Wall clock time and date at job start Sun Mar 29 2020 22:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47764 * 2 1 4 4 C 1.53088 * 109.48266 * 239.97297 * 2 1 3 5 5 C 1.53182 * 109.16393 * 182.39348 * 4 2 1 6 6 N 1.46898 * 109.54210 * 176.84872 * 5 4 2 7 7 C 1.46896 * 110.99883 * 155.00467 * 6 5 4 8 8 C 1.53002 * 109.47246 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46931 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 C 1.53179 * 109.03261 * 56.98532 * 5 4 2 18 18 C 1.53095 * 109.16457 * 303.01944 * 17 5 4 19 19 H 1.08993 * 109.48282 * 177.59229 * 18 17 5 20 20 C 1.53006 * 109.48806 * 297.62081 * 18 17 5 21 21 O 1.42899 * 109.41683 * 57.60591 * 18 17 5 22 22 H 1.09004 * 109.46894 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47281 * 300.02234 * 1 2 3 24 24 H 1.08998 * 109.46772 * 60.02651 * 1 2 3 25 25 H 1.09000 * 109.52074 * 62.49145 * 4 2 1 26 26 H 1.08996 * 109.57482 * 302.33566 * 4 2 1 27 27 H 1.08996 * 109.54720 * 297.02918 * 5 4 2 28 28 H 1.00904 * 110.99913 * 278.95530 * 6 5 4 29 29 H 1.09004 * 109.47535 * 59.99892 * 7 6 5 30 30 H 1.08996 * 109.47194 * 300.00215 * 7 6 5 31 31 H 1.09000 * 109.46986 * 60.00111 * 8 7 6 32 32 H 1.08993 * 109.47662 * 299.99888 * 8 7 6 33 33 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.52609 * 62.92060 * 17 5 4 35 35 H 1.08999 * 109.52242 * 183.11005 * 17 5 4 36 36 H 1.08997 * 109.47189 * 179.97438 * 20 18 17 37 37 H 1.08996 * 109.47093 * 299.95195 * 20 18 17 38 38 H 1.08998 * 109.46872 * 59.94770 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 3.5712 -0.7705 -1.2123 6 7 4.0672 -1.5275 -2.3693 7 6 5.4369 -1.1240 -2.7144 8 6 5.9182 -1.9328 -3.9208 9 6 7.3231 -1.5183 -4.2752 10 1 7.8229 -0.7548 -3.6976 11 6 7.9703 -2.1139 -5.3370 12 7 9.1965 -1.7526 -5.6460 13 14 7.1057 -3.4340 -6.3366 14 1 7.3826 -4.7662 -5.7418 15 1 5.6422 -3.1825 -6.3277 16 1 7.6049 -3.4027 -7.7348 17 6 4.0179 -1.4596 0.0807 18 6 3.4309 -0.7090 1.2790 19 1 3.7103 -1.2199 2.2003 20 6 3.9760 0.7205 1.3028 21 8 2.0068 -0.6741 1.1664 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5142 0.8898 24 1 -0.3633 0.5134 -0.8902 25 1 1.7147 -0.1843 -2.1398 26 1 1.6445 -1.7374 -1.2720 27 1 3.9689 0.2439 -1.2425 28 1 4.0146 -2.5210 -2.2009 29 1 6.0954 -1.3108 -1.8662 30 1 5.4520 -0.0620 -2.9591 31 1 5.2598 -1.7463 -4.7692 32 1 5.9032 -2.9947 -3.6757 33 1 9.6521 -2.1719 -6.3927 34 1 3.6617 -2.4898 0.0863 35 1 5.1061 -1.4492 0.1419 36 1 3.5576 1.2548 2.1557 37 1 5.0623 0.6937 1.3885 38 1 3.6969 1.2311 0.3811 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308638119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:29 Heat of formation + Delta-G solvation = -88.943625 kcal Electronic energy + Delta-G solvation = -16254.093903 eV Core-core repulsion = 13708.667812 eV Total energy + Delta-G solvation = -2545.426092 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.00570 -37.62740 -35.24579 -34.27101 -33.45818 -31.28317 -29.31463 -27.60373 -25.86869 -23.65721 -22.65888 -22.32206 -20.32055 -18.97752 -17.52031 -17.09270 -16.40189 -16.31961 -15.82604 -15.55925 -15.17086 -14.71797 -14.49794 -14.37978 -13.77537 -13.51893 -13.37466 -13.05556 -12.88886 -12.80376 -12.63621 -12.19949 -12.13182 -11.97458 -11.89590 -11.84256 -11.61487 -11.44601 -10.94436 -10.78008 -10.42593 -9.29204 -8.31329 -6.36051 1.35752 1.38342 1.51343 2.35797 2.81559 3.04396 3.19319 3.69581 3.86920 3.93758 4.10356 4.16610 4.33154 4.35773 4.41122 4.45688 4.50878 4.57425 4.62749 4.83297 4.87477 4.93603 4.98520 5.01458 5.07882 5.16377 5.19786 5.28206 5.31856 5.38943 5.48066 5.62234 6.13676 6.23607 6.34125 6.50118 6.72443 7.29099 8.85382 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045428 B = 0.005237 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.218429 B = 5345.280723 C = 5690.713877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.081 3.919 3 H 0.064 0.936 4 C -0.129 4.129 5 C 0.083 3.917 6 N -0.688 5.688 7 C 0.089 3.911 8 C -0.005 4.005 9 C -0.535 4.535 10 H 0.032 0.968 11 C 0.006 3.994 12 N -0.951 5.951 13 Si 0.954 3.046 14 H -0.266 1.266 15 H -0.249 1.249 16 H -0.283 1.283 17 C -0.175 4.175 18 C 0.093 3.907 19 H 0.111 0.889 20 C -0.185 4.185 21 O -0.388 6.388 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.341 0.659 29 H 0.018 0.982 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.267 0.733 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.120 1.976 13.216 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.023 3.977 3 H 0.082 0.918 4 C -0.168 4.168 5 C -0.026 4.026 6 N -0.318 5.318 7 C -0.040 4.040 8 C -0.042 4.042 9 C -0.573 4.573 10 H 0.050 0.950 11 C -0.191 4.191 12 N -0.591 5.591 13 Si 0.777 3.223 14 H -0.191 1.191 15 H -0.172 1.172 16 H -0.209 1.209 17 C -0.214 4.214 18 C 0.035 3.965 19 H 0.129 0.871 20 C -0.242 4.242 21 O -0.308 6.308 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.160 0.840 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.397 2.294 12.754 21.693 hybrid contribution 1.241 -0.732 -0.139 1.448 sum -16.156 1.562 12.614 20.557 Atomic orbital electron populations 1.21756 0.91733 1.03010 1.03220 1.22221 0.95962 0.95332 0.84186 0.91822 1.22165 0.93939 1.01989 0.98659 1.21698 0.95804 0.97498 0.87650 1.60620 1.22675 1.09987 1.38480 1.21628 0.87180 0.98974 0.96240 1.19440 0.93982 0.95644 0.95179 1.21404 0.99541 1.21840 1.14521 0.95005 1.25994 0.95348 0.99407 0.98313 1.70066 1.13924 1.44917 1.30206 0.85603 0.80080 0.79072 0.77547 1.19067 1.17217 1.20899 1.22887 1.01202 1.00719 0.96627 1.22133 0.80441 0.95902 0.98055 0.87094 1.22442 1.02105 0.96861 1.02777 1.87941 1.21088 1.78072 1.43666 0.92133 0.91455 0.89726 0.90393 0.91448 0.91037 0.84048 0.96413 0.92811 0.95966 0.96408 0.92407 0.91059 0.91571 0.90915 0.91228 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.57 71.98 0.69 -1.56 16 2 C 0.08 1.63 2.94 30.62 0.09 1.72 16 3 H 0.06 1.24 6.34 -2.39 -0.02 1.22 16 4 C -0.13 -2.96 5.03 30.68 0.15 -2.80 16 5 C 0.08 2.22 2.24 45.04 0.10 2.32 16 6 N -0.69 -22.29 6.26 -490.96 -3.07 -25.36 16 7 C 0.09 3.55 5.43 86.30 0.47 4.02 16 8 C 0.00 -0.22 4.30 29.85 0.13 -0.09 16 9 C -0.53 -31.31 9.66 25.60 0.25 -31.07 16 10 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 11 C 0.01 0.37 5.47 84.66 0.46 0.84 16 12 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 13 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 C -0.17 -4.20 4.90 30.69 0.15 -4.05 16 18 C 0.09 1.94 3.91 30.63 0.12 2.06 16 19 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 20 C -0.18 -3.54 8.66 71.98 0.62 -2.91 16 21 O -0.39 -8.85 10.24 -148.98 -1.53 -10.38 16 22 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 2.00 6.28 -2.39 -0.02 1.99 16 28 H 0.34 10.47 8.44 -89.69 -0.76 9.71 16 29 H 0.02 0.72 7.54 -2.39 -0.02 0.70 16 30 H 0.05 2.24 8.06 -2.39 -0.02 2.22 16 31 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 32 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 33 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 34 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 35 H 0.07 1.69 7.57 -2.39 -0.02 1.68 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.18 4.98 -2.39 -0.01 1.17 16 Total: -1.00 -65.23 294.27 1.03 -64.20 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.21 Total: 16.13 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 3.23 Total: -31.52 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -2.77 Total: -85.20 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.53 Total: -10.38 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -65.23 1.03 -64.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308638119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.740 kcal (2) G-P(sol) polarization free energy of solvation -65.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds