Wall clock time and date at job start Sun Mar 29 2020 21:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46979 * 2 1 4 4 H 1.09004 * 109.46813 * 181.80858 * 3 2 1 5 5 C 1.50703 * 109.47198 * 301.81035 * 3 2 1 6 6 H 1.08001 * 119.99530 * 120.00586 * 5 3 2 7 7 C 1.37869 * 120.00079 * 299.99970 * 5 3 2 8 8 N 1.31518 * 120.00140 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00147 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46983 * 90.00250 * 9 7 5 11 11 H 1.48495 * 109.47185 * 210.00118 * 9 7 5 12 12 H 1.48501 * 109.46840 * 330.00562 * 9 7 5 13 13 N 1.46897 * 109.47193 * 61.81267 * 3 2 1 14 14 C 1.46899 * 111.00018 * 81.11224 * 13 3 2 15 15 C 1.53001 * 109.47467 * 185.90671 * 14 13 3 16 16 C 1.52993 * 113.00420 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47410 * 180.02562 * 16 15 14 18 18 C 1.54042 * 113.81553 * 48.17162 * 15 14 13 19 19 O 1.44446 * 85.42693 * 223.23936 * 18 15 14 20 20 C 1.44172 * 93.37824 * 24.09075 * 19 18 15 21 21 H 1.08999 * 109.47458 * 305.40251 * 1 2 3 22 22 H 1.09006 * 109.47025 * 65.39725 * 1 2 3 23 23 H 1.08994 * 109.47594 * 185.39163 * 1 2 3 24 24 H 1.08999 * 109.47039 * 240.00112 * 2 1 3 25 25 H 1.08998 * 109.46630 * 120.00160 * 2 1 3 26 26 H 0.97002 * 119.99969 * 179.97438 * 8 7 5 27 27 H 1.00901 * 111.00210 * 205.06994 * 13 3 2 28 28 H 1.08996 * 109.47514 * 305.90547 * 14 13 3 29 29 H 1.09005 * 109.47113 * 65.90761 * 14 13 3 30 30 H 1.09009 * 109.46963 * 299.99605 * 16 15 14 31 31 H 1.09001 * 109.47459 * 59.99750 * 16 15 14 32 32 H 1.09009 * 109.46383 * 299.99529 * 17 16 15 33 33 H 1.09001 * 109.47365 * 59.99262 * 17 16 15 34 34 H 1.08998 * 109.47301 * 180.02562 * 17 16 15 35 35 H 1.09001 * 113.86011 * 337.35178 * 18 15 14 36 36 H 1.09002 * 113.86110 * 109.05039 * 18 15 14 37 37 H 1.08997 * 113.86437 * 221.76312 * 20 19 18 38 38 H 1.09005 * 113.86724 * 90.05940 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4426 -0.0324 5 6 1.5013 2.1658 -1.2074 6 1 0.8838 3.0427 -1.0805 7 6 1.7969 1.7080 -2.4739 8 7 2.5485 0.6399 -2.6283 9 14 1.1286 2.6041 -3.9705 10 1 2.0940 3.6505 -4.3929 11 1 0.9309 1.6365 -5.0794 12 1 -0.1702 3.2378 -3.6289 13 7 1.5864 2.1222 1.2207 14 6 2.4518 1.7905 2.3605 15 6 1.8663 2.3950 3.6383 16 6 2.7084 2.0977 4.8806 17 6 2.0521 2.7361 6.1064 18 6 0.3625 2.1184 3.8249 19 8 0.2749 3.5042 4.2226 20 6 1.4653 3.8757 3.4989 21 1 -0.3634 0.5953 0.8376 22 1 -0.3633 0.4279 -0.9344 23 1 -0.3634 -1.0230 0.0966 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 2.7561 0.3177 -3.5194 27 1 1.5378 3.1205 1.0820 28 1 2.5141 0.7075 2.4663 29 1 3.4488 2.1969 2.1900 30 1 2.7749 1.0192 5.0249 31 1 3.7091 2.5090 4.7482 32 1 1.9853 3.8145 5.9623 33 1 1.0515 2.3245 6.2386 34 1 2.6523 2.5247 6.9914 35 1 -0.1626 1.8917 2.8970 36 1 0.1399 1.4134 4.6259 37 1 2.1154 4.5616 4.0419 38 1 1.2776 4.1869 2.4712 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308600275.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:22 Heat of formation + Delta-G solvation = -39.923133 kcal Electronic energy + Delta-G solvation = -16814.580126 eV Core-core repulsion = 14271.279722 eV Total energy + Delta-G solvation = -2543.300404 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.80347 -37.96125 -34.99984 -33.95781 -32.50819 -29.89098 -27.80696 -27.43807 -25.56244 -25.12362 -23.61442 -20.88341 -19.33740 -18.53229 -17.28940 -17.10937 -16.69258 -16.39355 -15.71763 -15.31382 -15.08579 -14.87930 -14.09625 -13.87499 -13.73148 -13.38473 -12.97915 -12.89759 -12.81923 -12.66263 -12.40506 -12.28325 -12.19517 -11.79851 -11.67870 -11.32557 -11.12790 -11.05003 -10.76223 -10.53059 -10.31740 -8.96686 -8.09179 -6.20517 1.41328 1.43783 1.52997 2.42940 2.90534 3.20241 3.30726 3.57579 3.94879 4.17376 4.33248 4.44092 4.61913 4.63426 4.65204 4.74187 4.78270 4.80084 4.84482 4.88832 4.97847 5.11282 5.24801 5.28190 5.33781 5.34761 5.40947 5.44434 5.52146 5.58454 5.72672 5.83055 5.91406 6.30333 6.50418 6.81616 7.03035 7.48388 8.96100 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041517 B = 0.006699 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.263537 B = 4178.659871 C = 4332.590334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C 0.223 3.777 4 H -0.038 1.038 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.677 5.677 14 C 0.070 3.930 15 C -0.116 4.116 16 C -0.096 4.096 17 C -0.141 4.141 18 C 0.052 3.948 19 O -0.396 6.396 20 C 0.042 3.958 21 H 0.055 0.945 22 H 0.029 0.971 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.022 0.978 26 H 0.260 0.740 27 H 0.330 0.670 28 H 0.063 0.937 29 H 0.018 0.982 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 2.570 12.889 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.115 3.885 4 H -0.021 1.021 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.308 5.308 14 C -0.060 4.060 15 C -0.117 4.117 16 C -0.133 4.133 17 C -0.198 4.198 18 C -0.025 4.025 19 O -0.315 6.315 20 C -0.035 4.035 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.155 2.120 13.057 13.278 hybrid contribution 0.835 0.634 -1.585 1.900 sum -0.320 2.754 11.472 11.802 Atomic orbital electron populations 1.21302 0.96002 0.98412 1.00678 1.21302 0.96273 0.97623 0.98434 1.18880 0.90808 0.92278 0.86565 1.02085 1.21404 1.31259 1.11931 0.91294 0.92591 1.25588 0.95399 0.95682 1.01477 1.70020 1.38481 1.24241 1.22902 0.85648 0.78885 0.78310 0.79334 1.20387 1.21179 1.19382 1.60632 1.52285 1.13088 1.04815 1.21783 0.93506 1.00030 0.90671 1.23645 0.96692 0.95670 0.95643 1.21246 0.98254 1.01649 0.92196 1.21730 1.00503 1.00807 0.96759 1.24079 0.94322 0.83851 1.00215 1.89607 1.48391 1.24565 1.68977 1.24052 0.86153 0.96456 0.96795 0.92564 0.95198 0.94768 0.92663 0.95898 0.93090 0.85178 0.91830 0.96402 0.90836 0.90928 0.92950 0.92964 0.91773 0.89913 0.88807 0.88260 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.62 9.46 71.98 0.68 -3.94 16 2 C -0.10 -4.64 5.53 30.59 0.17 -4.47 16 3 C 0.22 10.89 2.29 44.17 0.10 10.99 16 4 H -0.04 -2.12 7.92 -2.39 -0.02 -2.14 16 5 C -0.52 -27.58 7.35 25.60 0.19 -27.40 16 6 H 0.06 2.94 7.68 -2.91 -0.02 2.92 16 7 C 0.02 0.96 5.30 84.65 0.45 1.40 16 8 N -0.92 -52.09 11.34 21.44 0.24 -51.84 16 9 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 N -0.68 -26.69 4.29 -495.45 -2.13 -28.82 16 14 C 0.07 2.32 5.17 86.30 0.45 2.77 16 15 C -0.12 -3.10 1.38 -51.48 -0.07 -3.17 16 16 C -0.10 -2.06 5.65 30.59 0.17 -1.89 16 17 C -0.14 -2.79 8.63 71.98 0.62 -2.17 16 18 C 0.05 1.46 7.61 72.30 0.55 2.01 16 19 O -0.40 -11.80 10.87 -148.98 -1.62 -13.42 16 20 C 0.04 1.14 7.58 72.30 0.55 1.69 16 21 H 0.06 2.30 7.50 -2.39 -0.02 2.28 16 22 H 0.03 1.40 7.37 -2.38 -0.02 1.38 16 23 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 2.98 6.12 -2.39 -0.01 2.96 16 25 H 0.02 0.99 7.09 -2.39 -0.02 0.98 16 26 H 0.26 14.15 8.31 -92.71 -0.77 13.37 16 27 H 0.33 12.91 6.28 -89.69 -0.56 12.34 16 28 H 0.06 2.19 7.03 -2.39 -0.02 2.18 16 29 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.09 6.53 -2.38 -0.02 1.08 16 33 H 0.05 1.10 6.53 -2.39 -0.02 1.09 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 2.67 7.28 -2.39 -0.02 2.66 16 36 H 0.09 2.29 7.33 -2.39 -0.02 2.28 16 37 H 0.10 2.27 7.33 -2.39 -0.02 2.25 16 38 H 0.07 2.13 6.09 -2.38 -0.01 2.12 16 Total: -1.00 -57.35 290.40 2.85 -54.50 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.47 Total: 18.61 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 3.86 Total: -24.17 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.88 Total: -80.66 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.62 Total: -13.42 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -57.35 2.85 -54.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308600275.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.579 kcal (2) G-P(sol) polarization free energy of solvation -57.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds