18 15 21 21 H 1.08999 * 109.47458 * 305.40251 * 1 2 3 22 22 H 1.09006 * 109.47025 * 65.39725 * 1 2 3 23 23 H 1.08994 * 109.47594 * 185.39163 * 1 2 3 24 24 H 1.08999 * 109.47039 * 240.00112 * 2 1 3 25 25 H 1.08998 * 109.46630 * 120.00160 * 2 1 3 26 26 H 0.97002 * 119.99969 * 179.97438 * 8 7 5 27 27 H 1.00901 * 111.00210 * 205.06994 * 13 3 2 28 28 H 1.08996 * 109.47514 * 305.90547 * 14 13 3 29 29 H 1.09005 * 109.47113 * 65.90761 * 14 13 3 30 30 H 1.09009 * 109.46963 * 299.99605 * 16 15 14 31 31 H 1.09001 * 109.47459 * 59.99750 * 16 15 14 32 32 H 1.09009 * 109.46383 * 299.99529 * 17 16 15 33 33 H 1.09001 * 109.47365 * 59.99262 * 17 16 15 34 34 H 1.08998 * 109.47301 * 180.02562 * 17 16 15 35 35 H 1.09001 * 113.86011 * 337.35178 * 18 15 14 36 36 H 1.09002 * 113.86110 * 109.05039 * 18 15 14 37 37 H 1.08997 * 113.86437 * 221.76312 * 20 19 18 38 38 H 1.09005 * 113.86724 * 90.05940 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4426 -0.0324 5 6 1.5013 2.1658 -1.2074 6 1 0.8838 3.0427 -1.0805 7 6 1.7969 1.7080 -2.4739 8 7 2.5485 0.6399 -2.6283 9 14 1.1286 2.6041 -3.9705 10 1 2.0940 3.6505 -4.3929 11 1 0.9309 1.6365 -5.0794 12 1 -0.1702 3.2378 -3.6289 13 7 1.5864 2.1222 1.2207 14 6 2.4518 1.7905 2.3605 15 6 1.8663 2.3950 3.6383 16 6 2.7084 2.0977 4.8806 17 6 2.0521 2.7361 6.1064 18 6 0.3625 2.1184 3.8249 19 8 0.2749 3.5042 4.2226 20 6 1.4653 3.8757 3.4989 21 1 -0.3634 0.5953 0.8376 22 1 -0.3633 0.4279 -0.9344 23 1 -0.3634 -1.0230 0.0966 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 2.7561 0.3177 -3.5194 27 1 1.5378 3.1205 1.0820 28 1 2.5141 0.7075 2.4663 29 1 3.4488 2.1969 2.1900 30 1 2.7749 1.0192 5.0249 31 1 3.7091 2.5090 4.7482 32 1 1.9853 3.8145 5.9623 33 1 1.0515 2.3245 6.2386 34 1 2.6523 2.5247 6.9914 35 1 -0.1626 1.8917 2.8970 36 1 0.1399 1.4134 4.6259 37 1 2.1154 4.5616 4.0419 38 1 1.2776 4.1869 2.4712 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308600275.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:22 Heat of formation + Delta-G solvation = -23.641258 kcal Electronic energy + Delta-G solvation = -16813.874091 eV Core-core repulsion = 14271.279722 eV Total energy + Delta-G solvation = -2542.594369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.60777 -36.19068 -33.60686 -32.38423 -30.75267 -28.45637 -26.27448 -26.01381 -24.25393 -23.26381 -22.37889 -19.04436 -18.14340 -16.75717 -15.97947 -15.74801 -15.11762 -14.73032 -14.36367 -13.97186 -13.43625 -13.07584 -12.79039 -12.46765 -12.05005 -11.90400 -11.82879 -11.62315 -11.20808 -11.12178 -10.93555 -10.67318 -10.43483 -10.18716 -10.07892 -9.88125 -9.64680 -9.37838 -9.13912 -8.77615 -8.48385 -7.26706 -6.03346 -4.08489 3.28200 3.35607 3.39207 4.07065 4.38928 4.47436 4.87815 5.10671 5.28281 5.38962 5.40027 5.52967 5.70370 5.74181 5.88102 5.93655 5.99673 6.11599 6.20942 6.30351 6.40474 6.46271 6.51007 6.53381 6.58149 6.70097 6.84501 7.20622 7.29199 7.47706 7.71606 7.78050 7.81256 8.24854 8.35682 8.63645 8.99802 9.56497 11.02824 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041517 B = 0.006699 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.263537 B = 4178.659871 C = 4332.590334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.217 3.783 4 H -0.002 1.002 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.684 5.684 14 C 0.067 3.933 15 C -0.126 4.126 16 C -0.099 4.099 17 C -0.146 4.146 18 C 0.052 3.948 19 O -0.386 6.386 20 C 0.044 3.956 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.012 0.988 24 H 0.085 0.915 25 H 0.009 0.991 26 H 0.260 0.740 27 H 0.328 0.672 28 H 0.069 0.931 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 2.115 11.703 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.015 0.985 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.317 5.317 14 C -0.063 4.063 15 C -0.127 4.127 16 C -0.137 4.137 17 C -0.203 4.203 18 C -0.024 4.024 19 O -0.305 6.305 20 C -0.033 4.033 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.031 0.969 24 H 0.104 0.896 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.785 1.654 11.854 11.994 hybrid contribution 0.700 0.774 -1.259 1.635 sum -0.086 2.428 10.594 10.869 Atomic orbital electron populations 1.21439 0.97459 0.97087 1.01603 1.21431 0.95106 0.98213 0.99325 1.19101 0.93109 0.91591 0.85255 0.98455 1.21136 1.31566 1.11960 0.90255 0.92325 1.24876 0.95097 0.95005 0.98864 1.69889 1.37423 1.23034 1.22482 0.86582 0.79394 0.79413 0.82536 1.20844 1.21257 1.19847 1.60711 1.51958 1.13283 1.05703 1.21771 0.93937 1.00188 0.90436 1.23682 0.96864 0.95989 0.96156 1.21229 0.98302 1.00949 0.93174 1.21780 1.00630 1.01360 0.96540 1.24103 0.94223 0.83697 1.00370 1.89610 1.47805 1.24182 1.68923 1.23979 0.86299 0.95997 0.97052 0.93509 0.92914 0.96876 0.89646 0.97209 0.92981 0.85325 0.91244 0.96056 0.91571 0.91773 0.92440 0.92320 0.93592 0.87956 0.90644 0.90312 0.89790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.46 37.16 0.35 -2.26 16 2 C -0.10 -2.42 5.53 -26.73 -0.15 -2.57 16 3 C 0.22 5.23 2.29 -68.86 -0.16 5.07 16 4 H 0.00 -0.06 7.92 -51.93 -0.41 -0.47 16 5 C -0.51 -13.42 7.35 -34.44 -0.25 -13.68 16 6 H 0.06 1.54 7.68 -52.49 -0.40 1.14 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.87 11.34 55.43 0.63 -24.24 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.68 -13.57 4.29 -107.95 -0.46 -14.03 16 14 C 0.07 1.14 5.17 -3.82 -0.02 1.12 16 15 C -0.13 -1.80 1.38 -153.43 -0.21 -2.01 16 16 C -0.10 -1.19 5.65 -26.73 -0.15 -1.34 16 17 C -0.15 -1.66 8.63 37.16 0.32 -1.34 16 18 C 0.05 0.78 7.61 37.64 0.29 1.07 16 19 O -0.39 -6.10 10.87 -35.23 -0.38 -6.48 16 20 C 0.04 0.63 7.58 37.64 0.29 0.91 16 21 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 22 H 0.05 1.26 7.37 -51.93 -0.38 0.87 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 2.27 6.12 -51.93 -0.32 1.95 16 25 H 0.01 0.21 7.09 -51.93 -0.37 -0.16 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.33 6.45 6.28 -39.29 -0.25 6.20 16 28 H 0.07 1.23 7.03 -51.93 -0.36 0.87 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.68 6.53 -51.92 -0.34 0.34 16 33 H 0.06 0.70 6.53 -51.93 -0.34 0.36 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 1.71 7.28 -51.93 -0.38 1.33 16 36 H 0.08 1.01 7.33 -51.93 -0.38 0.63 16 37 H 0.08 0.99 7.33 -51.93 -0.38 0.61 16 38 H 0.08 1.26 6.09 -51.93 -0.32 0.95 16 LS Contribution 290.40 15.07 4.38 4.38 Total: -1.00 -27.12 290.40 -6.92 -34.04 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.27 Total: 3.80 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 0.21 Total: -13.42 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.17 Total: -38.27 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.38 Total: -6.48 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.12 -6.92 -34.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308600275.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.403 kcal (2) G-P(sol) polarization free energy of solvation -27.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds