Wall clock time and date at job start Sun Mar 29 2020 22:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48254 * 2 1 4 4 C 1.53098 * 109.47924 * 239.97571 * 2 1 3 5 5 C 1.53173 * 109.16229 * 182.39751 * 4 2 1 6 6 H 1.08994 * 109.54460 * 176.85324 * 5 4 2 7 7 N 1.46909 * 109.54388 * 297.02618 * 5 4 2 8 8 C 1.46896 * 110.99968 * 205.00112 * 7 5 4 9 9 C 1.52996 * 109.47351 * 180.02562 * 8 7 5 10 10 C 1.50695 * 109.47306 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99867 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99796 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99771 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47059 * 90.00607 * 14 12 10 16 16 H 1.48496 * 109.47082 * 209.99992 * 14 12 10 17 17 H 1.48494 * 109.47238 * 330.00238 * 14 12 10 18 18 C 1.53171 * 109.03669 * 56.98045 * 5 4 2 19 19 C 1.53090 * 109.16805 * 303.01726 * 18 5 4 20 20 H 1.08993 * 109.48419 * 297.61659 * 19 18 5 21 21 C 1.52999 * 109.48287 * 177.58652 * 19 18 5 22 22 O 1.42901 * 109.48873 * 120.02844 * 2 1 3 23 23 H 1.09001 * 109.47080 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46578 * 299.99745 * 1 2 3 25 25 H 1.08998 * 109.47090 * 59.99839 * 1 2 3 26 26 H 1.08999 * 109.51953 * 302.30753 * 4 2 1 27 27 H 1.09006 * 109.51784 * 62.48988 * 4 2 1 28 28 H 1.00896 * 110.99956 * 328.95366 * 7 5 4 29 29 H 1.09004 * 109.47526 * 300.00006 * 8 7 5 30 30 H 1.08999 * 109.47291 * 59.99707 * 8 7 5 31 31 H 1.09005 * 109.46676 * 299.99814 * 9 8 7 32 32 H 1.08999 * 109.47290 * 59.99549 * 9 8 7 33 33 H 0.97005 * 119.99588 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.51983 * 62.92805 * 18 5 4 35 35 H 1.09002 * 109.52409 * 183.11428 * 18 5 4 36 36 H 1.09004 * 109.47025 * 60.00378 * 21 19 18 37 37 H 1.09003 * 109.47003 * 180.02562 * 21 19 18 38 38 H 1.08994 * 109.47527 * 300.00403 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2497 5 6 3.5711 -0.7706 -1.2124 6 1 3.9392 -1.3322 -2.0710 7 7 4.1071 0.5966 -1.2532 8 6 5.4695 0.6118 -1.8025 9 6 5.9930 2.0491 -1.8284 10 6 7.3908 2.0646 -2.3913 11 1 7.8588 1.1416 -2.7001 12 6 8.0718 3.2573 -2.5131 13 7 7.5016 4.3813 -2.1375 14 14 9.8042 3.2765 -3.2116 15 1 9.7418 3.4479 -4.6854 16 1 10.5662 4.4024 -2.6142 17 1 10.4816 1.9947 -2.8905 18 6 4.0178 -1.4597 0.0805 19 6 3.4311 -0.7091 1.2788 20 1 3.8195 0.3091 1.2957 21 6 3.8232 -1.4264 2.5721 22 8 2.0068 -0.6741 1.1663 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6444 -1.7374 -1.2710 27 1 1.7146 -0.1842 -2.1399 28 1 3.4992 1.2079 -1.7773 29 1 6.1201 -0.0002 -1.1777 30 1 5.4571 0.2108 -2.8160 31 1 5.3425 2.6614 -2.4531 32 1 6.0054 2.4497 -0.8148 33 1 7.9809 5.2204 -2.2229 34 1 3.6617 -2.4899 0.0860 35 1 5.1061 -1.4492 0.1416 36 1 4.9096 -1.4539 2.6573 37 1 3.4049 -0.8921 3.4251 38 1 3.4343 -2.4445 2.5553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308638114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:31 Heat of formation + Delta-G solvation = -91.963758 kcal Electronic energy + Delta-G solvation = -16330.455873 eV Core-core repulsion = 13784.898819 eV Total energy + Delta-G solvation = -2545.557054 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74694 -37.36448 -35.25811 -34.56556 -33.20379 -30.91253 -29.37265 -27.38306 -25.94477 -23.36863 -22.77021 -22.34373 -20.50937 -18.47997 -17.36123 -16.87951 -16.71451 -16.40495 -15.86202 -15.64163 -14.89856 -14.50707 -14.37186 -13.89030 -13.64605 -13.34752 -13.01950 -12.95382 -12.87800 -12.82771 -12.78375 -12.66457 -12.37875 -12.03457 -11.77686 -11.60048 -11.43680 -11.28569 -11.03415 -10.58403 -10.31598 -9.25047 -8.21519 -6.33110 1.39653 1.41128 1.52339 2.39595 2.84440 3.12100 3.28970 3.73113 3.93972 4.00518 4.03290 4.34721 4.38492 4.48475 4.54319 4.60579 4.65784 4.74820 4.77745 4.83171 4.86125 4.96612 4.98755 5.06709 5.13899 5.17119 5.27892 5.35005 5.40063 5.44960 5.66062 5.77966 6.13016 6.26660 6.44997 6.52680 6.84260 7.36396 8.90630 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038493 B = 0.005405 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.225246 B = 5179.300085 C = 5419.510742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.048 0.952 4 C -0.141 4.141 5 C 0.077 3.923 6 H 0.044 0.956 7 N -0.689 5.689 8 C 0.087 3.913 9 C 0.033 3.967 10 C -0.545 4.545 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.263 1.263 18 C -0.131 4.131 19 C 0.093 3.907 20 H 0.045 0.955 21 C -0.140 4.140 22 O -0.392 6.392 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.338 0.662 29 H 0.056 0.944 30 H 0.017 0.983 31 H -0.009 1.009 32 H -0.007 1.007 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.420 -11.925 3.925 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 H 0.066 0.934 4 C -0.179 4.179 5 C -0.033 4.033 6 H 0.062 0.938 7 N -0.321 5.321 8 C -0.041 4.041 9 C -0.004 4.004 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.169 4.169 19 C 0.035 3.965 20 H 0.064 0.936 21 C -0.197 4.197 22 O -0.313 6.313 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.157 0.843 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.009 0.991 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.310 -11.855 4.732 17.054 hybrid contribution 1.036 0.506 -1.486 1.881 sum -10.274 -11.349 3.245 15.649 Atomic orbital electron populations 1.21767 0.91720 1.03114 1.02991 1.22075 0.95529 0.94901 0.84601 0.93381 1.22349 0.93768 1.02713 0.99073 1.21659 0.94929 0.89478 0.97199 0.93790 1.60547 1.03484 1.09210 1.58826 1.21777 0.88987 0.97838 0.95533 1.18900 0.94509 0.91947 0.95044 1.21608 1.01079 0.93556 1.42112 0.92247 1.25967 1.02778 0.95154 0.95738 1.70109 1.39565 0.98764 1.48734 0.85426 0.78856 0.78070 0.78564 1.19689 1.20704 1.18749 1.22134 1.00809 0.99306 0.94686 1.21944 0.80579 0.98682 0.95257 0.93644 1.21756 1.01718 1.00839 0.95356 1.87811 1.21478 1.78136 1.43831 0.91473 0.92158 0.89708 0.89502 0.90031 0.84330 0.92597 0.96458 0.99111 0.98859 0.92732 0.90064 0.91945 0.90629 0.92034 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.57 71.98 0.69 -1.97 16 2 C 0.09 2.17 3.10 30.63 0.10 2.27 16 3 H 0.05 1.39 7.75 -2.39 -0.02 1.37 16 4 C -0.14 -3.27 4.81 30.68 0.15 -3.12 16 5 C 0.08 2.18 2.84 45.03 0.13 2.31 16 6 H 0.04 1.25 7.80 -2.39 -0.02 1.24 16 7 N -0.69 -24.18 5.11 -490.98 -2.51 -26.69 16 8 C 0.09 3.69 5.43 86.30 0.47 4.16 16 9 C 0.03 1.80 5.23 29.85 0.16 1.95 16 10 C -0.55 -31.33 9.11 25.60 0.23 -31.10 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 12 C 0.00 0.10 5.46 84.66 0.46 0.56 16 13 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 14 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 18 C -0.13 -3.58 5.03 30.68 0.15 -3.42 16 19 C 0.09 2.64 3.11 30.62 0.10 2.74 16 20 H 0.05 1.55 7.75 -2.39 -0.02 1.53 16 21 C -0.14 -3.23 9.56 71.98 0.69 -2.54 16 22 O -0.39 -11.13 10.05 -148.98 -1.50 -12.63 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.71 8.07 -2.38 -0.02 1.69 16 28 H 0.34 11.58 8.32 -89.70 -0.75 10.83 16 29 H 0.06 2.37 7.43 -2.38 -0.02 2.35 16 30 H 0.02 0.72 8.06 -2.39 -0.02 0.70 16 31 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 34 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.83 7.44 -2.39 -0.02 1.81 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -64.11 302.63 1.88 -62.23 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.26 Total: 15.78 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 3.32 Total: -28.17 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.22 Total: -83.62 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -1.50 Total: -12.63 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.11 1.88 -62.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308638114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.733 kcal (2) G-P(sol) polarization free energy of solvation -64.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds