Wall clock time and date at job start Sun Mar 29 2020 22:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47402 * 2 1 4 4 O 1.42896 * 109.47132 * 180.81024 * 3 2 1 5 5 N 1.46500 * 109.47243 * 240.00194 * 2 1 3 6 6 C 1.36932 * 120.00159 * 59.99795 * 5 2 1 7 7 H 1.08001 * 120.00358 * 0.02562 * 6 5 2 8 8 C 1.38813 * 119.99831 * 180.02562 * 6 5 2 9 9 N 1.31612 * 120.00303 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99950 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47114 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47363 * 120.00002 * 10 8 6 13 13 H 1.48503 * 109.47060 * 240.00261 * 10 8 6 14 14 C 1.52997 * 109.47285 * 119.99932 * 2 1 3 15 15 C 1.53009 * 109.47169 * 58.05543 * 14 2 1 16 16 C 1.52992 * 109.47197 * 180.02562 * 15 14 2 17 17 C 1.53001 * 109.47317 * 59.99996 * 16 15 14 18 18 C 1.52999 * 109.47329 * 299.99962 * 17 16 15 19 19 C 1.52998 * 109.47201 * 298.06064 * 14 2 1 20 20 H 1.09008 * 109.46697 * 60.00033 * 1 2 3 21 21 H 1.08995 * 109.47416 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47194 * 300.00199 * 1 2 3 23 23 H 1.09007 * 109.46847 * 60.80917 * 3 2 1 24 24 H 1.09002 * 109.46746 * 300.81617 * 3 2 1 25 25 H 0.96698 * 113.99783 * 180.02562 * 4 3 2 26 26 H 0.97005 * 119.99958 * 240.00037 * 5 2 1 27 27 H 0.97001 * 120.00406 * 180.02562 * 9 8 6 28 28 H 1.08997 * 109.47549 * 178.05500 * 14 2 1 29 29 H 1.09006 * 109.46630 * 300.00380 * 15 14 2 30 30 H 1.09005 * 109.46793 * 60.00028 * 15 14 2 31 31 H 1.08997 * 109.47253 * 299.99794 * 16 15 14 32 32 H 1.08999 * 109.47018 * 180.02562 * 16 15 14 33 33 H 1.08999 * 109.46999 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.46883 * 60.00155 * 17 16 15 35 35 H 1.08997 * 109.46819 * 299.99943 * 18 17 16 36 36 H 1.08997 * 109.47286 * 179.97438 * 18 17 16 37 37 H 1.08999 * 109.46807 * 299.99693 * 19 14 2 38 38 H 1.09006 * 109.47444 * 59.99102 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 -0.0191 5 7 2.0183 -0.6906 -1.1962 6 6 1.6875 -0.2228 -2.4399 7 1 1.0669 0.6556 -2.5390 8 6 2.1498 -0.8774 -3.5732 9 7 2.9057 -1.9481 -3.4525 10 14 1.6992 -0.2389 -5.2699 11 1 0.8458 0.9688 -5.1337 12 1 2.9369 0.1103 -6.0123 13 1 0.9559 -1.2884 -6.0125 14 6 2.0400 -0.7212 1.2492 15 6 1.4904 -2.1490 1.2740 16 6 1.9999 -2.8700 2.5235 17 6 1.5298 -2.1208 3.7719 18 6 2.0793 -0.6932 3.7473 19 6 1.5703 0.0277 2.4980 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.6886 1.9522 0.8972 24 1 1.6648 1.9605 -0.8826 25 1 3.8622 2.3259 -0.0197 26 1 2.5760 -1.4793 -1.1072 27 1 3.2291 -2.4054 -4.2445 28 1 3.1294 -0.7515 1.2320 29 1 0.4009 -2.1186 1.2912 30 1 1.8250 -2.6825 0.3843 31 1 3.0893 -2.9003 2.5066 32 1 1.6087 -3.8872 2.5408 33 1 1.8924 -2.6348 4.6621 34 1 0.4403 -2.0906 3.7888 35 1 3.1687 -0.7235 3.7305 36 1 1.7440 -0.1594 4.6365 37 1 1.9618 1.0448 2.4804 38 1 0.4808 0.0580 2.5152 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308687229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:05 Heat of formation + Delta-G solvation = -62.179274 kcal Electronic energy + Delta-G solvation = -17182.540888 eV Core-core repulsion = 14638.275385 eV Total energy + Delta-G solvation = -2544.265502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.16869 -36.27975 -34.46768 -32.27025 -30.47429 -29.47470 -27.87140 -25.47465 -24.12018 -22.17955 -21.93997 -19.64068 -17.95058 -17.10897 -16.48466 -15.36192 -14.71724 -14.12191 -13.91873 -13.80633 -13.76326 -13.23686 -12.91009 -12.10328 -11.92510 -11.79685 -11.67823 -11.52060 -11.24931 -10.92417 -10.78369 -10.70665 -10.53265 -10.36674 -10.04150 -9.81555 -9.75633 -9.39703 -9.26301 -9.03895 -8.75853 -6.80821 -5.64962 -2.90949 3.48019 3.52803 3.55447 4.65648 5.01209 5.02018 5.10239 5.14687 5.52070 5.53133 5.65947 5.70867 5.77014 5.87167 5.90371 5.93787 5.96168 6.10970 6.14702 6.27828 6.29855 6.33614 6.41131 6.48685 6.51997 6.58143 6.67959 6.69933 6.88535 6.98332 7.08482 7.25412 7.78480 8.39335 8.53583 9.64961 10.25145 10.60536 11.58259 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035676 B = 0.008177 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.651911 B = 3423.590456 C = 3741.303672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.207 3.793 3 C 0.070 3.930 4 O -0.552 6.552 5 N -0.707 5.707 6 C -0.223 4.223 7 H 0.067 0.933 8 C -0.016 4.016 9 N -0.932 5.932 10 Si 0.901 3.099 11 H -0.283 1.283 12 H -0.294 1.294 13 H -0.294 1.294 14 C -0.075 4.075 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.114 4.114 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.039 0.961 23 H 0.025 0.975 24 H 0.038 0.962 25 H 0.358 0.642 26 H 0.385 0.615 27 H 0.252 0.748 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.014 3.470 13.358 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.115 3.885 3 C -0.010 4.010 4 O -0.354 6.354 5 N -0.348 5.348 6 C -0.355 4.355 7 H 0.085 0.915 8 C -0.212 4.212 9 N -0.582 5.582 10 Si 0.733 3.267 11 H -0.208 1.208 12 H -0.221 1.221 13 H -0.221 1.221 14 C -0.094 4.094 15 C -0.151 4.151 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.151 4.151 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.058 0.942 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.201 0.799 26 H 0.220 0.780 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.176 2.884 13.193 13.873 hybrid contribution 0.019 0.799 -1.098 1.358 sum -3.158 3.682 12.095 13.032 Atomic orbital electron populations 1.22296 0.97437 1.01737 0.99898 1.19554 0.91626 0.89544 0.87821 1.22854 0.81063 0.99779 0.97349 1.86621 1.19907 1.31361 1.97534 1.42338 1.60333 1.32533 0.99572 1.19146 1.24621 1.08088 0.83628 0.91533 1.24668 1.00857 0.98205 0.97434 1.69667 1.39708 1.20962 1.27834 0.86202 0.77378 0.77740 0.85387 1.20833 1.22092 1.22097 1.21137 1.00756 0.94252 0.93241 1.21619 1.00338 0.95735 0.97414 1.21551 1.00759 0.98376 0.95007 1.21521 1.00407 0.95867 0.97638 1.21507 1.00598 0.95715 0.97625 1.21666 1.00480 0.98784 0.94208 0.92853 0.92181 0.94191 0.95672 0.94355 0.79874 0.78011 0.93813 0.90763 0.92186 0.90978 0.92304 0.92654 0.92888 0.92392 0.92253 0.92838 0.92217 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 7.73 37.15 0.29 -2.55 16 2 C 0.21 4.13 0.39 -131.82 -0.05 4.07 16 3 C 0.07 1.31 5.38 37.16 0.20 1.51 16 4 O -0.55 -10.77 12.90 -35.23 -0.45 -11.22 16 5 N -0.71 -17.83 4.70 -47.23 -0.22 -18.06 16 6 C -0.22 -6.21 8.68 -15.06 -0.13 -6.34 16 7 H 0.07 1.81 6.70 -52.49 -0.35 1.46 16 8 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 9 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 10 Si 0.90 22.85 29.55 -169.99 -5.02 17.83 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 14 C -0.08 -1.31 1.43 -90.62 -0.13 -1.44 16 15 C -0.11 -1.91 4.65 -26.73 -0.12 -2.03 16 16 C -0.12 -1.68 5.92 -26.73 -0.16 -1.84 16 17 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 18 C -0.12 -1.46 5.92 -26.76 -0.16 -1.62 16 19 C -0.11 -1.62 4.49 -26.76 -0.12 -1.74 16 20 H 0.05 1.05 7.27 -51.92 -0.38 0.67 16 21 H 0.06 1.12 6.39 -51.93 -0.33 0.79 16 22 H 0.04 0.61 6.48 -51.93 -0.34 0.28 16 23 H 0.03 0.40 6.35 -51.92 -0.33 0.07 16 24 H 0.04 0.77 7.30 -51.93 -0.38 0.40 16 25 H 0.36 5.17 9.12 45.56 0.42 5.58 16 26 H 0.39 10.56 6.64 -40.82 -0.27 10.29 16 27 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.07 1.46 7.76 -51.93 -0.40 1.06 16 29 H 0.06 0.98 6.39 -51.93 -0.33 0.65 16 30 H 0.07 1.42 6.98 -51.93 -0.36 1.05 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.85 6.37 -51.93 -0.33 0.52 16 38 H 0.06 0.83 6.48 -51.93 -0.34 0.50 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -31.15 284.94 -6.72 -37.86 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.40 Total: 11.41 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.64 Total: -14.13 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.50 Total: -46.04 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.45 Total: -11.22 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.15 -6.72 -37.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308687229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.315 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds