Wall clock time and date at job start Sun Mar 29 2020 22:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47402 * 2 1 4 4 O 1.42896 * 109.47132 * 180.81024 * 3 2 1 5 5 N 1.46500 * 109.47243 * 240.00194 * 2 1 3 6 6 C 1.36932 * 120.00159 * 59.99795 * 5 2 1 7 7 H 1.08001 * 120.00358 * 0.02562 * 6 5 2 8 8 C 1.38813 * 119.99831 * 180.02562 * 6 5 2 9 9 N 1.31612 * 120.00303 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99950 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47114 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47363 * 120.00002 * 10 8 6 13 13 H 1.48503 * 109.47060 * 240.00261 * 10 8 6 14 14 C 1.52997 * 109.47285 * 119.99932 * 2 1 3 15 15 C 1.53009 * 109.47169 * 58.05543 * 14 2 1 16 16 C 1.52992 * 109.47197 * 180.02562 * 15 14 2 17 17 C 1.53001 * 109.47317 * 59.99996 * 16 15 14 18 18 C 1.52999 * 109.47329 * 299.99962 * 17 16 15 19 19 C 1.52998 * 109.47201 * 298.06064 * 14 2 1 20 20 H 1.09008 * 109.46697 * 60.00033 * 1 2 3 21 21 H 1.08995 * 109.47416 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47194 * 300.00199 * 1 2 3 23 23 H 1.09007 * 109.46847 * 60.80917 * 3 2 1 24 24 H 1.09002 * 109.46746 * 300.81617 * 3 2 1 25 25 H 0.96698 * 113.99783 * 180.02562 * 4 3 2 26 26 H 0.97005 * 119.99958 * 240.00037 * 5 2 1 27 27 H 0.97001 * 120.00406 * 180.02562 * 9 8 6 28 28 H 1.08997 * 109.47549 * 178.05500 * 14 2 1 29 29 H 1.09006 * 109.46630 * 300.00380 * 15 14 2 30 30 H 1.09005 * 109.46793 * 60.00028 * 15 14 2 31 31 H 1.08997 * 109.47253 * 299.99794 * 16 15 14 32 32 H 1.08999 * 109.47018 * 180.02562 * 16 15 14 33 33 H 1.08999 * 109.46999 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.46883 * 60.00155 * 17 16 15 35 35 H 1.08997 * 109.46819 * 299.99943 * 18 17 16 36 36 H 1.08997 * 109.47286 * 179.97438 * 18 17 16 37 37 H 1.08999 * 109.46807 * 299.99693 * 19 14 2 38 38 H 1.09006 * 109.47444 * 59.99102 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 -0.0191 5 7 2.0183 -0.6906 -1.1962 6 6 1.6875 -0.2228 -2.4399 7 1 1.0669 0.6556 -2.5390 8 6 2.1498 -0.8774 -3.5732 9 7 2.9057 -1.9481 -3.4525 10 14 1.6992 -0.2389 -5.2699 11 1 0.8458 0.9688 -5.1337 12 1 2.9369 0.1103 -6.0123 13 1 0.9559 -1.2884 -6.0125 14 6 2.0400 -0.7212 1.2492 15 6 1.4904 -2.1490 1.2740 16 6 1.9999 -2.8700 2.5235 17 6 1.5298 -2.1208 3.7719 18 6 2.0793 -0.6932 3.7473 19 6 1.5703 0.0277 2.4980 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.6886 1.9522 0.8972 24 1 1.6648 1.9605 -0.8826 25 1 3.8622 2.3259 -0.0197 26 1 2.5760 -1.4793 -1.1072 27 1 3.2291 -2.4054 -4.2445 28 1 3.1294 -0.7515 1.2320 29 1 0.4009 -2.1186 1.2912 30 1 1.8250 -2.6825 0.3843 31 1 3.0893 -2.9003 2.5066 32 1 1.6087 -3.8872 2.5408 33 1 1.8924 -2.6348 4.6621 34 1 0.4403 -2.0906 3.7888 35 1 3.1687 -0.7235 3.7305 36 1 1.7440 -0.1594 4.6365 37 1 1.9618 1.0448 2.4804 38 1 0.4808 0.0580 2.5152 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308687229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:05 Heat of formation + Delta-G solvation = -84.205297 kcal Electronic energy + Delta-G solvation = -17183.496008 eV Core-core repulsion = 14638.275385 eV Total energy + Delta-G solvation = -2545.220622 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56329 -37.67631 -36.14498 -34.14016 -31.72527 -31.13794 -29.40955 -27.00024 -26.04633 -23.59474 -23.15701 -20.86971 -19.46499 -19.12408 -18.01391 -16.97384 -16.35356 -15.63213 -15.54746 -15.11985 -14.96443 -14.73759 -14.61018 -13.66807 -13.33873 -13.17826 -13.03008 -12.94812 -12.85149 -12.77609 -12.41888 -12.30934 -11.89285 -11.84713 -11.62441 -11.44163 -11.16366 -10.95304 -10.80732 -10.53585 -10.52629 -8.88189 -7.85724 -5.10466 1.45341 1.46351 1.55337 2.59457 3.46644 3.60538 3.82112 3.88980 3.96479 4.09486 4.34477 4.41868 4.48510 4.57503 4.65608 4.70167 4.74414 4.81950 4.87101 4.90905 4.96294 5.05958 5.12067 5.25507 5.30743 5.33344 5.37078 5.41742 5.53300 5.54439 5.59685 5.70142 5.82618 6.35994 7.11911 7.41918 8.22378 8.44841 9.38968 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035676 B = 0.008177 C = 0.007482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.651911 B = 3423.590456 C = 3741.303672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.191 3.809 3 C 0.073 3.927 4 O -0.577 6.577 5 N -0.719 5.719 6 C -0.210 4.210 7 H 0.072 0.928 8 C -0.085 4.085 9 N -0.973 5.973 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.299 1.299 13 H -0.297 1.297 14 C -0.066 4.066 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.108 4.108 20 H 0.036 0.964 21 H 0.051 0.949 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.020 0.980 25 H 0.379 0.621 26 H 0.369 0.631 27 H 0.245 0.755 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 4.858 15.408 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.101 3.899 3 C -0.007 4.007 4 O -0.382 6.382 5 N -0.358 5.358 6 C -0.343 4.343 7 H 0.090 0.910 8 C -0.276 4.276 9 N -0.626 5.626 10 Si 0.795 3.205 11 H -0.191 1.191 12 H -0.227 1.227 13 H -0.224 1.224 14 C -0.085 4.085 15 C -0.147 4.147 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.146 4.146 20 H 0.055 0.945 21 H 0.070 0.930 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.039 0.961 25 H 0.226 0.774 26 H 0.201 0.799 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.473 4.332 15.283 16.503 hybrid contribution 0.421 0.402 -1.653 1.752 sum -4.052 4.734 13.630 14.987 Atomic orbital electron populations 1.22195 0.95867 1.01563 1.00940 1.19998 0.92676 0.90284 0.86948 1.22781 0.80873 0.98667 0.98344 1.86576 1.20399 1.33651 1.97601 1.42564 1.60173 1.32412 1.00672 1.19486 1.22802 1.07231 0.84758 0.90999 1.25441 1.02071 0.99061 1.01064 1.69837 1.41879 1.22696 1.28163 0.85187 0.76835 0.77489 0.81022 1.19137 1.22690 1.22431 1.21026 0.98854 0.94785 0.93832 1.21543 1.00531 0.95465 0.97209 1.21531 1.00188 0.98948 0.94806 1.21508 1.00999 0.95528 0.96934 1.21507 1.00210 0.95917 0.97591 1.21637 1.01198 0.98647 0.93075 0.94460 0.92996 0.90404 0.91763 0.96126 0.77404 0.79923 0.94577 0.93696 0.91604 0.95057 0.93235 0.91796 0.90904 0.91403 0.92982 0.90201 0.91704 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 7.73 71.98 0.56 -4.60 16 2 C 0.19 7.50 0.39 3.60 0.00 7.50 16 3 C 0.07 2.63 5.38 71.98 0.39 3.02 16 4 O -0.58 -22.00 12.90 -148.98 -1.92 -23.93 16 5 N -0.72 -37.09 4.70 -303.35 -1.43 -38.51 16 6 C -0.21 -11.84 8.68 84.03 0.73 -11.11 16 7 H 0.07 3.90 6.70 -2.91 -0.02 3.88 16 8 C -0.09 -5.05 5.50 84.86 0.47 -4.59 16 9 N -0.97 -62.02 13.06 21.65 0.28 -61.73 16 10 Si 0.96 47.84 29.55 68.60 2.03 49.87 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 13 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 14 C -0.07 -2.25 1.43 -10.79 -0.02 -2.27 16 15 C -0.11 -3.69 4.65 30.59 0.14 -3.55 16 16 C -0.12 -3.16 5.92 30.59 0.18 -2.98 16 17 C -0.11 -2.37 5.92 30.59 0.18 -2.19 16 18 C -0.11 -2.46 5.92 30.58 0.18 -2.28 16 19 C -0.11 -2.73 4.49 30.58 0.14 -2.59 16 20 H 0.04 1.40 7.27 -2.38 -0.02 1.39 16 21 H 0.05 1.89 6.39 -2.39 -0.02 1.87 16 22 H 0.08 2.12 6.48 -2.39 -0.02 2.11 16 23 H 0.06 1.83 6.35 -2.38 -0.02 1.81 16 24 H 0.02 0.81 7.30 -2.39 -0.02 0.79 16 25 H 0.38 10.42 9.12 -74.06 -0.68 9.75 16 26 H 0.37 21.16 6.64 -92.70 -0.62 20.55 16 27 H 0.25 15.23 8.31 -92.71 -0.77 14.45 16 28 H 0.04 1.79 7.76 -2.39 -0.02 1.77 16 29 H 0.07 2.10 6.39 -2.38 -0.02 2.08 16 30 H 0.03 1.28 6.98 -2.38 -0.02 1.26 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.59 6.37 -2.39 -0.02 1.57 16 38 H 0.07 1.69 6.48 -2.38 -0.02 1.68 16 Total: -1.00 -68.53 284.94 1.67 -66.85 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.24 Total: 33.08 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 2.95 Total: -25.63 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -1.14 Total: -100.25 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.92 Total: -23.93 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -68.53 1.67 -66.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308687229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.351 kcal (2) G-P(sol) polarization free energy of solvation -68.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds