Wall clock time and date at job start Sun Mar 29 2020 21:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53008 * 109.47089 * 240.00139 * 2 1 3 5 5 O 1.42898 * 109.46862 * 120.00346 * 2 1 3 6 6 C 1.42901 * 114.00258 * 59.99979 * 5 2 1 7 7 C 1.53785 * 113.69063 * 110.93650 * 6 5 2 8 8 C 1.53779 * 87.08093 * 139.99216 * 7 6 5 9 9 N 1.46900 * 113.69049 * 220.00567 * 8 7 6 10 10 C 1.46895 * 111.00037 * 252.53571 * 9 8 7 11 11 C 1.50701 * 109.47160 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00115 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99666 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00442 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47257 * 89.99418 * 15 13 11 17 17 H 1.48494 * 109.47538 * 209.99779 * 15 13 11 18 18 H 1.48503 * 109.46829 * 329.99910 * 15 13 11 19 19 C 1.53781 * 113.61413 * 208.47320 * 6 5 2 20 20 H 1.08994 * 109.47061 * 299.99871 * 1 2 3 21 21 H 1.09005 * 109.46847 * 59.99996 * 1 2 3 22 22 H 1.08995 * 109.46930 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46855 * 179.97438 * 3 2 1 24 24 H 1.08992 * 109.47444 * 299.99923 * 3 2 1 25 25 H 1.09008 * 109.46871 * 59.99957 * 3 2 1 26 26 H 1.09000 * 109.47008 * 299.99853 * 4 2 1 27 27 H 1.08995 * 109.46667 * 60.00376 * 4 2 1 28 28 H 1.09001 * 109.46368 * 180.02562 * 4 2 1 29 29 H 1.09002 * 112.84974 * 339.66626 * 6 5 2 30 30 H 1.09003 * 113.60734 * 254.54335 * 7 6 5 31 31 H 1.08996 * 113.61146 * 25.43833 * 7 6 5 32 32 H 1.09003 * 113.61186 * 89.11185 * 8 7 6 33 33 H 1.00901 * 111.00069 * 128.58311 * 9 8 7 34 34 H 1.08999 * 109.47315 * 300.00403 * 10 9 8 35 35 H 1.09002 * 109.47268 * 59.99916 * 10 9 8 36 36 H 0.97006 * 119.99813 * 180.02562 * 14 13 11 37 37 H 1.09005 * 113.61302 * 334.47944 * 19 6 5 38 38 H 1.08993 * 113.62030 * 105.38790 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.7260 -3.0503 1.0835 8 6 2.0753 -3.8651 2.2138 9 7 3.0429 -4.4572 3.1471 10 6 3.1382 -5.9104 2.9549 11 6 4.1384 -6.4811 3.9270 12 1 4.6515 -5.8295 4.6187 13 6 4.3974 -7.8353 3.9341 14 7 5.2699 -8.3334 4.7828 15 14 3.5093 -8.9625 2.7383 16 1 4.2954 -9.0706 1.4830 17 1 3.3592 -10.3092 3.3458 18 1 2.1672 -8.4038 2.4352 19 6 1.4690 -2.5424 2.7117 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6768 1.9563 -0.8899 25 1 1.6767 1.9563 0.8901 26 1 1.6768 -1.7489 -1.2493 27 1 1.6768 -0.2073 -2.1392 28 1 3.1301 -0.7216 -1.2490 29 1 0.7074 -2.2518 0.6547 30 1 2.7122 -3.5551 0.1175 31 1 3.7079 -2.6533 1.3408 32 1 1.3321 -4.5814 1.8635 33 1 2.8074 -4.2334 4.1023 34 1 2.1626 -6.3645 3.1281 35 1 3.4614 -6.1217 1.9356 36 1 5.4525 -9.2861 4.7875 37 1 2.1075 -2.0066 3.4142 38 1 0.4407 -2.6373 3.0603 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308674309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:12 Heat of formation + Delta-G solvation = -34.589330 kcal Electronic energy + Delta-G solvation = -16022.136996 eV Core-core repulsion = 13479.067884 eV Total energy + Delta-G solvation = -2543.069113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72464 -37.43735 -34.06736 -32.75434 -31.62048 -27.73700 -27.57006 -26.94359 -25.34937 -23.08619 -21.11305 -19.91534 -19.31237 -16.95481 -16.58422 -15.47601 -15.11229 -14.87169 -14.64768 -13.85777 -13.72785 -13.29941 -13.01208 -12.58269 -12.44006 -12.14481 -12.09433 -12.02759 -11.88917 -11.85415 -11.36789 -11.18901 -10.99601 -10.62871 -10.47633 -10.23124 -10.15805 -9.73743 -9.29641 -9.21832 -8.57849 -7.45365 -6.04505 -4.02292 3.29507 3.36341 3.38563 3.69003 4.43003 4.64622 4.68205 4.86051 4.89843 4.95994 5.01790 5.17740 5.23490 5.28920 5.34201 5.40123 5.54626 5.58849 5.65633 5.70601 5.71998 5.88185 5.94485 6.10313 6.11540 6.13968 6.27133 6.49039 6.55113 6.83312 7.03861 7.44706 7.64018 7.94943 8.36678 8.67377 9.03948 9.57556 11.08879 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055563 B = 0.004754 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.811788 B = 5887.996622 C = 6010.598786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.176 4.176 5 O -0.360 6.360 6 C 0.060 3.940 7 C -0.138 4.138 8 C 0.059 3.941 9 N -0.665 5.665 10 C 0.163 3.837 11 C -0.516 4.516 12 H 0.079 0.921 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.268 1.268 19 C -0.138 4.138 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.338 0.662 34 H -0.016 1.016 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.096 0.904 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.740 16.126 -11.189 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.064 3.936 3 C -0.194 4.194 4 C -0.233 4.233 5 O -0.279 6.279 6 C 0.002 3.998 7 C -0.177 4.177 8 C -0.052 4.052 9 N -0.296 5.296 10 C 0.035 3.965 11 C -0.554 4.554 12 H 0.097 0.903 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.706 3.294 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.193 1.193 19 C -0.176 4.176 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.156 0.844 34 H 0.001 0.999 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.992 16.169 -11.384 22.155 hybrid contribution -1.391 -1.256 -0.465 1.930 sum -11.382 14.913 -11.848 22.189 Atomic orbital electron populations 1.22462 0.96104 1.02435 1.02539 1.21470 0.92806 0.93153 0.86126 1.21748 1.02050 0.93524 1.02116 1.22463 1.02446 1.00889 0.97512 1.88048 1.73817 1.23906 1.42158 1.23549 0.97315 0.81311 0.97655 1.23603 0.99683 0.96100 0.98310 1.22704 0.93542 0.93353 0.95601 1.60550 1.47432 1.14017 1.07559 1.20050 0.95362 0.83642 0.97441 1.21083 1.22659 0.93094 1.18585 0.90274 1.24911 0.94945 0.97988 0.95512 1.69906 1.34117 1.13159 1.36795 0.86814 0.80718 0.80255 0.81661 1.20148 1.21216 1.19332 1.23477 1.00969 0.96691 0.96462 0.91787 0.91789 0.92181 0.91763 0.91483 0.91943 0.92163 0.92034 0.91599 0.89833 0.92331 0.88562 0.91903 0.84405 0.99866 0.96042 0.92668 0.88583 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.38 37.16 0.31 -1.29 16 2 C 0.10 1.09 1.12 -90.61 -0.10 0.99 16 3 C -0.14 -1.24 8.84 37.16 0.33 -0.91 16 4 C -0.18 -1.73 8.36 37.16 0.31 -1.42 16 5 O -0.36 -4.91 10.00 -35.23 -0.35 -5.26 16 6 C 0.06 0.80 2.80 -25.92 -0.07 0.73 16 7 C -0.14 -2.17 7.64 -25.92 -0.20 -2.37 16 8 C 0.06 1.02 4.14 -66.90 -0.28 0.74 16 9 N -0.66 -14.11 6.55 -107.13 -0.70 -14.81 16 10 C 0.16 4.05 4.35 -4.98 -0.02 4.03 16 11 C -0.52 -15.05 9.87 -34.44 -0.34 -15.39 16 12 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 15 Si 0.88 21.86 27.47 -169.99 -4.67 17.20 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 19 C -0.14 -1.99 7.48 -25.92 -0.19 -2.18 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.55 6.23 -51.93 -0.32 0.22 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.06 0.62 7.01 -51.93 -0.36 0.25 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.99 5.59 -51.93 -0.29 0.70 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 32 H 0.06 1.08 7.87 -51.93 -0.41 0.67 16 33 H 0.34 6.92 8.54 -39.29 -0.34 6.59 16 34 H -0.02 -0.40 7.19 -51.93 -0.37 -0.78 16 35 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -31.08 303.11 -7.46 -38.54 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.73 Total: 2.19 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.35 Total: -15.16 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.07 Total: -42.08 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.35 Total: -5.26 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.08 -7.46 -38.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308674309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.954 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds