Wall clock time and date at job start Sun Mar 29 2020 21:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53008 * 109.47089 * 240.00139 * 2 1 3 5 5 O 1.42898 * 109.46862 * 120.00346 * 2 1 3 6 6 C 1.42901 * 114.00258 * 59.99979 * 5 2 1 7 7 C 1.53785 * 113.69063 * 110.93650 * 6 5 2 8 8 C 1.53779 * 87.08093 * 139.99216 * 7 6 5 9 9 N 1.46900 * 113.69049 * 220.00567 * 8 7 6 10 10 C 1.46895 * 111.00037 * 252.53571 * 9 8 7 11 11 C 1.50701 * 109.47160 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00115 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99666 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00442 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47257 * 89.99418 * 15 13 11 17 17 H 1.48494 * 109.47538 * 209.99779 * 15 13 11 18 18 H 1.48503 * 109.46829 * 329.99910 * 15 13 11 19 19 C 1.53781 * 113.61413 * 208.47320 * 6 5 2 20 20 H 1.08994 * 109.47061 * 299.99871 * 1 2 3 21 21 H 1.09005 * 109.46847 * 59.99996 * 1 2 3 22 22 H 1.08995 * 109.46930 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46855 * 179.97438 * 3 2 1 24 24 H 1.08992 * 109.47444 * 299.99923 * 3 2 1 25 25 H 1.09008 * 109.46871 * 59.99957 * 3 2 1 26 26 H 1.09000 * 109.47008 * 299.99853 * 4 2 1 27 27 H 1.08995 * 109.46667 * 60.00376 * 4 2 1 28 28 H 1.09001 * 109.46368 * 180.02562 * 4 2 1 29 29 H 1.09002 * 112.84974 * 339.66626 * 6 5 2 30 30 H 1.09003 * 113.60734 * 254.54335 * 7 6 5 31 31 H 1.08996 * 113.61146 * 25.43833 * 7 6 5 32 32 H 1.09003 * 113.61186 * 89.11185 * 8 7 6 33 33 H 1.00901 * 111.00069 * 128.58311 * 9 8 7 34 34 H 1.08999 * 109.47315 * 300.00403 * 10 9 8 35 35 H 1.09002 * 109.47268 * 59.99916 * 10 9 8 36 36 H 0.97006 * 119.99813 * 180.02562 * 14 13 11 37 37 H 1.09005 * 113.61302 * 334.47944 * 19 6 5 38 38 H 1.08993 * 113.62030 * 105.38790 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.7260 -3.0503 1.0835 8 6 2.0753 -3.8651 2.2138 9 7 3.0429 -4.4572 3.1471 10 6 3.1382 -5.9104 2.9549 11 6 4.1384 -6.4811 3.9270 12 1 4.6515 -5.8295 4.6187 13 6 4.3974 -7.8353 3.9341 14 7 5.2699 -8.3334 4.7828 15 14 3.5093 -8.9625 2.7383 16 1 4.2954 -9.0706 1.4830 17 1 3.3592 -10.3092 3.3458 18 1 2.1672 -8.4038 2.4352 19 6 1.4690 -2.5424 2.7117 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1301 1.4424 0.0005 24 1 1.6768 1.9563 -0.8899 25 1 1.6767 1.9563 0.8901 26 1 1.6768 -1.7489 -1.2493 27 1 1.6768 -0.2073 -2.1392 28 1 3.1301 -0.7216 -1.2490 29 1 0.7074 -2.2518 0.6547 30 1 2.7122 -3.5551 0.1175 31 1 3.7079 -2.6533 1.3408 32 1 1.3321 -4.5814 1.8635 33 1 2.8074 -4.2334 4.1023 34 1 2.1626 -6.3645 3.1281 35 1 3.4614 -6.1217 1.9356 36 1 5.4525 -9.2861 4.7875 37 1 2.1075 -2.0066 3.4142 38 1 0.4407 -2.6373 3.0603 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308674309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:12 Heat of formation + Delta-G solvation = -56.067482 kcal Electronic energy + Delta-G solvation = -16023.068359 eV Core-core repulsion = 13479.067884 eV Total energy + Delta-G solvation = -2544.000475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.79837 -38.57243 -35.79164 -34.22729 -33.25353 -29.11704 -28.30508 -28.26088 -26.54659 -24.49805 -22.98682 -20.87270 -20.55113 -18.90200 -17.72344 -16.80736 -16.52377 -16.12415 -15.93403 -15.48893 -14.86742 -14.63696 -14.27469 -14.02853 -13.78335 -13.31955 -13.23789 -12.98772 -12.89891 -12.71276 -12.68702 -12.60552 -12.27803 -12.06110 -11.96732 -11.69312 -11.41715 -11.33886 -11.17372 -10.82296 -10.29846 -9.13873 -8.31295 -6.36275 1.34122 1.35960 1.47001 2.33240 2.75454 3.02630 3.57305 3.69164 3.73281 3.92905 3.95510 4.01572 4.06294 4.16796 4.38585 4.67444 4.68415 4.74517 4.79241 4.83787 4.88509 4.90309 4.96555 4.98289 5.01805 5.06610 5.17376 5.27345 5.31980 5.39745 5.43124 5.53530 5.99892 6.49920 6.56801 6.66550 6.76393 7.28983 8.85654 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055563 B = 0.004754 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.811788 B = 5887.996622 C = 6010.598786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 C -0.137 4.137 4 C -0.174 4.174 5 O -0.381 6.381 6 C 0.077 3.923 7 C -0.140 4.140 8 C 0.049 3.951 9 N -0.678 5.678 10 C 0.176 3.824 11 C -0.532 4.532 12 H 0.035 0.965 13 C 0.007 3.993 14 N -0.948 5.948 15 Si 0.954 3.046 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.250 1.250 19 C -0.131 4.131 20 H 0.061 0.939 21 H 0.083 0.917 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.338 0.662 34 H -0.010 1.010 35 H 0.022 0.978 36 H 0.268 0.732 37 H 0.083 0.917 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 16.567 -13.371 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.054 3.946 3 C -0.194 4.194 4 C -0.232 4.232 5 O -0.301 6.301 6 C 0.019 3.981 7 C -0.179 4.179 8 C -0.062 4.062 9 N -0.308 5.308 10 C 0.047 3.953 11 C -0.570 4.570 12 H 0.053 0.947 13 C -0.190 4.190 14 N -0.588 5.588 15 Si 0.777 3.223 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.173 1.173 19 C -0.169 4.169 20 H 0.080 0.920 21 H 0.102 0.898 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.109 0.891 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.007 0.993 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.330 16.645 -13.573 24.765 hybrid contribution -0.593 -1.280 0.259 1.435 sum -12.924 15.365 -13.314 24.091 Atomic orbital electron populations 1.22435 0.94604 1.02723 1.03452 1.21778 0.94068 0.93515 0.85244 1.21783 1.01474 0.92927 1.03197 1.22455 1.01644 1.00913 0.98159 1.88030 1.74430 1.23791 1.43826 1.23379 0.96734 0.81072 0.96926 1.23568 0.99408 0.96857 0.98081 1.22876 0.93403 0.94379 0.95512 1.60457 1.49881 1.12008 1.08498 1.19784 0.94030 0.85680 0.95814 1.21368 1.23506 0.93177 1.18924 0.94656 1.25917 0.95742 0.99836 0.97543 1.70062 1.35958 1.13910 1.38901 0.85616 0.80061 0.77722 0.78914 1.19104 1.20446 1.17324 1.23395 1.01645 0.94715 0.97112 0.92029 0.89790 0.92147 0.92750 0.89107 0.92169 0.92526 0.89865 0.92893 0.87518 0.91470 0.90960 0.91016 0.84404 0.99283 0.96038 0.92297 0.89822 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 8.38 71.98 0.60 -2.00 16 2 C 0.09 1.74 1.12 -10.79 -0.01 1.73 16 3 C -0.14 -2.20 8.84 71.98 0.64 -1.56 16 4 C -0.17 -3.03 8.36 71.98 0.60 -2.43 16 5 O -0.38 -9.83 10.00 -148.98 -1.49 -11.32 16 6 C 0.08 1.91 2.80 31.12 0.09 2.00 16 7 C -0.14 -4.27 7.64 31.12 0.24 -4.03 16 8 C 0.05 1.60 4.14 45.44 0.19 1.79 16 9 N -0.68 -28.85 6.55 -492.85 -3.23 -32.08 16 10 C 0.18 8.65 4.35 85.56 0.37 9.02 16 11 C -0.53 -31.77 9.87 25.60 0.25 -31.51 16 12 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 13 C 0.01 0.42 5.47 84.65 0.46 0.88 16 14 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 15 Si 0.95 44.65 27.47 68.60 1.88 46.53 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 19 C -0.13 -3.55 7.48 31.12 0.23 -3.32 16 20 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 22 H 0.06 0.89 6.23 -2.39 -0.01 0.88 16 23 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.97 16 26 H 0.06 1.02 7.01 -2.39 -0.02 1.00 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.11 2.18 5.59 -2.39 -0.01 2.17 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.07 2.28 7.87 -2.39 -0.02 2.26 16 33 H 0.34 14.10 8.54 -89.69 -0.77 13.33 16 34 H -0.01 -0.50 7.19 -2.39 -0.02 -0.52 16 35 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 36 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 37 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -67.92 303.11 1.32 -66.60 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.19 Total: 19.72 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 3.66 Total: -29.44 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -2.93 Total: -92.09 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.49 Total: -11.32 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -67.92 1.32 -66.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308674309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.528 kcal (2) G-P(sol) polarization free energy of solvation -67.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds