Wall clock time and date at job start Sun Mar 29 2020 22:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47764 * 2 1 4 4 C 1.53088 * 109.48266 * 239.97297 * 2 1 3 5 5 C 1.53182 * 109.16393 * 182.39348 * 4 2 1 6 6 N 1.46898 * 109.54210 * 176.84872 * 5 4 2 7 7 C 1.46896 * 110.99883 * 155.00467 * 6 5 4 8 8 C 1.53002 * 109.47246 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46931 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 C 1.53179 * 109.03261 * 56.98532 * 5 4 2 18 18 C 1.53095 * 109.16457 * 303.01944 * 17 5 4 19 19 H 1.08993 * 109.48282 * 177.59229 * 18 17 5 20 20 C 1.53006 * 109.48806 * 297.62081 * 18 17 5 21 21 O 1.42899 * 109.41683 * 57.60591 * 18 17 5 22 22 H 1.09004 * 109.46894 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47281 * 300.02234 * 1 2 3 24 24 H 1.08998 * 109.46772 * 60.02651 * 1 2 3 25 25 H 1.09000 * 109.52074 * 62.49145 * 4 2 1 26 26 H 1.08996 * 109.57482 * 302.33566 * 4 2 1 27 27 H 1.08996 * 109.54720 * 297.02918 * 5 4 2 28 28 H 1.00904 * 110.99913 * 278.95530 * 6 5 4 29 29 H 1.09004 * 109.47535 * 59.99892 * 7 6 5 30 30 H 1.08996 * 109.47194 * 300.00215 * 7 6 5 31 31 H 1.09000 * 109.46986 * 60.00111 * 8 7 6 32 32 H 1.08993 * 109.47662 * 299.99888 * 8 7 6 33 33 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.52609 * 62.92060 * 17 5 4 35 35 H 1.08999 * 109.52242 * 183.11005 * 17 5 4 36 36 H 1.08997 * 109.47189 * 179.97438 * 20 18 17 37 37 H 1.08996 * 109.47093 * 299.95195 * 20 18 17 38 38 H 1.08998 * 109.46872 * 59.94770 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 3.5712 -0.7705 -1.2123 6 7 4.0672 -1.5275 -2.3693 7 6 5.4369 -1.1240 -2.7144 8 6 5.9182 -1.9328 -3.9208 9 6 7.3231 -1.5183 -4.2752 10 1 7.8229 -0.7548 -3.6976 11 6 7.9703 -2.1139 -5.3370 12 7 9.1965 -1.7526 -5.6460 13 14 7.1057 -3.4340 -6.3366 14 1 7.3826 -4.7662 -5.7418 15 1 5.6422 -3.1825 -6.3277 16 1 7.6049 -3.4027 -7.7348 17 6 4.0179 -1.4596 0.0807 18 6 3.4309 -0.7090 1.2790 19 1 3.7103 -1.2199 2.2003 20 6 3.9760 0.7205 1.3028 21 8 2.0068 -0.6741 1.1664 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5142 0.8898 24 1 -0.3633 0.5134 -0.8902 25 1 1.7147 -0.1843 -2.1398 26 1 1.6445 -1.7374 -1.2720 27 1 3.9689 0.2439 -1.2425 28 1 4.0146 -2.5210 -2.2009 29 1 6.0954 -1.3108 -1.8662 30 1 5.4520 -0.0620 -2.9591 31 1 5.2598 -1.7463 -4.7692 32 1 5.9032 -2.9947 -3.6757 33 1 9.6521 -2.1719 -6.3927 34 1 3.6617 -2.4898 0.0863 35 1 5.1061 -1.4492 0.1419 36 1 3.5576 1.2548 2.1557 37 1 5.0623 0.6937 1.3885 38 1 3.6969 1.2311 0.3811 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308638119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:29 Heat of formation + Delta-G solvation = -68.053876 kcal Electronic energy + Delta-G solvation = -16253.188056 eV Core-core repulsion = 13708.667812 eV Total energy + Delta-G solvation = -2544.520244 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.02833 -36.27209 -33.41867 -33.33441 -31.83240 -29.91454 -27.99482 -26.70142 -24.05643 -22.70439 -21.55447 -20.51108 -19.30776 -16.80124 -16.52452 -16.11741 -15.16288 -14.67552 -14.49695 -14.27048 -13.94406 -13.19033 -13.13858 -12.82729 -12.69835 -12.45900 -12.16604 -11.98217 -11.75876 -11.47403 -11.19123 -11.09022 -11.01556 -10.86510 -10.26419 -10.04188 -9.87246 -9.77840 -9.40191 -9.22111 -8.54203 -7.91659 -6.05057 -4.03475 3.31805 3.39347 3.45438 3.68424 4.42201 4.45977 4.67771 4.82004 4.89974 5.02286 5.10515 5.26762 5.29565 5.31371 5.33330 5.44440 5.50991 5.63058 5.77325 5.85929 5.88504 5.96885 6.03506 6.08253 6.14200 6.20123 6.30142 6.36398 6.75778 7.13366 7.23191 7.37095 7.60824 7.74776 7.89957 8.52366 8.98765 9.57441 11.08298 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045428 B = 0.005237 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.218429 B = 5345.280723 C = 5690.713877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.059 0.941 4 C -0.136 4.136 5 C 0.085 3.915 6 N -0.688 5.688 7 C 0.074 3.926 8 C -0.010 4.010 9 C -0.521 4.521 10 H 0.070 0.930 11 C 0.067 3.933 12 N -0.904 5.904 13 Si 0.881 3.119 14 H -0.278 1.278 15 H -0.263 1.263 16 H -0.288 1.288 17 C -0.180 4.180 18 C 0.093 3.907 19 H 0.098 0.902 20 C -0.187 4.187 21 O -0.378 6.378 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.336 0.664 29 H 0.021 0.979 30 H 0.063 0.937 31 H 0.025 0.975 32 H 0.008 0.992 33 H 0.263 0.737 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.096 2.736 12.832 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.077 0.923 4 C -0.174 4.174 5 C -0.026 4.026 6 N -0.317 5.317 7 C -0.054 4.054 8 C -0.048 4.048 9 C -0.560 4.560 10 H 0.088 0.912 11 C -0.134 4.134 12 N -0.543 5.543 13 Si 0.709 3.291 14 H -0.204 1.204 15 H -0.188 1.188 16 H -0.214 1.214 17 C -0.219 4.219 18 C 0.035 3.965 19 H 0.116 0.884 20 C -0.245 4.245 21 O -0.297 6.297 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.153 0.847 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.027 0.973 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.353 3.048 12.346 19.935 hybrid contribution 0.570 -1.041 -0.074 1.189 sum -14.783 2.007 12.272 19.317 Atomic orbital electron populations 1.21748 0.93299 1.02802 1.02152 1.22121 0.94736 0.95489 0.85250 0.92282 1.22221 0.95520 1.01869 0.97806 1.21627 0.94657 0.98157 0.88118 1.60696 1.25198 1.09304 1.36545 1.21978 0.85308 1.00252 0.97897 1.19551 0.96832 0.94718 0.93707 1.21069 0.97379 1.22735 1.14814 0.91160 1.25006 0.94675 0.96742 0.96975 1.69919 1.12042 1.43133 1.29212 0.86746 0.80765 0.82214 0.79406 1.20391 1.18775 1.21407 1.22960 1.01692 1.00640 0.96637 1.22068 0.80774 0.95437 0.98267 0.88391 1.22468 1.01973 0.97409 1.02601 1.87940 1.20719 1.77839 1.43227 0.91920 0.92150 0.91114 0.90448 0.91227 0.90457 0.84672 0.96025 0.91849 0.95682 0.97330 0.92724 0.91078 0.90753 0.92012 0.91375 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.57 37.16 0.36 -0.96 16 2 C 0.08 0.91 2.94 -26.69 -0.08 0.83 16 3 H 0.06 0.63 6.34 -51.93 -0.33 0.31 16 4 C -0.14 -1.68 5.03 -26.59 -0.13 -1.81 16 5 C 0.09 1.18 2.24 -67.53 -0.15 1.03 16 6 N -0.69 -11.59 6.26 -106.53 -0.67 -12.26 16 7 C 0.07 1.49 5.43 -3.83 -0.02 1.47 16 8 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 9 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 10 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 13 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 17 C -0.18 -2.28 4.90 -26.59 -0.13 -2.41 16 18 C 0.09 1.05 3.91 -26.68 -0.10 0.95 16 19 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.19 -1.94 8.66 37.16 0.32 -1.62 16 21 O -0.38 -4.70 10.24 -35.23 -0.36 -5.07 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.11 6.28 -51.93 -0.33 0.79 16 28 H 0.34 5.43 8.44 -39.29 -0.33 5.10 16 29 H 0.02 0.43 7.54 -51.93 -0.39 0.04 16 30 H 0.06 1.31 8.06 -51.93 -0.42 0.89 16 31 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 32 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.07 0.98 7.57 -51.93 -0.39 0.59 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.69 4.98 -51.93 -0.26 0.44 16 LS Contribution 294.27 15.07 4.43 4.43 Total: -1.00 -30.63 294.27 -7.58 -38.21 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.60 Total: 1.01 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -0.49 Total: -16.35 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.11 Total: -39.58 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.36 Total: -5.07 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.63 -7.58 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308638119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.843 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds