Wall clock time and date at job start Sun Mar 29 2020 22:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42895 * 109.47606 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 6 6 C 1.36929 * 119.99803 * 300.00107 * 5 2 1 7 7 H 1.08008 * 120.00370 * 359.97438 * 6 5 2 8 8 C 1.38815 * 120.00035 * 179.97438 * 6 5 2 9 9 N 1.31619 * 119.99892 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99923 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47174 * 89.99720 * 10 8 6 12 12 H 1.48499 * 109.46981 * 209.99615 * 10 8 6 13 13 H 1.48494 * 109.46800 * 329.99672 * 10 8 6 14 14 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 15 15 C 1.53003 * 109.47015 * 64.99921 * 14 2 1 16 16 C 1.53002 * 109.47365 * 180.02562 * 15 14 2 17 17 C 1.53002 * 109.46918 * 60.00425 * 16 15 14 18 18 C 1.53003 * 109.46755 * 299.99949 * 17 16 15 19 19 C 1.53002 * 109.47069 * 305.00469 * 14 2 1 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 0.96705 * 114.00563 * 180.02562 * 4 3 2 26 26 H 0.96999 * 120.00080 * 119.99592 * 5 2 1 27 27 H 0.97000 * 119.99521 * 179.97438 * 9 8 6 28 28 H 1.08994 * 109.47465 * 185.00197 * 14 2 1 29 29 H 1.08994 * 109.47229 * 300.00420 * 15 14 2 30 30 H 1.09000 * 109.46883 * 59.99966 * 15 14 2 31 31 H 1.08994 * 109.47265 * 300.00368 * 16 15 14 32 32 H 1.09000 * 109.47089 * 180.02562 * 16 15 14 33 33 H 1.08998 * 109.46954 * 180.02562 * 17 16 15 34 34 H 1.08994 * 109.47199 * 59.99902 * 17 16 15 35 35 H 1.08994 * 109.47229 * 299.99935 * 18 17 16 36 36 H 1.09000 * 109.46883 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47048 * 299.99452 * 19 14 2 38 38 H 1.08994 * 109.47199 * 59.99565 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 7 2.0184 -0.6907 1.1962 6 6 1.6876 -0.2229 2.4398 7 1 1.0669 0.6555 2.5390 8 6 2.1498 -0.8775 3.5733 9 7 1.8323 -0.4276 4.7687 10 14 3.2238 -2.3963 3.4018 11 1 4.6516 -1.9905 3.3570 12 1 3.0007 -3.2940 4.5635 13 1 2.8730 -3.1117 2.1488 14 6 2.0400 -0.7213 -1.2492 15 6 1.6352 0.0689 -2.4953 16 6 2.1447 -0.6526 -3.7446 17 6 1.5340 -2.0541 -3.8088 18 6 1.9388 -2.8442 -2.5627 19 6 1.4299 -2.1229 -1.3137 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.8624 2.3258 -0.0002 26 1 2.5760 -1.4793 1.1072 27 1 2.1550 -0.8853 5.5606 28 1 3.1263 -0.7995 -1.2056 29 1 0.5490 0.1472 -2.5390 30 1 2.0698 1.0675 -2.4494 31 1 3.2309 -0.7313 -3.7012 32 1 1.8567 -0.0895 -4.6323 33 1 1.8973 -2.5682 -4.6986 34 1 0.4478 -1.9754 -3.8522 35 1 3.0251 -2.9229 -2.5193 36 1 1.5042 -3.8427 -2.6086 37 1 1.7182 -2.6858 -0.4260 38 1 0.3436 -2.0446 -1.3573 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308687231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:07 Heat of formation + Delta-G solvation = -58.849769 kcal Electronic energy + Delta-G solvation = -17253.388746 eV Core-core repulsion = 14709.267622 eV Total energy + Delta-G solvation = -2544.121124 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.32000 -36.38349 -34.60047 -32.27423 -30.63095 -29.94195 -28.20560 -25.55737 -23.99954 -22.18304 -21.92266 -19.69966 -18.08636 -17.66592 -16.57066 -15.38305 -14.75772 -14.30259 -14.02985 -13.96588 -13.81834 -13.31414 -12.67078 -12.42554 -12.07468 -12.00726 -11.79329 -11.62264 -11.42447 -11.02835 -10.85419 -10.75065 -10.63803 -10.43958 -10.12469 -9.89170 -9.75384 -9.47931 -9.38627 -9.10073 -8.78455 -7.13699 -5.67509 -3.00008 3.45235 3.49720 3.52585 4.69088 4.86774 4.91101 4.98298 5.05119 5.30962 5.42268 5.54551 5.60760 5.66545 5.75385 5.77319 5.81956 5.84829 6.01264 6.05907 6.16515 6.19459 6.24686 6.34438 6.38702 6.41883 6.46291 6.53174 6.56262 6.74271 6.86248 6.89588 7.15219 8.06788 8.32728 8.52530 9.31529 10.05155 10.26649 11.51316 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.009545 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.676185 B = 2932.618023 C = 3343.580825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.213 3.787 3 C 0.071 3.929 4 O -0.557 6.557 5 N -0.734 5.734 6 C -0.228 4.228 7 H 0.088 0.912 8 C 0.001 3.999 9 N -0.939 5.939 10 Si 0.884 3.116 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.278 1.278 14 C -0.079 4.079 15 C -0.113 4.113 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.116 4.116 20 H 0.041 0.959 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.028 0.972 24 H 0.045 0.955 25 H 0.361 0.639 26 H 0.362 0.638 27 H 0.257 0.743 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 0.094 -16.751 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.121 3.879 3 C -0.009 4.009 4 O -0.359 6.359 5 N -0.376 5.376 6 C -0.358 4.358 7 H 0.106 0.894 8 C -0.194 4.194 9 N -0.588 5.588 10 Si 0.715 3.285 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.204 1.204 14 C -0.097 4.097 15 C -0.150 4.150 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.154 4.154 20 H 0.060 0.940 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.046 0.954 24 H 0.063 0.937 25 H 0.205 0.795 26 H 0.195 0.805 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.770 -0.452 -16.545 16.569 hybrid contribution 0.854 -0.403 0.161 0.958 sum 0.084 -0.854 -16.384 16.406 Atomic orbital electron populations 1.22264 0.96775 1.01868 1.00415 1.19519 0.91965 0.89645 0.86747 1.22811 0.80911 0.99265 0.97947 1.86556 1.20042 1.31747 1.97583 1.42689 1.61208 1.32272 1.01438 1.18960 1.25591 1.09575 0.81645 0.89411 1.24604 1.00656 0.98998 0.95113 1.69701 1.50330 1.42074 0.96699 0.86555 0.81277 0.84141 0.76571 1.21265 1.22101 1.20415 1.21188 1.00665 0.94257 0.93640 1.21657 1.00702 0.98771 0.93906 1.21521 1.00431 0.95816 0.97720 1.21519 1.00487 0.95926 0.97506 1.21550 1.00824 0.98298 0.95082 1.21652 1.00598 0.95939 0.97193 0.93988 0.92245 0.92185 0.95375 0.93679 0.79530 0.80466 0.93303 0.90810 0.92020 0.91895 0.92257 0.92666 0.92784 0.92250 0.92368 0.92583 0.91694 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 7.71 37.16 0.29 -2.48 16 2 C 0.21 4.09 0.40 -131.82 -0.05 4.04 16 3 C 0.07 1.30 5.29 37.15 0.20 1.49 16 4 O -0.56 -10.38 12.94 -35.23 -0.46 -10.84 16 5 N -0.73 -17.57 4.54 -47.23 -0.21 -17.78 16 6 C -0.23 -6.41 9.15 -15.06 -0.14 -6.54 16 7 H 0.09 2.63 6.92 -52.48 -0.36 2.26 16 8 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 9 N -0.94 -29.93 13.97 55.49 0.78 -29.15 16 10 Si 0.88 22.96 27.74 -169.99 -4.71 18.25 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 13 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 14 C -0.08 -1.29 1.38 -90.62 -0.12 -1.42 16 15 C -0.11 -1.52 4.47 -26.73 -0.12 -1.64 16 16 C -0.12 -1.38 5.92 -26.73 -0.16 -1.53 16 17 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 18 C -0.12 -1.56 5.92 -26.75 -0.16 -1.72 16 19 C -0.12 -1.82 4.58 -26.76 -0.12 -1.94 16 20 H 0.04 0.62 6.57 -51.93 -0.34 0.28 16 21 H 0.06 1.18 7.27 -51.93 -0.38 0.80 16 22 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 23 H 0.03 0.44 6.34 -51.93 -0.33 0.11 16 24 H 0.04 0.92 7.27 -51.93 -0.38 0.54 16 25 H 0.36 5.00 9.12 45.56 0.42 5.42 16 26 H 0.36 8.81 4.71 -40.82 -0.19 8.62 16 27 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 28 H 0.07 1.35 7.83 -51.93 -0.41 0.94 16 29 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 30 H 0.06 0.85 6.34 -51.93 -0.33 0.52 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.16 7.18 -51.93 -0.37 0.79 16 38 H 0.06 0.98 6.34 -51.93 -0.33 0.65 16 LS Contribution 282.13 15.07 4.25 4.25 Total: -1.00 -31.99 282.13 -6.38 -38.38 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.38 Total: 10.19 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.65 Total: -13.29 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.56 Total: -46.93 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.46 Total: -10.84 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.71 Total: 18.25 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.99 -6.38 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308687231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.473 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds