Wall clock time and date at job start Sun Mar 29 2020 22:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42895 * 109.47606 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 6 6 C 1.36929 * 119.99803 * 300.00107 * 5 2 1 7 7 H 1.08008 * 120.00370 * 359.97438 * 6 5 2 8 8 C 1.38815 * 120.00035 * 179.97438 * 6 5 2 9 9 N 1.31619 * 119.99892 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99923 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47174 * 89.99720 * 10 8 6 12 12 H 1.48499 * 109.46981 * 209.99615 * 10 8 6 13 13 H 1.48494 * 109.46800 * 329.99672 * 10 8 6 14 14 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 15 15 C 1.53003 * 109.47015 * 64.99921 * 14 2 1 16 16 C 1.53002 * 109.47365 * 180.02562 * 15 14 2 17 17 C 1.53002 * 109.46918 * 60.00425 * 16 15 14 18 18 C 1.53003 * 109.46755 * 299.99949 * 17 16 15 19 19 C 1.53002 * 109.47069 * 305.00469 * 14 2 1 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 0.96705 * 114.00563 * 180.02562 * 4 3 2 26 26 H 0.96999 * 120.00080 * 119.99592 * 5 2 1 27 27 H 0.97000 * 119.99521 * 179.97438 * 9 8 6 28 28 H 1.08994 * 109.47465 * 185.00197 * 14 2 1 29 29 H 1.08994 * 109.47229 * 300.00420 * 15 14 2 30 30 H 1.09000 * 109.46883 * 59.99966 * 15 14 2 31 31 H 1.08994 * 109.47265 * 300.00368 * 16 15 14 32 32 H 1.09000 * 109.47089 * 180.02562 * 16 15 14 33 33 H 1.08998 * 109.46954 * 180.02562 * 17 16 15 34 34 H 1.08994 * 109.47199 * 59.99902 * 17 16 15 35 35 H 1.08994 * 109.47229 * 299.99935 * 18 17 16 36 36 H 1.09000 * 109.46883 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47048 * 299.99452 * 19 14 2 38 38 H 1.08994 * 109.47199 * 59.99565 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 7 2.0184 -0.6907 1.1962 6 6 1.6876 -0.2229 2.4398 7 1 1.0669 0.6555 2.5390 8 6 2.1498 -0.8775 3.5733 9 7 1.8323 -0.4276 4.7687 10 14 3.2238 -2.3963 3.4018 11 1 4.6516 -1.9905 3.3570 12 1 3.0007 -3.2940 4.5635 13 1 2.8730 -3.1117 2.1488 14 6 2.0400 -0.7213 -1.2492 15 6 1.6352 0.0689 -2.4953 16 6 2.1447 -0.6526 -3.7446 17 6 1.5340 -2.0541 -3.8088 18 6 1.9388 -2.8442 -2.5627 19 6 1.4299 -2.1229 -1.3137 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.8624 2.3258 -0.0002 26 1 2.5760 -1.4793 1.1072 27 1 2.1550 -0.8853 5.5606 28 1 3.1263 -0.7995 -1.2056 29 1 0.5490 0.1472 -2.5390 30 1 2.0698 1.0675 -2.4494 31 1 3.2309 -0.7313 -3.7012 32 1 1.8567 -0.0895 -4.6323 33 1 1.8973 -2.5682 -4.6986 34 1 0.4478 -1.9754 -3.8522 35 1 3.0251 -2.9229 -2.5193 36 1 1.5042 -3.8427 -2.6086 37 1 1.7182 -2.6858 -0.4260 38 1 0.3436 -2.0446 -1.3573 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308687231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:06 Heat of formation + Delta-G solvation = -82.008072 kcal Electronic energy + Delta-G solvation = -17254.392965 eV Core-core repulsion = 14709.267622 eV Total energy + Delta-G solvation = -2545.125344 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.65222 -37.71681 -36.24489 -34.18920 -32.00401 -31.46002 -29.60479 -27.04596 -25.84466 -23.49405 -23.14522 -20.85881 -19.89599 -19.41341 -18.04174 -16.86447 -16.52651 -15.83041 -15.49973 -15.12226 -14.93325 -14.71110 -14.62258 -14.08690 -13.60601 -13.22312 -13.06139 -13.00003 -12.91775 -12.80010 -12.42051 -12.21204 -12.05048 -11.78546 -11.65766 -11.51987 -11.17461 -11.01179 -10.85164 -10.58683 -10.56795 -9.21683 -7.96836 -5.25526 1.35583 1.38954 1.44989 2.51286 3.34753 3.45766 3.68276 3.81979 3.93154 4.00561 4.31318 4.39334 4.46521 4.53352 4.62447 4.68205 4.70445 4.79244 4.85446 4.88569 4.91423 5.00445 5.08723 5.23511 5.28745 5.29993 5.35217 5.39442 5.49372 5.56655 5.61053 5.77349 5.83121 6.29019 7.06360 7.15422 7.94122 8.11998 9.25341 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029696 B = 0.009545 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.676185 B = 2932.618023 C = 3343.580825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.197 3.803 3 C 0.075 3.925 4 O -0.576 6.576 5 N -0.738 5.738 6 C -0.199 4.199 7 H 0.060 0.940 8 C -0.070 4.070 9 N -0.989 5.989 10 Si 0.947 3.053 11 H -0.288 1.288 12 H -0.298 1.298 13 H -0.257 1.257 14 C -0.069 4.069 15 C -0.108 4.108 16 C -0.115 4.115 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.116 4.116 20 H 0.079 0.921 21 H 0.030 0.970 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.014 0.986 25 H 0.381 0.619 26 H 0.360 0.640 27 H 0.253 0.747 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 -0.399 -19.999 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.107 3.893 3 C -0.005 4.005 4 O -0.381 6.381 5 N -0.380 5.380 6 C -0.331 4.331 7 H 0.078 0.922 8 C -0.260 4.260 9 N -0.641 5.641 10 Si 0.776 3.224 11 H -0.215 1.215 12 H -0.225 1.225 13 H -0.182 1.182 14 C -0.088 4.088 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.154 4.154 20 H 0.098 0.902 21 H 0.049 0.951 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.032 0.968 25 H 0.228 0.772 26 H 0.193 0.807 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.736 -0.926 -19.865 19.900 hybrid contribution 0.810 -0.145 1.104 1.377 sum 0.074 -1.072 -18.761 18.791 Atomic orbital electron populations 1.22179 0.95667 1.01900 1.00846 1.19970 0.92761 0.90268 0.86271 1.22716 0.81000 0.98465 0.98300 1.86500 1.20134 1.33920 1.97593 1.42785 1.61221 1.32502 1.01526 1.18921 1.23060 1.07687 0.83399 0.92210 1.25329 1.03207 1.02585 0.94919 1.69867 1.52752 1.44026 0.97478 0.85516 0.79087 0.80708 0.77093 1.21475 1.22534 1.18153 1.21088 0.99274 0.94950 0.93521 1.21639 1.01415 0.98510 0.93052 1.21512 1.00113 0.96109 0.97479 1.21514 1.01007 0.95501 0.97081 1.21533 1.00497 0.98868 0.94619 1.21629 1.00898 0.95374 0.97451 0.90250 0.95071 0.92364 0.91456 0.96772 0.77164 0.80701 0.93792 0.92827 0.90921 0.91670 0.92779 0.90429 0.90967 0.91464 0.92880 0.91564 0.94606 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 7.71 71.98 0.55 -4.54 16 2 C 0.20 7.36 0.40 3.60 0.00 7.37 16 3 C 0.07 2.66 5.29 71.98 0.38 3.04 16 4 O -0.58 -20.77 12.94 -148.98 -1.93 -22.70 16 5 N -0.74 -35.35 4.54 -303.35 -1.38 -36.72 16 6 C -0.20 -11.48 9.15 84.04 0.77 -10.71 16 7 H 0.06 3.74 6.92 -2.91 -0.02 3.72 16 8 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 9 N -0.99 -65.13 13.97 21.65 0.30 -64.83 16 10 Si 0.95 48.29 27.74 68.60 1.90 50.20 16 11 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 12 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 13 H -0.26 -12.00 6.52 99.48 0.65 -11.35 16 14 C -0.07 -2.14 1.38 -10.79 -0.01 -2.15 16 15 C -0.11 -2.52 4.47 30.60 0.14 -2.39 16 16 C -0.11 -2.21 5.92 30.60 0.18 -2.03 16 17 C -0.11 -2.11 5.92 30.60 0.18 -1.93 16 18 C -0.12 -2.73 5.92 30.58 0.18 -2.55 16 19 C -0.12 -3.40 4.58 30.58 0.14 -3.26 16 20 H 0.08 2.13 6.57 -2.39 -0.02 2.11 16 21 H 0.03 1.23 7.27 -2.39 -0.02 1.21 16 22 H 0.06 2.02 6.34 -2.38 -0.02 2.00 16 23 H 0.07 1.88 6.34 -2.39 -0.02 1.86 16 24 H 0.01 0.58 7.27 -2.39 -0.02 0.56 16 25 H 0.38 10.01 9.12 -74.05 -0.68 9.33 16 26 H 0.36 17.37 4.71 -92.71 -0.44 16.93 16 27 H 0.25 16.02 8.31 -92.71 -0.77 15.25 16 28 H 0.05 1.88 7.83 -2.39 -0.02 1.86 16 29 H 0.07 1.55 6.56 -2.39 -0.02 1.53 16 30 H 0.06 1.50 6.34 -2.39 -0.02 1.48 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 1.24 7.18 -2.39 -0.02 1.22 16 38 H 0.07 1.96 6.34 -2.39 -0.02 1.95 16 Total: -1.00 -70.47 282.13 1.76 -68.71 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.12 Total: 28.31 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 2.98 Total: -22.96 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -1.07 Total: -101.56 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -1.93 Total: -22.70 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.90 Total: 50.20 kcal Total: -70.47 1.76 -68.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308687231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.302 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds