Wall clock time and date at job start Sun Mar 29 2020 21:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46678 * 2 1 4 4 H 1.08999 * 109.47549 * 55.81195 * 3 2 1 5 5 N 1.46899 * 109.47705 * 295.80762 * 3 2 1 6 6 C 1.46897 * 110.99971 * 101.48434 * 5 3 2 7 7 C 1.52997 * 109.47296 * 179.47470 * 6 5 3 8 8 C 1.50705 * 109.46964 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00393 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99703 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00066 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99798 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.46957 * 60.00786 * 12 10 8 14 14 H 1.48501 * 109.47093 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47333 * 300.00458 * 12 10 8 16 16 C 1.53003 * 109.46836 * 175.81081 * 3 2 1 17 17 H 1.09004 * 110.45703 * 307.60355 * 16 3 2 18 18 C 1.54506 * 110.51508 * 185.00085 * 16 3 2 19 19 C 1.54479 * 104.18636 * 241.14981 * 18 16 3 20 20 O 1.44645 * 104.69639 * 336.18633 * 19 18 16 21 21 C 1.44425 * 105.36727 * 40.34646 * 20 19 18 22 22 H 1.08998 * 109.46611 * 178.85369 * 1 2 3 23 23 H 1.08997 * 109.47057 * 298.85363 * 1 2 3 24 24 H 1.08997 * 109.47172 * 58.85422 * 1 2 3 25 25 H 1.09001 * 109.46882 * 239.99867 * 2 1 3 26 26 H 1.08996 * 109.46837 * 120.00245 * 2 1 3 27 27 H 1.00904 * 110.99726 * 337.53854 * 5 3 2 28 28 H 1.09004 * 109.47434 * 299.48056 * 6 5 3 29 29 H 1.09009 * 109.47095 * 59.47481 * 6 5 3 30 30 H 1.08995 * 109.47469 * 300.00020 * 7 6 5 31 31 H 1.09004 * 109.47085 * 60.00711 * 7 6 5 32 32 H 0.96998 * 119.99979 * 179.97438 * 11 10 8 33 33 H 1.09003 * 110.50966 * 359.85986 * 18 16 3 34 34 H 1.09003 * 110.51486 * 122.43265 * 18 16 3 35 35 H 1.09005 * 110.37218 * 94.91546 * 19 18 16 36 36 H 1.09001 * 110.37379 * 217.25318 * 19 18 16 37 37 H 1.08996 * 110.37423 * 200.73617 * 21 20 19 38 38 H 1.08999 * 110.37302 * 78.39550 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6166 1.9776 0.8500 5 7 1.6347 2.1052 -1.2468 6 6 0.4719 2.9754 -1.0265 7 6 0.0884 3.6567 -2.3417 8 6 -1.1050 4.5490 -2.1158 9 1 -1.5455 4.6231 -1.1325 10 6 -1.6338 5.2716 -3.1643 11 7 -1.0971 5.1817 -4.3615 12 14 -3.1133 6.3770 -2.8845 13 1 -2.7754 7.4093 -1.8717 14 1 -3.4856 7.0383 -4.1609 15 1 -4.2554 5.5618 -2.3984 16 6 3.5664 1.4438 0.1054 17 1 3.8902 0.8408 0.9538 18 6 4.0990 2.8885 0.2334 19 6 4.9962 3.0728 -1.0106 20 8 5.3865 1.7309 -1.3836 21 6 4.2027 0.9237 -1.2027 22 1 -0.3632 -1.0275 -0.0206 23 1 -0.3633 0.4959 0.9001 24 1 -0.3633 0.5315 -0.8795 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.4478 1.4286 -1.9717 28 1 -0.3666 2.3779 -0.6688 29 1 0.7209 3.7335 -0.2838 30 1 0.9268 4.2543 -2.6994 31 1 -0.1607 2.8987 -3.0844 32 1 -1.4693 5.6898 -5.0992 33 1 3.2751 3.6020 0.2191 34 1 4.6841 3.0004 1.1462 35 1 4.4338 3.5420 -1.8179 36 1 5.8731 3.6702 -0.7609 37 1 4.4720 -0.1276 -1.1017 38 1 3.5176 1.0621 -2.0391 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308737283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:38 Heat of formation + Delta-G solvation = -67.315162 kcal Electronic energy + Delta-G solvation = -16453.238800 eV Core-core repulsion = 13908.750589 eV Total energy + Delta-G solvation = -2544.488211 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52205 -36.93532 -33.64428 -31.89669 -31.63239 -29.27217 -28.31586 -25.37522 -23.69646 -22.89080 -21.05056 -20.52635 -19.49295 -16.38956 -16.17825 -15.65120 -15.38473 -15.05334 -14.47221 -14.44298 -13.60452 -12.97688 -12.92252 -12.84143 -12.29733 -12.22578 -11.99267 -11.44158 -11.18814 -11.10315 -10.97661 -10.92865 -10.71307 -10.64498 -10.35311 -10.24728 -9.99181 -9.44124 -9.32068 -9.16038 -8.36104 -7.76063 -6.00479 -4.03223 3.32192 3.36952 3.38935 4.22299 4.42473 4.66519 4.75193 4.96573 5.14406 5.20430 5.24924 5.35413 5.38431 5.49689 5.64106 5.80028 5.83733 5.88438 5.95999 6.03426 6.04982 6.12962 6.22067 6.27562 6.29229 6.36309 6.44504 6.52131 6.98746 7.06341 7.49329 7.72292 7.82123 7.95457 8.08081 8.42852 9.04101 9.60643 11.10776 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.006344 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.846685 B = 4412.706680 C = 4967.313830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.146 4.146 3 C 0.091 3.909 4 H 0.072 0.928 5 N -0.682 5.682 6 C 0.063 3.937 7 C 0.027 3.973 8 C -0.523 4.523 9 H 0.053 0.947 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.278 1.278 16 C -0.108 4.108 17 H 0.073 0.927 18 C -0.139 4.139 19 C 0.052 3.948 20 O -0.387 6.387 21 C 0.056 3.944 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.336 0.664 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.023 0.977 31 H 0.012 0.988 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.846 -8.721 8.881 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.185 4.185 3 C -0.020 4.020 4 H 0.090 0.910 5 N -0.313 5.313 6 C -0.065 4.065 7 C -0.011 4.011 8 C -0.561 4.561 9 H 0.071 0.929 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.127 4.127 17 H 0.091 0.909 18 C -0.177 4.177 19 C -0.025 4.025 20 O -0.306 6.306 21 C -0.021 4.021 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.155 0.845 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.485 -8.199 8.685 14.651 hybrid contribution -1.819 0.063 0.307 1.846 sum 6.666 -8.136 8.992 13.838 Atomic orbital electron populations 1.21895 0.95582 1.01393 1.02671 1.22191 0.96422 0.97896 1.02017 1.21564 0.93434 0.92743 0.94225 0.91005 1.60650 1.39756 1.24271 1.06658 1.22306 0.88660 0.94303 1.01207 1.19043 0.96172 0.95117 0.90745 1.21139 1.13828 1.25954 0.95221 0.92913 1.24994 0.97174 0.96912 0.95209 1.69958 1.41030 1.41845 1.00345 0.86671 0.83118 0.80888 0.77379 1.20251 1.21263 1.20324 1.22557 0.95587 0.96472 0.98113 0.90901 1.22819 0.99798 0.97174 0.97931 1.23372 0.97931 0.84788 0.96402 1.89048 1.33195 1.19590 1.88784 1.23397 0.87007 0.94508 0.97210 0.93064 0.92839 0.91633 0.91769 0.92033 0.84535 0.95995 0.92670 0.95811 0.96953 0.92940 0.89749 0.92124 0.91335 0.90233 0.90585 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.99 37.16 0.33 -1.64 16 2 C -0.15 -1.70 5.07 -26.73 -0.14 -1.83 16 3 C 0.09 1.22 1.76 -67.71 -0.12 1.10 16 4 H 0.07 1.01 7.60 -51.93 -0.39 0.62 16 5 N -0.68 -11.13 4.63 -106.73 -0.49 -11.63 16 6 C 0.06 1.26 4.98 -3.83 -0.02 1.24 16 7 C 0.03 0.68 5.24 -27.88 -0.15 0.53 16 8 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 9 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 12 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C -0.11 -1.36 2.95 -89.05 -0.26 -1.62 16 17 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 18 C -0.14 -1.84 6.53 -25.16 -0.16 -2.01 16 19 C 0.05 0.73 7.65 37.93 0.29 1.02 16 20 O -0.39 -5.98 11.65 -35.23 -0.41 -6.39 16 21 C 0.06 0.75 6.48 37.94 0.25 0.99 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.96 5.94 -51.93 -0.31 0.65 16 25 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.34 5.46 7.40 -39.29 -0.29 5.17 16 28 H 0.02 0.43 5.90 -51.93 -0.31 0.12 16 29 H 0.05 1.12 8.08 -51.92 -0.42 0.70 16 30 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.08 1.23 7.63 -51.93 -0.40 0.84 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.07 6.44 -51.93 -0.33 0.73 16 LS Contribution 298.77 15.07 4.50 4.50 Total: -1.00 -29.46 298.77 -7.69 -37.15 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.62 Total: 1.47 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -0.39 Total: -15.61 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.24 Total: -37.68 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.41 Total: -6.39 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.46 -7.69 -37.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308737283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.167 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds