Wall clock time and date at job start Sun Mar 29 2020 22:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53098 * 109.47924 * 239.97571 * 2 1 3 5 5 C 1.53173 * 109.16229 * 182.39751 * 4 2 1 6 6 H 1.08994 * 109.54460 * 176.85324 * 5 4 2 7 7 N 1.46909 * 109.54388 * 297.02618 * 5 4 2 8 8 C 1.46896 * 110.99968 * 205.00112 * 7 5 4 9 9 C 1.52996 * 109.47351 * 180.02562 * 8 7 5 10 10 C 1.50695 * 109.47306 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99867 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99796 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99771 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47059 * 90.00607 * 14 12 10 16 16 H 1.48496 * 109.47082 * 209.99992 * 14 12 10 17 17 H 1.48494 * 109.47238 * 330.00238 * 14 12 10 18 18 C 1.53171 * 109.03669 * 56.98045 * 5 4 2 19 19 C 1.53090 * 109.16805 * 303.01726 * 18 5 4 20 20 H 1.08993 * 109.48419 * 297.61659 * 19 18 5 21 21 C 1.52999 * 109.48287 * 177.58652 * 19 18 5 22 22 O 1.42901 * 109.48873 * 120.02844 * 2 1 3 23 23 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46578 * 299.99745 * 1 2 3 25 25 H 1.08998 * 109.47090 * 59.99839 * 1 2 3 26 26 H 1.08999 * 109.51953 * 302.30753 * 4 2 1 27 27 H 1.09006 * 109.51784 * 62.48988 * 4 2 1 28 28 H 1.00896 * 110.99956 * 328.95366 * 7 5 4 29 29 H 1.09004 * 109.47526 * 300.00006 * 8 7 5 30 30 H 1.08999 * 109.47291 * 59.99707 * 8 7 5 31 31 H 1.09005 * 109.46676 * 299.99814 * 9 8 7 32 32 H 1.08999 * 109.47290 * 59.99549 * 9 8 7 33 33 H 0.97005 * 119.99588 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.51983 * 62.92805 * 18 5 4 35 35 H 1.09002 * 109.52409 * 183.11428 * 18 5 4 36 36 H 1.09004 * 109.47025 * 60.00378 * 21 19 18 37 37 H 1.09003 * 109.47003 * 180.02562 * 21 19 18 38 38 H 1.08994 * 109.47527 * 300.00403 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2497 5 6 3.5711 -0.7706 -1.2124 6 1 3.9392 -1.3322 -2.0710 7 7 4.1071 0.5966 -1.2532 8 6 5.4695 0.6118 -1.8025 9 6 5.9930 2.0491 -1.8284 10 6 7.3908 2.0646 -2.3913 11 1 7.8588 1.1416 -2.7001 12 6 8.0718 3.2573 -2.5131 13 7 7.5016 4.3813 -2.1375 14 14 9.8042 3.2765 -3.2116 15 1 9.7418 3.4479 -4.6854 16 1 10.5662 4.4024 -2.6142 17 1 10.4816 1.9947 -2.8905 18 6 4.0178 -1.4597 0.0805 19 6 3.4311 -0.7091 1.2788 20 1 3.8195 0.3091 1.2957 21 6 3.8232 -1.4264 2.5721 22 8 2.0068 -0.6741 1.1663 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6444 -1.7374 -1.2710 27 1 1.7146 -0.1842 -2.1399 28 1 3.4992 1.2079 -1.7773 29 1 6.1201 -0.0002 -1.1777 30 1 5.4571 0.2108 -2.8160 31 1 5.3425 2.6614 -2.4531 32 1 6.0054 2.4497 -0.8148 33 1 7.9809 5.2204 -2.2229 34 1 3.6617 -2.4899 0.0860 35 1 5.1061 -1.4492 0.1416 36 1 4.9096 -1.4539 2.6573 37 1 3.4049 -0.8921 3.4251 38 1 3.4343 -2.4445 2.5553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308638114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:32 Heat of formation + Delta-G solvation = -73.005681 kcal Electronic energy + Delta-G solvation = -16329.633790 eV Core-core repulsion = 13784.898819 eV Total energy + Delta-G solvation = -2544.734971 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.60319 -35.90394 -33.56200 -33.28279 -31.58086 -29.60484 -27.81058 -26.34158 -23.99691 -22.22739 -21.65069 -20.52015 -19.29915 -16.30843 -16.26589 -15.62614 -15.38029 -14.57345 -14.49443 -14.33092 -13.55441 -13.17422 -12.77734 -12.58612 -12.30754 -12.11923 -11.90227 -11.83925 -11.65897 -11.57974 -11.13287 -10.96221 -10.73100 -10.54384 -10.45798 -10.16296 -9.95956 -9.37106 -9.15201 -9.14076 -8.36205 -7.81549 -6.00836 -4.03454 3.31115 3.37461 3.40767 3.88585 4.41993 4.66445 4.82069 5.01681 5.09923 5.13689 5.35229 5.36849 5.43515 5.56055 5.65357 5.69483 5.75389 5.83255 5.87657 5.98789 6.09721 6.11976 6.18483 6.22608 6.28853 6.37894 6.44105 6.49881 6.97559 7.46980 7.55029 7.71470 7.80934 7.94243 8.07108 8.42578 9.03819 9.60451 11.10580 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038493 B = 0.005405 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.225246 B = 5179.300085 C = 5419.510742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.093 3.907 3 H 0.068 0.932 4 C -0.149 4.149 5 C 0.081 3.919 6 H 0.042 0.958 7 N -0.686 5.686 8 C 0.067 3.933 9 C 0.026 3.974 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.134 4.134 19 C 0.094 3.906 20 H 0.076 0.924 21 C -0.144 4.144 22 O -0.385 6.385 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.336 0.664 29 H 0.057 0.943 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.025 0.975 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.302 -10.439 4.425 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.036 3.964 3 H 0.086 0.914 4 C -0.187 4.187 5 C -0.030 4.030 6 H 0.060 0.940 7 N -0.318 5.318 8 C -0.061 4.061 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.172 4.172 19 C 0.037 3.963 20 H 0.094 0.906 21 C -0.201 4.201 22 O -0.305 6.305 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.176 -10.351 5.230 16.106 hybrid contribution 1.055 0.021 -1.668 1.974 sum -10.120 -10.330 3.562 14.894 Atomic orbital electron populations 1.21782 0.93909 1.02320 1.02158 1.21930 0.93811 0.95992 0.84712 0.91373 1.22392 0.95765 1.01655 0.98911 1.21541 0.93253 0.91383 0.96796 0.94030 1.60646 1.04869 1.07109 1.59196 1.22190 0.87174 1.01521 0.95242 1.19058 0.95160 0.89206 0.97726 1.21174 0.99913 0.93095 1.41895 0.92818 1.25000 0.98084 0.95661 0.95572 1.69974 1.37564 0.98023 1.47687 0.86591 0.84598 0.77659 0.79129 1.20710 1.21170 1.19889 1.22146 1.01459 0.98443 0.95149 1.21970 0.80503 0.99951 0.93892 0.90644 1.21774 1.01251 1.00484 0.96578 1.87809 1.21598 1.78104 1.42970 0.92322 0.92056 0.91382 0.91137 0.91239 0.84599 0.92408 0.96731 0.96896 0.95692 0.92986 0.91939 0.90887 0.91218 0.92235 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.57 37.16 0.36 -1.18 16 2 C 0.09 1.23 3.10 -26.68 -0.08 1.14 16 3 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 4 C -0.15 -1.88 4.81 -26.59 -0.13 -2.01 16 5 C 0.08 1.19 2.84 -67.53 -0.19 1.00 16 6 H 0.04 0.63 7.80 -51.93 -0.41 0.23 16 7 N -0.69 -11.99 5.11 -106.54 -0.54 -12.53 16 8 C 0.07 1.40 5.43 -3.83 -0.02 1.38 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.53 16 10 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 14 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.13 -1.90 5.03 -26.60 -0.13 -2.04 16 19 C 0.09 1.36 3.11 -26.68 -0.08 1.28 16 20 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 21 C -0.14 -1.75 9.56 37.16 0.36 -1.39 16 22 O -0.38 -5.67 10.05 -35.23 -0.35 -6.02 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 28 H 0.34 5.70 8.32 -39.29 -0.33 5.38 16 29 H 0.06 1.22 7.43 -51.93 -0.39 0.83 16 30 H 0.01 0.30 8.06 -51.93 -0.42 -0.12 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.09 7.44 -51.93 -0.39 0.71 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -29.88 302.63 -8.02 -37.90 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.92 Total: 0.51 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -0.49 Total: -14.86 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.19 Total: -38.77 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.35 Total: -6.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.88 -8.02 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308638114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.104 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds