Wall clock time and date at job start Sun Mar 29 2020 21:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46678 * 2 1 4 4 H 1.08999 * 109.47549 * 55.81195 * 3 2 1 5 5 N 1.46899 * 109.47705 * 295.80762 * 3 2 1 6 6 C 1.46897 * 110.99971 * 101.48434 * 5 3 2 7 7 C 1.52997 * 109.47296 * 179.47470 * 6 5 3 8 8 C 1.50705 * 109.46964 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00393 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99703 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00066 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99798 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.46957 * 60.00786 * 12 10 8 14 14 H 1.48501 * 109.47093 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47333 * 300.00458 * 12 10 8 16 16 C 1.53003 * 109.46836 * 175.81081 * 3 2 1 17 17 H 1.09004 * 110.45703 * 307.60355 * 16 3 2 18 18 C 1.54506 * 110.51508 * 185.00085 * 16 3 2 19 19 C 1.54479 * 104.18636 * 241.14981 * 18 16 3 20 20 O 1.44645 * 104.69639 * 336.18633 * 19 18 16 21 21 C 1.44425 * 105.36727 * 40.34646 * 20 19 18 22 22 H 1.08998 * 109.46611 * 178.85369 * 1 2 3 23 23 H 1.08997 * 109.47057 * 298.85363 * 1 2 3 24 24 H 1.08997 * 109.47172 * 58.85422 * 1 2 3 25 25 H 1.09001 * 109.46882 * 239.99867 * 2 1 3 26 26 H 1.08996 * 109.46837 * 120.00245 * 2 1 3 27 27 H 1.00904 * 110.99726 * 337.53854 * 5 3 2 28 28 H 1.09004 * 109.47434 * 299.48056 * 6 5 3 29 29 H 1.09009 * 109.47095 * 59.47481 * 6 5 3 30 30 H 1.08995 * 109.47469 * 300.00020 * 7 6 5 31 31 H 1.09004 * 109.47085 * 60.00711 * 7 6 5 32 32 H 0.96998 * 119.99979 * 179.97438 * 11 10 8 33 33 H 1.09003 * 110.50966 * 359.85986 * 18 16 3 34 34 H 1.09003 * 110.51486 * 122.43265 * 18 16 3 35 35 H 1.09005 * 110.37218 * 94.91546 * 19 18 16 36 36 H 1.09001 * 110.37379 * 217.25318 * 19 18 16 37 37 H 1.08996 * 110.37423 * 200.73617 * 21 20 19 38 38 H 1.08999 * 110.37302 * 78.39550 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6166 1.9776 0.8500 5 7 1.6347 2.1052 -1.2468 6 6 0.4719 2.9754 -1.0265 7 6 0.0884 3.6567 -2.3417 8 6 -1.1050 4.5490 -2.1158 9 1 -1.5455 4.6231 -1.1325 10 6 -1.6338 5.2716 -3.1643 11 7 -1.0971 5.1817 -4.3615 12 14 -3.1133 6.3770 -2.8845 13 1 -2.7754 7.4093 -1.8717 14 1 -3.4856 7.0383 -4.1609 15 1 -4.2554 5.5618 -2.3984 16 6 3.5664 1.4438 0.1054 17 1 3.8902 0.8408 0.9538 18 6 4.0990 2.8885 0.2334 19 6 4.9962 3.0728 -1.0106 20 8 5.3865 1.7309 -1.3836 21 6 4.2027 0.9237 -1.2027 22 1 -0.3632 -1.0275 -0.0206 23 1 -0.3633 0.4959 0.9001 24 1 -0.3633 0.5315 -0.8795 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.4478 1.4286 -1.9717 28 1 -0.3666 2.3779 -0.6688 29 1 0.7209 3.7335 -0.2838 30 1 0.9268 4.2543 -2.6994 31 1 -0.1607 2.8987 -3.0844 32 1 -1.4693 5.6898 -5.0992 33 1 3.2751 3.6020 0.2191 34 1 4.6841 3.0004 1.1462 35 1 4.4338 3.5420 -1.8179 36 1 5.8731 3.6702 -0.7609 37 1 4.4720 -0.1276 -1.1017 38 1 3.5176 1.0621 -2.0391 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308737283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:38 Heat of formation + Delta-G solvation = -86.225629 kcal Electronic energy + Delta-G solvation = -16454.058819 eV Core-core repulsion = 13908.750589 eV Total energy + Delta-G solvation = -2545.308231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64272 -38.19038 -35.54630 -33.60000 -32.69585 -30.61292 -29.82460 -26.78821 -25.36991 -24.03800 -22.33684 -22.05292 -20.63836 -18.48578 -17.28252 -16.84038 -16.72217 -16.48390 -16.24393 -15.57616 -14.82345 -14.51852 -14.49587 -13.96623 -13.84091 -13.50167 -13.22998 -13.00580 -12.83413 -12.58602 -12.39195 -12.26229 -12.05969 -11.95442 -11.64713 -11.63627 -11.32491 -11.29795 -11.01710 -10.59368 -10.55639 -9.11584 -8.19927 -6.31244 1.39505 1.42368 1.50323 2.40146 3.13521 3.13667 3.41368 3.68435 3.93251 4.06640 4.21209 4.22097 4.34225 4.45382 4.54849 4.57553 4.66851 4.76985 4.84418 4.88635 4.94718 5.00562 5.07552 5.11941 5.14974 5.17675 5.22304 5.35310 5.39211 5.49037 5.71620 5.81775 5.96052 6.17850 6.36193 6.60796 6.86979 7.38089 8.91815 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.006344 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.846685 B = 4412.706680 C = 4967.313830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.139 4.139 3 C 0.093 3.907 4 H 0.068 0.932 5 N -0.685 5.685 6 C 0.086 3.914 7 C 0.035 3.965 8 C -0.544 4.544 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.964 3.036 13 H -0.267 1.267 14 H -0.284 1.284 15 H -0.266 1.266 16 C -0.101 4.101 17 H 0.099 0.901 18 C -0.138 4.138 19 C 0.049 3.951 20 O -0.403 6.403 21 C 0.052 3.948 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.336 0.664 28 H 0.027 0.973 29 H 0.051 0.949 30 H -0.010 1.010 31 H -0.012 1.012 32 H 0.263 0.737 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 -9.488 10.740 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.178 4.178 3 C -0.017 4.017 4 H 0.087 0.913 5 N -0.316 5.316 6 C -0.043 4.043 7 C -0.003 4.003 8 C -0.582 4.582 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.191 1.191 16 C -0.120 4.120 17 H 0.117 0.883 18 C -0.176 4.176 19 C -0.028 4.028 20 O -0.323 6.323 21 C -0.024 4.024 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.155 0.845 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.008 0.992 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.396 -8.979 10.562 16.207 hybrid contribution -1.739 0.273 -0.295 1.785 sum 6.657 -8.706 10.267 15.017 Atomic orbital electron populations 1.21870 0.96348 1.01975 1.01248 1.22130 0.95603 0.96559 1.03485 1.21613 0.94145 0.93708 0.92233 0.91329 1.60545 1.37849 1.24741 1.08454 1.21873 0.90175 0.94565 0.97689 1.18881 0.94391 0.94101 0.92897 1.21601 1.14623 1.26412 0.95610 0.92252 1.25956 1.00391 0.98504 0.94836 1.70101 1.42764 1.42948 1.01341 0.85523 0.79247 0.78885 0.77520 1.19205 1.20893 1.19127 1.22558 0.94541 0.96368 0.98572 0.88283 1.22809 0.99261 0.97190 0.98312 1.23402 0.98691 0.84603 0.96068 1.89033 1.34088 1.20109 1.89027 1.23496 0.86360 0.95551 0.97031 0.91471 0.92960 0.94333 0.91202 0.89542 0.84517 0.95470 0.93013 0.99163 0.99374 0.92819 0.91624 0.89968 0.93868 0.88388 0.88307 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 8.99 71.99 0.65 -3.01 16 2 C -0.14 -2.86 5.07 30.60 0.16 -2.71 16 3 C 0.09 2.33 1.76 44.91 0.08 2.41 16 4 H 0.07 1.80 7.60 -2.39 -0.02 1.79 16 5 N -0.68 -22.49 4.63 -491.57 -2.27 -24.76 16 6 C 0.09 3.46 4.98 86.30 0.43 3.89 16 7 C 0.03 1.84 5.24 29.85 0.16 2.00 16 8 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 9 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 10 C 0.00 0.07 5.46 84.66 0.46 0.53 16 11 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 12 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 C -0.10 -2.31 2.95 -9.78 -0.03 -2.34 16 17 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 18 C -0.14 -3.44 6.53 31.61 0.21 -3.24 16 19 C 0.05 1.35 7.65 72.48 0.55 1.91 16 20 O -0.40 -12.01 11.65 -148.98 -1.74 -13.75 16 21 C 0.05 1.32 6.48 72.49 0.47 1.79 16 22 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.04 1.10 5.94 -2.39 -0.01 1.08 16 25 H 0.07 1.39 7.67 -2.39 -0.02 1.37 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.34 11.10 7.40 -89.69 -0.66 10.44 16 28 H 0.03 1.07 5.90 -2.39 -0.01 1.06 16 29 H 0.05 2.12 8.08 -2.38 -0.02 2.10 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 32 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.06 1.89 7.63 -2.39 -0.02 1.87 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 1.63 6.44 -2.39 -0.02 1.61 16 Total: -1.00 -64.12 298.77 2.02 -62.10 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.35 Total: 16.54 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 3.36 Total: -29.55 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -1.99 Total: -81.70 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -1.74 Total: -13.75 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.12 2.02 -62.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308737283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.125 kcal (2) G-P(sol) polarization free energy of solvation -64.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds